Wall clock time and date at job start Wed Apr 1 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35045 * 126.39361 * 2 1 4 4 N 1.30495 * 108.70433 * 180.02562 * 3 2 1 5 5 C 1.34140 * 109.25174 * 359.97438 * 4 3 2 6 6 C 1.50693 * 125.98529 * 180.02562 * 5 4 3 7 7 H 1.08996 * 110.64525 * 331.87608 * 6 5 4 8 8 C 1.54332 * 110.86758 * 208.62978 * 6 5 4 9 9 N 1.47020 * 107.27093 * 219.37275 * 8 6 5 10 10 C 1.34775 * 125.64988 * 178.90514 * 9 8 6 11 11 O 1.21287 * 119.99802 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00369 * 180.02562 * 10 9 8 13 13 N 1.46897 * 109.47469 * 179.97438 * 12 10 9 14 14 C 1.48536 * 110.99828 * 52.60465 * 13 12 10 15 15 C 1.54931 * 103.22717 * 159.72133 * 14 13 12 16 16 C 1.54594 * 102.92362 * 322.58380 * 15 14 13 17 17 C 1.47899 * 111.00021 * 170.00099 * 13 12 10 18 18 C 1.47472 * 108.72495 * 358.97747 * 9 8 6 19 19 C 1.54912 * 104.81021 * 24.07006 * 18 9 8 20 20 H 1.08998 * 111.00647 * 81.13215 * 19 18 9 21 21 N 1.46498 * 111.00280 * 204.95155 * 19 18 9 22 22 C 1.36936 * 119.99972 * 270.41405 * 21 19 18 23 23 H 1.08002 * 119.99631 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00202 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00103 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00201 * 179.72570 * 24 22 21 27 27 H 1.48501 * 109.47085 * 270.27640 * 26 24 22 28 28 H 1.48497 * 109.46789 * 30.27649 * 26 24 22 29 29 H 1.48490 * 109.47245 * 150.27799 * 26 24 22 30 30 C 1.34669 * 108.01864 * 0.26356 * 5 4 3 31 31 H 1.09001 * 109.47464 * 89.98337 * 1 2 3 32 32 H 1.09007 * 109.46924 * 209.97588 * 1 2 3 33 33 H 1.08994 * 109.47310 * 329.97668 * 1 2 3 34 34 H 1.08005 * 125.64921 * 0.04628 * 3 2 1 35 35 H 1.08995 * 109.88254 * 338.79503 * 8 6 5 36 36 H 1.08999 * 109.87678 * 99.80609 * 8 6 5 37 37 H 1.08996 * 109.47056 * 300.00105 * 12 10 9 38 38 H 1.09003 * 109.47269 * 59.99848 * 12 10 9 39 39 H 1.08997 * 110.66952 * 278.15755 * 14 13 12 40 40 H 1.09004 * 110.66800 * 41.28191 * 14 13 12 41 41 H 1.09004 * 110.72413 * 204.22686 * 15 14 13 42 42 H 1.09000 * 110.87764 * 81.01911 * 15 14 13 43 43 H 1.09000 * 110.31208 * 263.04181 * 16 15 14 44 44 H 1.08998 * 110.30937 * 140.87704 * 16 15 14 45 45 H 1.09004 * 109.92071 * 333.50609 * 17 13 12 46 46 H 1.08994 * 109.91981 * 94.80995 * 17 13 12 47 47 H 1.09003 * 110.34688 * 265.25158 * 18 9 8 48 48 H 1.09000 * 110.40730 * 142.91486 * 18 9 8 49 49 H 0.97001 * 120.00384 * 90.42222 * 21 19 18 50 50 H 0.97005 * 119.99717 * 359.71965 * 25 24 22 51 51 H 1.07996 * 126.58846 * 179.70466 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6905 -0.0006 5 6 3.5461 -0.6504 -0.0004 6 6 4.7891 -1.5022 -0.0003 7 1 5.6146 -0.9775 -0.4812 8 6 4.5271 -2.8572 -0.6910 9 7 5.2401 -3.8856 0.0806 10 6 5.2442 -5.2065 -0.1871 11 8 4.6211 -5.6351 -1.1354 12 6 6.0221 -6.1512 0.6924 13 7 5.8665 -7.5244 0.1942 14 6 6.2035 -7.6080 -1.2501 15 6 6.4984 -9.1146 -1.4586 16 6 7.2210 -9.5098 -0.1504 17 6 6.7986 -8.4457 0.8797 18 6 5.9488 -3.2333 1.1972 19 6 5.1702 -1.9172 1.4454 20 1 4.2798 -2.0976 2.0476 21 7 6.0291 -0.9092 2.0719 22 6 6.1156 -0.8360 3.4366 23 1 5.5509 -1.5216 4.0510 24 6 6.9289 0.1194 4.0302 25 7 7.6167 0.9554 3.2814 26 14 7.0410 0.2243 5.8919 27 1 5.9962 1.1496 6.3993 28 1 6.8340 -1.1247 6.4770 29 1 8.3818 0.7315 6.2793 30 6 2.2773 -1.1017 -0.0055 31 1 -0.3634 0.0003 -1.0276 32 1 -0.3633 -0.8903 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 1.9333 2.1145 0.0007 35 1 3.4583 -3.0709 -0.6946 36 1 4.9031 -2.8307 -1.7138 37 1 7.0767 -5.8762 0.6775 38 1 5.6452 -6.0907 1.7134 39 1 5.3576 -7.2933 -1.8613 40 1 7.0857 -7.0085 -1.4746 41 1 7.1500 -9.2645 -2.3195 42 1 5.5732 -9.6792 -1.5740 43 1 8.3014 -9.4895 -0.2938 44 1 6.9004 -10.4994 0.1749 45 1 7.6742 -7.8974 1.2274 46 1 6.2971 -8.9226 1.7217 47 1 6.9798 -3.0171 0.9171 48 1 5.9205 -3.8641 2.0857 49 1 6.5364 -0.2936 1.5201 50 1 7.5583 0.9011 2.3146 51 1 1.9614 -2.1344 -0.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070565045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:06 Heat of formation + Delta-G solvation = 45.438851 kcal Electronic energy + Delta-G solvation = -31163.812325 eV Core-core repulsion = 27099.228673 eV Total energy + Delta-G solvation = -4064.583652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.03805 -41.36176 -39.76473 -38.48037 -36.16957 -35.10079 -33.68739 -33.07757 -32.18856 -29.75628 -29.65404 -28.85742 -28.13716 -27.03683 -25.65033 -24.25678 -22.52481 -22.34872 -22.05070 -21.70540 -20.67871 -20.27252 -19.37451 -18.37204 -17.91703 -17.42322 -17.02168 -16.69741 -16.55527 -16.37363 -16.02890 -15.73167 -15.42311 -15.18745 -15.00492 -14.90668 -14.66626 -14.34896 -14.24742 -13.94957 -13.76147 -13.63612 -13.40360 -13.29089 -13.16581 -12.90433 -12.75673 -12.58144 -12.53236 -12.44371 -12.22436 -11.92486 -11.90507 -11.84915 -11.46297 -11.25930 -11.05046 -10.81624 -10.70450 -10.43019 -9.77229 -9.44693 -9.37190 -9.02317 -8.33133 -5.28117 1.10960 1.51339 1.60145 1.70559 1.76845 1.84594 1.99694 2.16391 2.73225 2.99700 3.22161 3.41369 3.49623 3.73345 3.75595 3.81524 3.91849 3.93803 3.98769 4.04983 4.07333 4.18886 4.23693 4.27271 4.30289 4.32667 4.35699 4.45706 4.51062 4.62797 4.64097 4.68510 4.71191 4.72582 4.86379 4.93239 4.94503 4.98495 5.05930 5.13956 5.23519 5.27546 5.30321 5.32116 5.63532 5.77449 5.83915 5.91568 6.34524 6.43093 6.53979 7.06745 7.11940 7.21975 8.00884 8.14146 9.18091 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007554 B = 0.003443 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3705.737829 B = 8131.351733 C =11156.686491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C 0.176 3.824 4 N -0.532 5.532 5 C -0.001 4.001 6 C -0.017 4.017 7 H 0.072 0.928 8 C 0.132 3.868 9 N -0.610 5.610 10 C 0.528 3.472 11 O -0.560 6.560 12 C 0.035 3.965 13 N -0.517 5.517 14 C 0.030 3.970 15 C -0.121 4.121 16 C -0.126 4.126 17 C 0.030 3.970 18 C 0.088 3.912 19 C 0.191 3.809 20 H 0.055 0.945 21 N -0.726 5.726 22 C -0.326 4.326 23 H 0.069 0.931 24 C -0.100 4.100 25 N -0.974 5.974 26 Si 1.127 2.873 27 H -0.291 1.291 28 H -0.268 1.268 29 H -0.295 1.295 30 C -0.053 4.053 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.233 0.767 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.361 0.639 50 H 0.244 0.756 51 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 -14.628 -8.013 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.142 5.142 3 C -0.106 4.106 4 N -0.251 5.251 5 C -0.131 4.131 6 C -0.038 4.038 7 H 0.091 0.909 8 C 0.008 3.992 9 N -0.344 5.344 10 C 0.317 3.683 11 O -0.439 6.439 12 C -0.096 4.096 13 N -0.242 5.242 14 C -0.097 4.097 15 C -0.159 4.159 16 C -0.164 4.164 17 C -0.098 4.098 18 C -0.038 4.038 19 C 0.080 3.920 20 H 0.073 0.927 21 N -0.366 5.366 22 C -0.458 4.458 23 H 0.087 0.913 24 C -0.291 4.291 25 N -0.622 5.622 26 Si 0.952 3.048 27 H -0.219 1.219 28 H -0.193 1.193 29 H -0.221 1.221 30 C -0.187 4.187 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.048 0.952 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.193 0.807 50 H 0.055 0.945 51 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -11.143 -13.896 -6.998 19.138 hybrid contribution -0.135 -0.150 -1.590 1.603 sum -11.278 -14.046 -8.588 19.956 Atomic orbital electron populations 1.22372 0.73661 1.06225 1.05043 1.45618 1.09244 1.05823 1.53506 1.25530 0.84825 0.95140 1.05145 1.70095 1.21859 1.12519 1.20612 1.20186 0.93678 0.90409 1.08781 1.20500 0.94079 0.92671 0.96528 0.90920 1.21782 0.97651 0.84978 0.94773 1.48481 1.50038 1.05676 1.30234 1.20526 0.81490 0.81036 0.85204 1.90609 1.45574 1.76134 1.31557 1.22191 0.99223 0.88570 0.99567 1.64688 1.50541 1.04571 1.04441 1.23418 0.99580 0.97185 0.89528 1.22505 1.01014 0.94231 0.98189 1.22408 1.00650 0.99144 0.94209 1.23046 0.94360 0.94223 0.98152 1.23161 0.96317 0.95689 0.88604 1.21271 0.92028 0.87626 0.91102 0.92660 1.42325 1.53129 1.37690 1.03485 1.20334 1.24950 1.16416 0.84061 0.91349 1.27075 0.96850 0.94900 1.10305 1.70939 1.45564 1.40512 1.05174 0.82637 0.75835 0.76372 0.69931 1.21857 1.19331 1.22136 1.22590 0.90312 0.93654 1.12122 0.88844 0.88627 0.87542 0.75072 0.90217 0.91261 0.90875 0.86562 0.89607 0.95199 0.89939 0.90886 0.90500 0.89595 0.93115 0.89348 0.91946 0.89817 0.80657 0.94547 0.79212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 11.18 127.77 1.43 2.19 16 2 N -0.46 -10.62 3.15 -552.53 -1.74 -12.36 16 3 C 0.18 4.96 12.56 180.26 2.26 7.23 16 4 N -0.53 -20.40 11.25 -188.31 -2.12 -22.52 16 5 C 0.00 -0.05 6.16 41.39 0.25 0.20 16 6 C -0.02 -0.60 3.10 -10.35 -0.03 -0.63 16 7 H 0.07 2.84 8.00 -2.39 -0.02 2.82 16 8 C 0.13 3.98 6.41 86.73 0.56 4.54 16 9 N -0.61 -18.64 3.33 -811.66 -2.70 -21.34 16 10 C 0.53 16.05 7.56 87.66 0.66 16.71 16 11 O -0.56 -19.60 13.85 -3.05 -0.04 -19.64 16 12 C 0.04 0.89 4.52 85.56 0.39 1.27 16 13 N -0.52 -12.67 5.26 -887.57 -4.67 -17.33 16 14 C 0.03 0.74 5.30 86.65 0.46 1.20 16 15 C -0.12 -2.18 7.06 31.80 0.22 -1.96 16 16 C -0.13 -1.92 6.93 31.48 0.22 -1.70 16 17 C 0.03 0.55 6.70 86.45 0.58 1.12 16 18 C 0.09 2.94 6.39 86.85 0.55 3.50 16 19 C 0.19 7.53 3.13 46.39 0.15 7.68 16 20 H 0.06 2.30 8.01 -2.39 -0.02 2.28 16 21 N -0.73 -36.21 5.26 -316.37 -1.66 -37.87 16 22 C -0.33 -17.92 9.97 84.03 0.84 -17.08 16 23 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 24 C -0.10 -5.74 5.50 84.86 0.47 -5.27 16 25 N -0.97 -61.38 13.70 21.65 0.30 -61.09 16 26 Si 1.13 51.71 29.92 68.60 2.05 53.77 16 27 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 29 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 30 C -0.05 -1.47 10.57 83.09 0.88 -0.59 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.23 4.56 8.06 -2.91 -0.02 4.53 16 35 H 0.08 2.23 5.94 -2.39 -0.01 2.22 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.07 1.72 7.81 -2.39 -0.02 1.70 16 38 H 0.12 2.66 7.85 -2.39 -0.02 2.64 16 39 H 0.09 2.56 5.97 -2.39 -0.01 2.54 16 40 H 0.03 0.75 8.02 -2.38 -0.02 0.73 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 0.89 7.57 -2.39 -0.02 0.87 16 46 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.08 2.61 7.48 -2.39 -0.02 2.59 16 49 H 0.36 19.54 6.57 -92.71 -0.61 18.93 16 50 H 0.24 15.53 6.77 -92.70 -0.63 14.91 16 51 H 0.19 4.30 6.88 -2.91 -0.02 4.28 16 Total: -1.00 -78.09 404.23 -0.24 -78.33 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: 0.46 Total: 41.63 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 9.88 Total: 18.43 kcal Atomic # 7 Polarization: -159.92 SS G_CDS: -12.60 Total: -172.51 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.04 Total: -19.64 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.77 kcal Total: -78.09 -0.24 -78.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070565045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.771 kcal (2) G-P(sol) polarization free energy of solvation -78.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds