Wall clock time and date at job start Wed Apr 1 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35043 * 126.39976 * 2 1 4 4 N 1.30500 * 108.70074 * 180.26722 * 3 2 1 5 5 C 1.34133 * 109.25645 * 359.76540 * 4 3 2 6 6 C 1.34668 * 108.01759 * 0.02562 * 5 4 3 7 7 C 1.50708 * 126.59065 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.91349 * 201.12220 * 7 6 5 9 9 C 1.54908 * 111.00100 * 77.22039 * 7 6 5 10 10 N 1.47424 * 104.82942 * 204.91648 * 9 7 6 11 11 C 1.34780 * 125.64682 * 204.09192 * 10 9 7 12 12 O 1.21277 * 120.00540 * 0.02562 * 11 10 9 13 13 C 1.50710 * 119.99716 * 180.02562 * 11 10 9 14 14 H 1.08996 * 110.36459 * 42.34833 * 13 11 10 15 15 C 1.54385 * 110.40780 * 279.99950 * 13 11 10 16 16 C 1.54263 * 105.05731 * 217.36779 * 15 13 11 17 17 C 1.54375 * 105.05941 * 0.02562 * 16 15 13 18 18 N 1.48559 * 110.40818 * 164.83020 * 13 11 10 19 19 C 1.46903 * 110.99967 * 277.81354 * 18 13 11 20 20 C 1.47020 * 108.70507 * 24.13033 * 10 9 7 21 21 C 1.54324 * 107.27181 * 358.93813 * 20 10 9 22 22 H 1.09006 * 110.72009 * 96.34264 * 21 20 10 23 23 N 1.46496 * 110.72507 * 219.44845 * 21 20 10 24 24 C 1.36945 * 119.99718 * 273.54571 * 23 21 20 25 25 H 1.07997 * 119.99756 * 359.97438 * 24 23 21 26 26 C 1.38805 * 119.99878 * 179.97438 * 24 23 21 27 27 N 1.31624 * 120.00257 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 119.99929 * 179.97438 * 26 24 23 29 29 H 1.48498 * 109.47174 * 270.00277 * 28 26 24 30 30 H 1.48501 * 109.47062 * 30.00228 * 28 26 24 31 31 H 1.48499 * 109.46981 * 150.00382 * 28 26 24 32 32 H 1.09006 * 109.46841 * 270.12505 * 1 2 3 33 33 H 1.09002 * 109.46471 * 30.12185 * 1 2 3 34 34 H 1.08996 * 109.47210 * 150.12311 * 1 2 3 35 35 H 1.07999 * 125.65426 * 359.97438 * 3 2 1 36 36 H 1.07997 * 125.98918 * 179.97438 * 5 4 3 37 37 H 1.08995 * 110.37178 * 86.07916 * 9 7 6 38 38 H 1.08999 * 110.46093 * 323.80207 * 9 7 6 39 39 H 1.08998 * 110.32484 * 336.26694 * 15 13 11 40 40 H 1.09005 * 110.32117 * 98.47796 * 15 13 11 41 41 H 1.09000 * 110.31962 * 118.89799 * 16 15 13 42 42 H 1.08999 * 110.32439 * 241.10154 * 16 15 13 43 43 H 1.09005 * 110.41076 * 142.62666 * 17 16 15 44 44 H 1.08995 * 110.41258 * 265.06723 * 17 16 15 45 45 H 1.09003 * 109.46634 * 60.00219 * 19 18 13 46 46 H 1.08990 * 109.47333 * 180.02562 * 19 18 13 47 47 H 1.09005 * 109.46854 * 300.00974 * 19 18 13 48 48 H 1.08998 * 109.88325 * 239.52134 * 20 10 9 49 49 H 1.08999 * 110.01682 * 118.42782 * 20 10 9 50 50 H 0.96996 * 120.00499 * 93.54301 * 23 21 20 51 51 H 0.97001 * 119.99885 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 -0.0058 5 6 3.5461 -0.6506 -0.0044 6 6 2.2773 -1.1018 0.0019 7 6 1.8363 -2.5429 0.0049 8 1 0.8125 -2.6373 -0.3571 9 6 1.9863 -3.1664 1.4150 10 7 2.1290 -4.6139 1.1744 11 6 1.8358 -5.5895 2.0568 12 8 1.4146 -5.3048 3.1579 13 6 2.0315 -7.0343 1.6753 14 1 2.9716 -7.1609 1.1384 15 6 0.8490 -7.5287 0.8146 16 6 0.6061 -8.9839 1.2654 17 6 1.6617 -9.2459 2.3609 18 7 2.0017 -7.8979 2.8837 19 6 3.3078 -7.9077 3.5561 20 6 2.6448 -4.8168 -0.1873 21 6 2.8046 -3.4226 -0.8293 22 1 3.8311 -3.0689 -0.7329 23 7 2.3977 -3.4501 -2.2364 24 6 3.2998 -3.8063 -3.2031 25 1 4.3113 -4.0666 -2.9282 26 6 2.9142 -3.8329 -4.5363 27 7 1.6816 -3.5152 -4.8714 28 14 4.1450 -4.3182 -5.8551 29 1 4.8527 -3.1067 -6.3416 30 1 5.1305 -5.2719 -5.2855 31 1 3.4302 -4.9617 -6.9865 32 1 -0.3633 0.0022 1.0277 33 1 -0.3632 0.8889 -0.5158 34 1 -0.3633 -0.8910 -0.5119 35 1 1.9337 2.1144 -0.0004 36 1 4.4369 -1.2613 -0.0086 37 1 1.0981 -2.9673 2.0144 38 1 2.8740 -2.7752 1.9121 39 1 -0.0362 -6.9212 1.0028 40 1 1.1119 -7.4989 -0.2428 41 1 -0.3984 -9.0906 1.6748 42 1 0.7496 -9.6682 0.4293 43 1 1.2419 -9.8664 3.1527 44 1 2.5444 -9.7207 1.9324 45 1 3.5688 -6.8933 3.8577 46 1 3.2582 -8.5477 4.4369 47 1 4.0657 -8.2896 2.8720 48 1 1.9392 -5.4128 -0.7661 49 1 3.6109 -5.3202 -0.1492 50 1 1.4894 -3.2160 -2.4833 51 1 1.4123 -3.5334 -5.8031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070629217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:08 Heat of formation + Delta-G solvation = 42.298793 kcal Electronic energy + Delta-G solvation = -31919.411941 eV Core-core repulsion = 27854.692125 eV Total energy + Delta-G solvation = -4064.719816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.04308 -41.43447 -39.65338 -38.34085 -35.86178 -34.89249 -33.84300 -33.13117 -32.42619 -30.64942 -29.18305 -28.61631 -27.75209 -26.68200 -25.91741 -24.68893 -22.98057 -22.58359 -21.93526 -21.67310 -20.65114 -20.05248 -19.17562 -18.44284 -17.94987 -17.22683 -17.00597 -16.72923 -16.50587 -16.28663 -15.66334 -15.43565 -15.30452 -15.08095 -15.00713 -14.76454 -14.59998 -14.44692 -14.14019 -13.89641 -13.80124 -13.64367 -13.48193 -13.31180 -13.14458 -12.97452 -12.92247 -12.69273 -12.66554 -12.58995 -12.35783 -12.15075 -12.06414 -11.83043 -11.76151 -11.56990 -11.05587 -10.88718 -10.81139 -10.42690 -9.69860 -9.51448 -9.26919 -9.01829 -7.93099 -5.21943 1.10817 1.50054 1.52221 1.55012 1.58642 1.77169 2.01290 2.24966 2.57276 3.00003 3.34389 3.37257 3.54529 3.60129 3.66403 3.73391 3.90688 3.92609 3.98990 3.99866 4.10130 4.16632 4.21456 4.29295 4.39644 4.43430 4.44912 4.46738 4.52343 4.54243 4.61528 4.68342 4.70258 4.77470 4.84805 4.91269 4.93580 4.95454 5.00716 5.06738 5.15159 5.20960 5.26538 5.47351 5.57138 5.72102 5.80570 5.96778 6.26758 6.37551 6.46626 7.13417 7.16633 7.36082 8.04161 8.29110 9.29587 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007420 B = 0.004183 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.438435 B = 6692.857210 C = 9428.897918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.458 5.458 3 C 0.180 3.820 4 N -0.534 5.534 5 C -0.039 4.039 6 C -0.003 4.003 7 C -0.018 4.018 8 H 0.087 0.913 9 C 0.131 3.869 10 N -0.612 5.612 11 C 0.536 3.464 12 O -0.564 6.564 13 C 0.050 3.950 14 H 0.082 0.918 15 C -0.112 4.112 16 C -0.118 4.118 17 C 0.033 3.967 18 N -0.516 5.516 19 C 0.017 3.983 20 C 0.087 3.913 21 C 0.184 3.816 22 H 0.070 0.930 23 N -0.715 5.715 24 C -0.235 4.235 25 H 0.080 0.920 26 C -0.064 4.064 27 N -0.965 5.965 28 Si 0.961 3.039 29 H -0.295 1.295 30 H -0.266 1.266 31 H -0.298 1.298 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.241 0.759 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.375 0.625 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 -4.304 13.531 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.140 5.140 3 C -0.102 4.102 4 N -0.252 5.252 5 C -0.187 4.187 6 C -0.119 4.119 7 C -0.039 4.039 8 H 0.106 0.894 9 C 0.007 3.993 10 N -0.346 5.346 11 C 0.325 3.675 12 O -0.442 6.442 13 C -0.062 4.062 14 H 0.100 0.900 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.094 4.094 18 N -0.240 5.240 19 C -0.131 4.131 20 C -0.039 4.039 21 C 0.073 3.927 22 H 0.088 0.912 23 N -0.354 5.354 24 C -0.367 4.367 25 H 0.098 0.902 26 C -0.257 4.257 27 N -0.615 5.615 28 Si 0.791 3.209 29 H -0.223 1.223 30 H -0.191 1.191 31 H -0.225 1.225 32 H 0.114 0.886 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.257 0.743 36 H 0.179 0.821 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.060 0.940 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.208 0.792 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.019 -3.570 14.476 15.212 hybrid contribution 0.242 -0.608 -1.744 1.863 sum -2.777 -4.178 12.732 13.684 Atomic orbital electron populations 1.22328 0.74575 1.05855 1.04914 1.45447 1.08888 1.05964 1.53751 1.25583 0.85053 0.94742 1.04856 1.70195 1.21424 1.12212 1.21395 1.22036 0.96341 0.91236 1.09054 1.20680 0.91210 0.89113 1.10917 1.20752 1.00353 0.87570 0.95265 0.89445 1.22059 1.02187 0.79655 0.95369 1.48500 1.64625 1.06189 1.15278 1.20423 0.76611 0.87181 0.83254 1.90647 1.46821 1.84082 1.22655 1.22585 1.00950 0.89904 0.92714 0.90016 1.22223 0.96044 0.97671 0.99092 1.22307 0.99923 0.94758 0.98556 1.23238 0.98587 0.89671 0.97866 1.65042 1.30011 1.07735 1.21233 1.22509 0.88769 1.02097 0.99742 1.23038 0.99187 1.00895 0.80805 1.21293 0.96896 0.90946 0.83596 0.91212 1.42349 1.11900 1.80880 1.00271 1.19548 0.93500 1.36305 0.87299 0.90247 1.25378 0.97829 1.03311 0.99133 1.69785 1.18179 1.56757 1.16770 0.85322 0.78565 0.77613 0.79359 1.22288 1.19079 1.22518 0.88601 0.86934 0.90255 0.74316 0.82118 0.90686 0.90911 0.92172 0.89678 0.90424 0.88986 0.88549 0.92255 0.93144 0.89513 0.94007 0.91199 0.90871 0.79216 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 11.00 127.77 1.41 2.51 16 2 N -0.46 -11.92 3.15 -537.86 -1.70 -13.62 16 3 C 0.18 4.75 12.56 180.26 2.26 7.02 16 4 N -0.53 -18.20 11.25 -200.31 -2.25 -20.45 16 5 C -0.04 -1.35 11.02 83.52 0.92 -0.43 16 6 C 0.00 -0.10 5.95 40.95 0.24 0.14 16 7 C -0.02 -0.55 2.94 -10.15 -0.03 -0.58 16 8 H 0.09 2.68 6.97 -2.39 -0.02 2.66 16 9 C 0.13 3.75 6.36 86.85 0.55 4.30 16 10 N -0.61 -18.16 3.33 -811.80 -2.70 -20.86 16 11 C 0.54 16.84 6.74 87.66 0.59 17.43 16 12 O -0.56 -21.40 16.82 -3.02 -0.05 -21.45 16 13 C 0.05 1.29 2.03 44.32 0.09 1.38 16 14 H 0.08 1.96 7.52 -2.39 -0.02 1.94 16 15 C -0.11 -2.58 6.38 31.49 0.20 -2.37 16 16 C -0.12 -2.08 7.00 31.49 0.22 -1.86 16 17 C 0.03 0.59 6.49 86.45 0.56 1.16 16 18 N -0.52 -12.55 4.92 -887.07 -4.36 -16.91 16 19 C 0.02 0.36 9.44 127.69 1.21 1.57 16 20 C 0.09 2.65 6.05 86.73 0.53 3.17 16 21 C 0.18 6.38 2.97 46.18 0.14 6.52 16 22 H 0.07 2.50 6.58 -2.38 -0.02 2.49 16 23 N -0.72 -31.83 5.18 -317.33 -1.64 -33.47 16 24 C -0.23 -11.79 9.98 84.03 0.84 -10.95 16 25 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 26 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 27 N -0.96 -55.27 13.06 21.65 0.28 -54.98 16 28 Si 0.96 43.75 29.55 68.60 2.03 45.78 16 29 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 30 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 31 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 32 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.52 7.13 -2.39 -0.02 1.50 16 35 H 0.24 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.16 5.38 7.16 -2.91 -0.02 5.36 16 37 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 38 H 0.07 2.08 8.03 -2.39 -0.02 2.06 16 39 H 0.06 1.56 7.85 -2.39 -0.02 1.54 16 40 H 0.08 1.90 7.80 -2.38 -0.02 1.88 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.06 0.90 7.90 -2.39 -0.02 0.88 16 45 H 0.05 1.25 7.96 -2.39 -0.02 1.23 16 46 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.04 0.75 7.97 -2.38 -0.02 0.74 16 48 H 0.07 2.29 7.51 -2.39 -0.02 2.27 16 49 H 0.07 2.09 7.99 -2.39 -0.02 2.07 16 50 H 0.38 18.23 7.71 -92.71 -0.72 17.51 16 51 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -71.10 408.17 0.01 -71.08 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: 0.21 Total: 38.82 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 10.19 Total: 26.07 kcal Atomic # 7 Polarization: -147.93 SS G_CDS: -12.37 Total: -160.30 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.10 0.01 -71.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070629217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.383 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds