Wall clock time and date at job start Wed Apr 1 2020 05:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35045 * 126.39361 * 2 1 4 4 N 1.30495 * 108.70433 * 180.02562 * 3 2 1 5 5 C 1.34140 * 109.25174 * 359.97438 * 4 3 2 6 6 C 1.50693 * 125.98529 * 180.02562 * 5 4 3 7 7 H 1.08996 * 110.64525 * 331.87608 * 6 5 4 8 8 C 1.54332 * 110.86758 * 208.62978 * 6 5 4 9 9 N 1.47020 * 107.27093 * 219.37275 * 8 6 5 10 10 C 1.34775 * 125.64988 * 178.90514 * 9 8 6 11 11 O 1.21287 * 119.99802 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00369 * 180.02562 * 10 9 8 13 13 N 1.46897 * 109.47469 * 179.97438 * 12 10 9 14 14 C 1.48536 * 110.99828 * 52.60465 * 13 12 10 15 15 C 1.54931 * 103.22717 * 159.72133 * 14 13 12 16 16 C 1.54594 * 102.92362 * 322.58380 * 15 14 13 17 17 C 1.47899 * 111.00021 * 170.00099 * 13 12 10 18 18 C 1.47472 * 108.72495 * 358.97747 * 9 8 6 19 19 C 1.54912 * 104.81021 * 24.07006 * 18 9 8 20 20 H 1.08998 * 111.00647 * 81.13215 * 19 18 9 21 21 N 1.46498 * 111.00280 * 204.95155 * 19 18 9 22 22 C 1.36936 * 119.99972 * 270.41405 * 21 19 18 23 23 H 1.08002 * 119.99631 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00202 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00103 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00201 * 179.72570 * 24 22 21 27 27 H 1.48501 * 109.47085 * 270.27640 * 26 24 22 28 28 H 1.48497 * 109.46789 * 30.27649 * 26 24 22 29 29 H 1.48490 * 109.47245 * 150.27799 * 26 24 22 30 30 C 1.34669 * 108.01864 * 0.26356 * 5 4 3 31 31 H 1.09001 * 109.47464 * 89.98337 * 1 2 3 32 32 H 1.09007 * 109.46924 * 209.97588 * 1 2 3 33 33 H 1.08994 * 109.47310 * 329.97668 * 1 2 3 34 34 H 1.08005 * 125.64921 * 0.04628 * 3 2 1 35 35 H 1.08995 * 109.88254 * 338.79503 * 8 6 5 36 36 H 1.08999 * 109.87678 * 99.80609 * 8 6 5 37 37 H 1.08996 * 109.47056 * 300.00105 * 12 10 9 38 38 H 1.09003 * 109.47269 * 59.99848 * 12 10 9 39 39 H 1.08997 * 110.66952 * 278.15755 * 14 13 12 40 40 H 1.09004 * 110.66800 * 41.28191 * 14 13 12 41 41 H 1.09004 * 110.72413 * 204.22686 * 15 14 13 42 42 H 1.09000 * 110.87764 * 81.01911 * 15 14 13 43 43 H 1.09000 * 110.31208 * 263.04181 * 16 15 14 44 44 H 1.08998 * 110.30937 * 140.87704 * 16 15 14 45 45 H 1.09004 * 109.92071 * 333.50609 * 17 13 12 46 46 H 1.08994 * 109.91981 * 94.80995 * 17 13 12 47 47 H 1.09003 * 110.34688 * 265.25158 * 18 9 8 48 48 H 1.09000 * 110.40730 * 142.91486 * 18 9 8 49 49 H 0.97001 * 120.00384 * 90.42222 * 21 19 18 50 50 H 0.97005 * 119.99717 * 359.71965 * 25 24 22 51 51 H 1.07996 * 126.58846 * 179.70466 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6905 -0.0006 5 6 3.5461 -0.6504 -0.0004 6 6 4.7891 -1.5022 -0.0003 7 1 5.6146 -0.9775 -0.4812 8 6 4.5271 -2.8572 -0.6910 9 7 5.2401 -3.8856 0.0806 10 6 5.2442 -5.2065 -0.1871 11 8 4.6211 -5.6351 -1.1354 12 6 6.0221 -6.1512 0.6924 13 7 5.8665 -7.5244 0.1942 14 6 6.2035 -7.6080 -1.2501 15 6 6.4984 -9.1146 -1.4586 16 6 7.2210 -9.5098 -0.1504 17 6 6.7986 -8.4457 0.8797 18 6 5.9488 -3.2333 1.1972 19 6 5.1702 -1.9172 1.4454 20 1 4.2798 -2.0976 2.0476 21 7 6.0291 -0.9092 2.0719 22 6 6.1156 -0.8360 3.4366 23 1 5.5509 -1.5216 4.0510 24 6 6.9289 0.1194 4.0302 25 7 7.6167 0.9554 3.2814 26 14 7.0410 0.2243 5.8919 27 1 5.9962 1.1496 6.3993 28 1 6.8340 -1.1247 6.4770 29 1 8.3818 0.7315 6.2793 30 6 2.2773 -1.1017 -0.0055 31 1 -0.3634 0.0003 -1.0276 32 1 -0.3633 -0.8903 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 1.9333 2.1145 0.0007 35 1 3.4583 -3.0709 -0.6946 36 1 4.9031 -2.8307 -1.7138 37 1 7.0767 -5.8762 0.6775 38 1 5.6452 -6.0907 1.7134 39 1 5.3576 -7.2933 -1.8613 40 1 7.0857 -7.0085 -1.4746 41 1 7.1500 -9.2645 -2.3195 42 1 5.5732 -9.6792 -1.5740 43 1 8.3014 -9.4895 -0.2938 44 1 6.9004 -10.4994 0.1749 45 1 7.6742 -7.8974 1.2274 46 1 6.2971 -8.9226 1.7217 47 1 6.9798 -3.0171 0.9171 48 1 5.9205 -3.8641 2.0857 49 1 6.5364 -0.2936 1.5201 50 1 7.5583 0.9011 2.3146 51 1 1.9614 -2.1344 -0.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070565045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:07 Heat of formation + Delta-G solvation = 68.798947 kcal Electronic energy + Delta-G solvation = -31162.799355 eV Core-core repulsion = 27099.228673 eV Total energy + Delta-G solvation = -4063.570683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.91121 -40.14090 -38.64867 -37.20269 -34.31441 -34.04174 -32.57033 -31.73596 -30.57640 -28.90620 -28.46114 -27.28768 -27.20665 -26.01599 -23.76270 -22.89946 -21.38263 -21.12089 -20.97479 -20.81685 -19.38292 -19.00652 -17.52222 -17.14723 -16.73619 -16.34394 -15.77884 -15.65808 -15.54471 -15.02555 -14.64599 -14.29990 -14.12343 -13.92920 -13.78089 -13.66796 -13.28375 -13.25207 -12.96877 -12.82465 -12.74883 -12.57459 -12.50935 -12.25197 -12.11495 -11.63740 -11.44425 -11.39375 -11.22303 -11.00786 -10.76765 -10.72558 -10.66171 -10.39197 -10.03004 -9.63481 -9.53417 -9.35415 -9.17804 -8.98915 -8.53373 -8.38282 -8.10402 -7.05974 -6.09881 -3.11100 2.20697 2.76132 2.89273 3.02223 3.39399 3.50977 3.55688 3.69490 3.96597 4.45738 4.54820 4.57589 4.60882 4.70697 4.79491 4.82610 4.95026 4.96024 5.09719 5.17234 5.18812 5.19482 5.23345 5.30887 5.34689 5.43889 5.53549 5.57348 5.63878 5.65763 5.66321 5.71182 5.78855 5.79511 5.89521 5.97067 6.04337 6.12616 6.16368 6.25341 6.30740 6.39430 6.47797 6.78312 6.79483 6.83561 6.95059 7.34310 7.71686 7.79333 8.33215 8.36739 8.76255 9.20494 10.06983 10.20853 11.38260 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007554 B = 0.003443 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3705.737829 B = 8131.351733 C =11156.686491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.467 5.467 3 C 0.178 3.822 4 N -0.471 5.471 5 C 0.037 3.963 6 C -0.029 4.029 7 H 0.094 0.906 8 C 0.124 3.876 9 N -0.613 5.613 10 C 0.529 3.471 11 O -0.539 6.539 12 C 0.032 3.968 13 N -0.502 5.502 14 C 0.031 3.969 15 C -0.126 4.126 16 C -0.131 4.131 17 C 0.033 3.967 18 C 0.070 3.930 19 C 0.194 3.806 20 H 0.066 0.934 21 N -0.714 5.714 22 C -0.337 4.337 23 H 0.064 0.936 24 C -0.038 4.038 25 N -0.939 5.939 26 Si 1.081 2.919 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.288 1.288 30 C -0.064 4.064 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.202 0.798 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.372 0.628 50 H 0.258 0.742 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.689 -12.647 -8.635 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.151 5.151 3 C -0.104 4.104 4 N -0.188 5.188 5 C -0.093 4.093 6 C -0.050 4.050 7 H 0.112 0.888 8 C 0.000 4.000 9 N -0.347 5.347 10 C 0.317 3.683 11 O -0.417 6.417 12 C -0.099 4.099 13 N -0.227 5.227 14 C -0.096 4.096 15 C -0.164 4.164 16 C -0.169 4.169 17 C -0.095 4.095 18 C -0.056 4.056 19 C 0.081 3.919 20 H 0.084 0.916 21 N -0.355 5.355 22 C -0.467 4.467 23 H 0.082 0.918 24 C -0.237 4.237 25 N -0.583 5.583 26 Si 0.912 3.088 27 H -0.224 1.224 28 H -0.222 1.222 29 H -0.214 1.214 30 C -0.195 4.195 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.218 0.782 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.207 0.793 50 H 0.070 0.930 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.432 -11.854 -7.594 16.945 hybrid contribution -0.494 -0.750 -1.297 1.578 sum -9.926 -12.604 -8.892 18.342 Atomic orbital electron populations 1.21974 0.77079 1.04496 1.03162 1.45345 1.07309 1.07070 1.55394 1.24968 0.85486 0.93464 1.06498 1.70190 1.19004 1.11416 1.18227 1.20100 0.92705 0.90423 1.06061 1.20723 0.94190 0.91766 0.98365 0.88764 1.21847 0.97005 0.86153 0.94996 1.48502 1.50117 1.05424 1.30661 1.20067 0.81783 0.81165 0.85286 1.90602 1.44591 1.75951 1.30563 1.22185 0.99261 0.88710 0.99781 1.64685 1.49249 1.04593 1.04163 1.23520 1.01016 0.95272 0.89794 1.22522 1.00524 0.96426 0.96916 1.22397 1.00084 0.98972 0.95457 1.22941 0.94570 0.94304 0.97678 1.23581 0.97290 0.96940 0.87749 1.21180 0.93009 0.87569 0.90164 0.91635 1.42225 1.52380 1.36592 1.04297 1.20013 1.26552 1.17535 0.82649 0.91792 1.25716 0.96532 0.94733 1.06716 1.70821 1.43193 1.38456 1.05843 0.83230 0.76276 0.75081 0.74233 1.22398 1.22157 1.21388 1.22349 0.90956 0.92335 1.13895 0.90844 0.89901 0.89608 0.78172 0.91401 0.91542 0.91690 0.87632 0.87018 0.94558 0.91330 0.90813 0.91616 0.91070 0.93584 0.90155 0.91138 0.90936 0.79323 0.93030 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 11.18 59.85 0.67 1.22 16 2 N -0.47 -5.84 3.15 -125.99 -0.40 -6.23 16 3 C 0.18 2.58 12.56 -90.38 -1.14 1.44 16 4 N -0.47 -8.82 11.25 -10.87 -0.12 -8.95 16 5 C 0.04 0.64 6.16 -82.85 -0.51 0.13 16 6 C -0.03 -0.51 3.10 -89.93 -0.28 -0.78 16 7 H 0.09 1.72 8.00 -51.93 -0.42 1.31 16 8 C 0.12 1.88 6.41 -3.06 -0.02 1.86 16 9 N -0.61 -9.50 3.33 -170.48 -0.57 -10.07 16 10 C 0.53 8.24 7.56 -10.99 -0.08 8.16 16 11 O -0.54 -9.55 13.85 5.55 0.08 -9.48 16 12 C 0.03 0.42 4.52 -4.98 -0.02 0.40 16 13 N -0.50 -6.50 5.26 -231.89 -1.22 -7.72 16 14 C 0.03 0.39 5.30 -1.90 -0.01 0.38 16 15 C -0.13 -1.24 7.06 -24.87 -0.18 -1.42 16 16 C -0.13 -1.17 6.93 -25.37 -0.18 -1.34 16 17 C 0.03 0.34 6.70 -2.75 -0.02 0.32 16 18 C 0.07 1.18 6.39 -2.50 -0.02 1.17 16 19 C 0.19 3.76 3.13 -65.78 -0.21 3.56 16 20 H 0.07 1.35 8.01 -51.93 -0.42 0.94 16 21 N -0.71 -17.28 5.26 -51.35 -0.27 -17.55 16 22 C -0.34 -9.15 9.97 -15.06 -0.15 -9.30 16 23 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 25 N -0.94 -28.70 13.70 55.49 0.76 -27.94 16 26 Si 1.08 25.63 29.92 -169.99 -5.09 20.54 16 27 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 C -0.06 -0.92 10.57 -16.56 -0.18 -1.09 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.20 2.13 8.06 -52.48 -0.42 1.70 16 35 H 0.07 0.98 5.94 -51.93 -0.31 0.68 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.81 7.81 -51.93 -0.41 0.40 16 38 H 0.11 1.31 7.85 -51.93 -0.41 0.90 16 39 H 0.11 1.65 5.97 -51.93 -0.31 1.34 16 40 H 0.04 0.47 8.02 -51.93 -0.42 0.05 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.46 7.57 -51.93 -0.39 0.06 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 48 H 0.07 1.17 7.48 -51.93 -0.39 0.78 16 49 H 0.37 9.56 6.57 -40.82 -0.27 9.29 16 50 H 0.26 7.84 6.77 -40.82 -0.28 7.56 16 51 H 0.17 2.09 6.88 -52.49 -0.36 1.73 16 LS Contribution 404.23 15.07 6.09 6.09 Total: -1.00 -34.95 404.23 -11.36 -46.31 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -8.22 Total: 11.47 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.40 Total: 3.50 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -1.82 Total: -78.45 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.54 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.95 -11.36 -46.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070565045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.114 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds