Wall clock time and date at job start Wed Apr 1 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35043 * 126.39976 * 2 1 4 4 N 1.30500 * 108.70074 * 180.26722 * 3 2 1 5 5 C 1.34133 * 109.25645 * 359.76540 * 4 3 2 6 6 C 1.34668 * 108.01759 * 0.02562 * 5 4 3 7 7 C 1.50708 * 126.59065 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.91349 * 201.12220 * 7 6 5 9 9 C 1.54908 * 111.00100 * 77.22039 * 7 6 5 10 10 N 1.47424 * 104.82942 * 204.91648 * 9 7 6 11 11 C 1.34780 * 125.64682 * 204.09192 * 10 9 7 12 12 O 1.21277 * 120.00540 * 0.02562 * 11 10 9 13 13 C 1.50710 * 119.99716 * 180.02562 * 11 10 9 14 14 H 1.08996 * 110.36459 * 42.34833 * 13 11 10 15 15 C 1.54385 * 110.40780 * 279.99950 * 13 11 10 16 16 C 1.54263 * 105.05731 * 217.36779 * 15 13 11 17 17 C 1.54375 * 105.05941 * 0.02562 * 16 15 13 18 18 N 1.48559 * 110.40818 * 164.83020 * 13 11 10 19 19 C 1.46903 * 110.99967 * 277.81354 * 18 13 11 20 20 C 1.47020 * 108.70507 * 24.13033 * 10 9 7 21 21 C 1.54324 * 107.27181 * 358.93813 * 20 10 9 22 22 H 1.09006 * 110.72009 * 96.34264 * 21 20 10 23 23 N 1.46496 * 110.72507 * 219.44845 * 21 20 10 24 24 C 1.36945 * 119.99718 * 273.54571 * 23 21 20 25 25 H 1.07997 * 119.99756 * 359.97438 * 24 23 21 26 26 C 1.38805 * 119.99878 * 179.97438 * 24 23 21 27 27 N 1.31624 * 120.00257 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 119.99929 * 179.97438 * 26 24 23 29 29 H 1.48498 * 109.47174 * 270.00277 * 28 26 24 30 30 H 1.48501 * 109.47062 * 30.00228 * 28 26 24 31 31 H 1.48499 * 109.46981 * 150.00382 * 28 26 24 32 32 H 1.09006 * 109.46841 * 270.12505 * 1 2 3 33 33 H 1.09002 * 109.46471 * 30.12185 * 1 2 3 34 34 H 1.08996 * 109.47210 * 150.12311 * 1 2 3 35 35 H 1.07999 * 125.65426 * 359.97438 * 3 2 1 36 36 H 1.07997 * 125.98918 * 179.97438 * 5 4 3 37 37 H 1.08995 * 110.37178 * 86.07916 * 9 7 6 38 38 H 1.08999 * 110.46093 * 323.80207 * 9 7 6 39 39 H 1.08998 * 110.32484 * 336.26694 * 15 13 11 40 40 H 1.09005 * 110.32117 * 98.47796 * 15 13 11 41 41 H 1.09000 * 110.31962 * 118.89799 * 16 15 13 42 42 H 1.08999 * 110.32439 * 241.10154 * 16 15 13 43 43 H 1.09005 * 110.41076 * 142.62666 * 17 16 15 44 44 H 1.08995 * 110.41258 * 265.06723 * 17 16 15 45 45 H 1.09003 * 109.46634 * 60.00219 * 19 18 13 46 46 H 1.08990 * 109.47333 * 180.02562 * 19 18 13 47 47 H 1.09005 * 109.46854 * 300.00974 * 19 18 13 48 48 H 1.08998 * 109.88325 * 239.52134 * 20 10 9 49 49 H 1.08999 * 110.01682 * 118.42782 * 20 10 9 50 50 H 0.96996 * 120.00499 * 93.54301 * 23 21 20 51 51 H 0.97001 * 119.99885 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 -0.0058 5 6 3.5461 -0.6506 -0.0044 6 6 2.2773 -1.1018 0.0019 7 6 1.8363 -2.5429 0.0049 8 1 0.8125 -2.6373 -0.3571 9 6 1.9863 -3.1664 1.4150 10 7 2.1290 -4.6139 1.1744 11 6 1.8358 -5.5895 2.0568 12 8 1.4146 -5.3048 3.1579 13 6 2.0315 -7.0343 1.6753 14 1 2.9716 -7.1609 1.1384 15 6 0.8490 -7.5287 0.8146 16 6 0.6061 -8.9839 1.2654 17 6 1.6617 -9.2459 2.3609 18 7 2.0017 -7.8979 2.8837 19 6 3.3078 -7.9077 3.5561 20 6 2.6448 -4.8168 -0.1873 21 6 2.8046 -3.4226 -0.8293 22 1 3.8311 -3.0689 -0.7329 23 7 2.3977 -3.4501 -2.2364 24 6 3.2998 -3.8063 -3.2031 25 1 4.3113 -4.0666 -2.9282 26 6 2.9142 -3.8329 -4.5363 27 7 1.6816 -3.5152 -4.8714 28 14 4.1450 -4.3182 -5.8551 29 1 4.8527 -3.1067 -6.3416 30 1 5.1305 -5.2719 -5.2855 31 1 3.4302 -4.9617 -6.9865 32 1 -0.3633 0.0022 1.0277 33 1 -0.3632 0.8889 -0.5158 34 1 -0.3633 -0.8910 -0.5119 35 1 1.9337 2.1144 -0.0004 36 1 4.4369 -1.2613 -0.0086 37 1 1.0981 -2.9673 2.0144 38 1 2.8740 -2.7752 1.9121 39 1 -0.0362 -6.9212 1.0028 40 1 1.1119 -7.4989 -0.2428 41 1 -0.3984 -9.0906 1.6748 42 1 0.7496 -9.6682 0.4293 43 1 1.2419 -9.8664 3.1527 44 1 2.5444 -9.7207 1.9324 45 1 3.5688 -6.8933 3.8577 46 1 3.2582 -8.5477 4.4369 47 1 4.0657 -8.2896 2.8720 48 1 1.9392 -5.4128 -0.7661 49 1 3.6109 -5.3202 -0.1492 50 1 1.4894 -3.2160 -2.4833 51 1 1.4123 -3.5334 -5.8031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070629217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:09 Heat of formation + Delta-G solvation = 63.376781 kcal Electronic energy + Delta-G solvation = -31918.497930 eV Core-core repulsion = 27854.692125 eV Total energy + Delta-G solvation = -4063.805805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.88256 -40.25233 -38.52161 -37.04415 -34.14040 -33.82436 -32.53360 -32.10638 -30.76526 -29.63393 -27.69804 -27.39664 -26.81516 -25.78368 -24.26775 -23.29910 -21.74025 -21.45336 -21.08041 -20.41459 -19.36065 -18.85982 -17.54987 -17.13670 -16.69955 -16.13229 -15.78101 -15.58632 -15.43922 -14.65423 -14.51620 -14.30329 -14.11293 -13.89740 -13.62353 -13.51247 -13.34244 -13.14733 -12.97630 -12.81722 -12.65583 -12.59904 -12.45517 -12.06697 -12.00847 -11.79526 -11.65656 -11.57115 -11.39026 -11.16897 -10.93061 -10.90400 -10.75919 -10.51408 -10.17566 -9.87440 -9.66281 -9.59627 -9.32261 -9.09257 -8.59266 -8.39299 -8.01062 -7.16928 -5.91396 -3.22349 2.26609 2.79929 2.90955 3.09088 3.36125 3.41950 3.43063 3.46944 3.96211 4.43061 4.48552 4.50033 4.76043 4.76999 4.80206 4.86310 4.91643 5.01126 5.05530 5.09029 5.14526 5.26051 5.29483 5.33954 5.39174 5.43168 5.51253 5.52535 5.53648 5.64087 5.68344 5.71119 5.77789 5.80767 5.83556 5.96466 5.97684 6.02454 6.07021 6.20054 6.25815 6.43950 6.56806 6.66322 6.74301 6.82642 7.02786 7.42157 7.57755 7.74177 8.24859 8.34186 8.40188 9.37870 9.88752 10.23615 11.30497 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007420 B = 0.004183 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.438435 B = 6692.857210 C = 9428.897918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.458 5.458 3 C 0.171 3.829 4 N -0.494 5.494 5 C -0.015 4.015 6 C 0.007 3.993 7 C -0.036 4.036 8 H 0.089 0.911 9 C 0.125 3.875 10 N -0.615 5.615 11 C 0.538 3.462 12 O -0.530 6.530 13 C 0.048 3.952 14 H 0.075 0.925 15 C -0.112 4.112 16 C -0.122 4.122 17 C 0.032 3.968 18 N -0.492 5.492 19 C 0.015 3.985 20 C 0.071 3.929 21 C 0.187 3.813 22 H 0.073 0.927 23 N -0.708 5.708 24 C -0.247 4.247 25 H 0.073 0.927 26 C -0.005 4.005 27 N -0.929 5.929 28 Si 0.906 3.094 29 H -0.288 1.288 30 H -0.280 1.280 31 H -0.291 1.291 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.200 0.800 36 H 0.166 0.834 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.046 0.954 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.028 0.972 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.386 0.614 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 -3.594 12.865 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.141 5.141 3 C -0.110 4.110 4 N -0.212 5.212 5 C -0.163 4.163 6 C -0.107 4.107 7 C -0.057 4.057 8 H 0.107 0.893 9 C 0.001 3.999 10 N -0.350 5.350 11 C 0.325 3.675 12 O -0.406 6.406 13 C -0.063 4.063 14 H 0.092 0.908 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.096 4.096 18 N -0.216 5.216 19 C -0.133 4.133 20 C -0.055 4.055 21 C 0.074 3.926 22 H 0.091 0.909 23 N -0.347 5.347 24 C -0.377 4.377 25 H 0.091 0.909 26 C -0.202 4.202 27 N -0.577 5.577 28 Si 0.737 3.263 29 H -0.216 1.216 30 H -0.206 1.206 31 H -0.218 1.218 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.217 0.783 36 H 0.183 0.817 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.046 0.954 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.220 0.780 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.989 -2.838 13.768 14.372 hybrid contribution 0.243 -0.907 -1.652 1.900 sum -2.746 -3.746 12.116 12.976 Atomic orbital electron populations 1.22020 0.77020 1.04920 1.03165 1.45205 1.07386 1.06745 1.54767 1.24781 0.85801 0.93188 1.07272 1.70235 1.19350 1.12140 1.19480 1.21935 0.95770 0.90774 1.07832 1.20705 0.91085 0.88515 1.10428 1.20977 1.01267 0.87833 0.95632 0.89323 1.22100 1.01982 0.79946 0.95841 1.48502 1.64958 1.05922 1.15635 1.19908 0.77578 0.86129 0.83867 1.90670 1.45191 1.83447 1.21309 1.22585 1.00189 0.91512 0.92042 0.90751 1.22222 0.97238 0.96358 0.99207 1.22287 0.99688 0.96107 0.97922 1.23155 0.98032 0.90914 0.97459 1.65053 1.29050 1.06331 1.21188 1.22520 0.88940 1.02925 0.98939 1.23382 0.98769 1.02503 0.80830 1.21194 0.96527 0.89464 0.85393 0.90895 1.42293 1.12819 1.80816 0.98795 1.19204 0.93017 1.38765 0.86749 0.90876 1.24730 0.96448 1.01803 0.97195 1.69651 1.16559 1.54341 1.17118 0.86211 0.80240 0.78137 0.81707 1.21553 1.20603 1.21758 0.90767 0.89549 0.89446 0.78315 0.81661 0.90915 0.91123 0.90593 0.89858 0.90729 0.90828 0.89760 0.93608 0.91110 0.90978 0.95356 0.90489 0.92033 0.78011 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 11.00 59.85 0.66 1.35 16 2 N -0.46 -6.28 3.15 -121.36 -0.38 -6.66 16 3 C 0.17 2.41 12.56 -90.38 -1.14 1.27 16 4 N -0.49 -8.53 11.25 -14.67 -0.16 -8.69 16 5 C -0.02 -0.26 11.02 -17.81 -0.20 -0.46 16 6 C 0.01 0.12 5.95 -81.60 -0.49 -0.37 16 7 C -0.04 -0.54 2.94 -89.62 -0.26 -0.81 16 8 H 0.09 1.37 6.97 -51.93 -0.36 1.00 16 9 C 0.12 1.81 6.36 -2.53 -0.02 1.80 16 10 N -0.62 -9.28 3.33 -170.52 -0.57 -9.85 16 11 C 0.54 8.55 6.74 -10.98 -0.07 8.48 16 12 O -0.53 -10.07 16.82 5.56 0.09 -9.98 16 13 C 0.05 0.65 2.03 -67.22 -0.14 0.51 16 14 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 15 C -0.11 -1.35 6.38 -25.34 -0.16 -1.51 16 16 C -0.12 -1.21 7.00 -25.35 -0.18 -1.39 16 17 C 0.03 0.33 6.49 -2.20 -0.01 0.31 16 18 N -0.49 -6.35 4.92 -231.74 -1.14 -7.49 16 19 C 0.02 0.17 9.44 60.07 0.57 0.74 16 20 C 0.07 1.12 6.05 -3.06 -0.02 1.10 16 21 C 0.19 3.27 2.97 -66.10 -0.20 3.07 16 22 H 0.07 1.31 6.58 -51.93 -0.34 0.97 16 23 N -0.71 -15.71 5.18 -51.65 -0.27 -15.98 16 24 C -0.25 -6.22 9.98 -15.06 -0.15 -6.37 16 25 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 26 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 27 N -0.93 -26.27 13.06 55.49 0.72 -25.55 16 28 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 31 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.89 7.13 -51.93 -0.37 0.52 16 35 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.17 2.68 7.16 -52.49 -0.38 2.30 16 37 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 38 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 39 H 0.08 1.00 7.85 -51.93 -0.41 0.59 16 40 H 0.08 0.98 7.80 -51.93 -0.40 0.58 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.42 7.90 -51.93 -0.41 0.01 16 45 H 0.07 0.90 7.96 -51.93 -0.41 0.48 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.03 0.28 7.97 -51.93 -0.41 -0.13 16 48 H 0.08 1.28 7.51 -51.93 -0.39 0.89 16 49 H 0.06 0.92 7.99 -51.93 -0.42 0.51 16 50 H 0.39 9.25 7.71 -40.82 -0.31 8.94 16 51 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 408.17 15.07 6.15 6.15 Total: -1.00 -32.81 408.17 -10.82 -43.63 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -8.35 Total: 10.68 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.90 Total: 7.49 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -1.80 Total: -74.22 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.81 -10.82 -43.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070629217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.009 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds