Wall clock time and date at job start Wed Apr 1 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35041 * 126.39615 * 2 1 4 4 N 1.30500 * 108.69953 * 180.26900 * 3 2 1 5 5 C 1.34121 * 109.25736 * 359.76852 * 4 3 2 6 6 C 1.34669 * 108.02008 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.59512 * 179.97438 * 6 5 4 8 8 H 1.08992 * 110.30669 * 205.74850 * 7 6 5 9 9 C 1.54389 * 110.34036 * 83.56946 * 7 6 5 10 10 N 1.48151 * 104.61574 * 217.15944 * 9 7 6 11 11 C 1.34774 * 127.83634 * 219.58838 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.47176 * 180.02562 * 13 11 10 15 15 C 1.48532 * 111.00649 * 52.59955 * 14 13 11 16 16 C 1.54933 * 103.23149 * 159.72149 * 15 14 13 17 17 C 1.54601 * 102.91848 * 322.58710 * 16 15 14 18 18 C 1.47901 * 111.00106 * 169.99913 * 14 13 11 19 19 C 1.48141 * 104.32333 * 39.84914 * 10 9 7 20 20 C 1.54291 * 110.42820 * 327.98706 * 7 6 5 21 21 H 1.09000 * 110.34295 * 0.03856 * 20 7 6 22 22 N 1.46506 * 110.33857 * 237.78644 * 20 7 6 23 23 C 1.36930 * 119.99907 * 155.00098 * 22 20 7 24 24 H 1.08001 * 120.00347 * 359.97438 * 23 22 20 25 25 C 1.38819 * 119.99899 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99749 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99907 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46965 * 90.00056 * 27 25 23 29 29 H 1.48499 * 109.47078 * 210.00134 * 27 25 23 30 30 H 1.48504 * 109.47401 * 330.00161 * 27 25 23 31 31 H 1.09004 * 109.47157 * 270.11984 * 1 2 3 32 32 H 1.08998 * 109.47411 * 30.11871 * 1 2 3 33 33 H 1.08996 * 109.47407 * 150.12437 * 1 2 3 34 34 H 1.08004 * 125.65419 * 359.97438 * 3 2 1 35 35 H 1.08005 * 125.99233 * 180.02562 * 5 4 3 36 36 H 1.09005 * 110.40396 * 98.38173 * 9 7 6 37 37 H 1.09000 * 110.51150 * 335.99338 * 9 7 6 38 38 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 39 39 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 40 40 H 1.08996 * 110.66742 * 278.16100 * 15 14 13 41 41 H 1.09001 * 110.66361 * 41.28502 * 15 14 13 42 42 H 1.08996 * 110.72509 * 204.22922 * 16 15 14 43 43 H 1.08997 * 110.87771 * 81.01366 * 16 15 14 44 44 H 1.08999 * 110.30781 * 263.03956 * 17 16 15 45 45 H 1.09006 * 110.39079 * 140.91716 * 17 16 15 46 46 H 1.09003 * 109.91908 * 333.50437 * 18 14 13 47 47 H 1.09002 * 109.91688 * 94.80183 * 18 14 13 48 48 H 1.09000 * 110.40480 * 78.93757 * 19 10 9 49 49 H 1.09000 * 110.40769 * 201.36582 * 19 10 9 50 50 H 0.97003 * 119.99932 * 334.99957 * 22 20 7 51 51 H 0.97002 * 119.99586 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6903 -0.0058 5 6 3.5460 -0.6504 -0.0046 6 6 2.2772 -1.1017 0.0028 7 6 1.8363 -2.5428 0.0063 8 1 0.8428 -2.6354 -0.4322 9 6 1.8424 -3.1024 1.4451 10 7 2.3079 -4.5014 1.3001 11 6 1.8620 -5.5929 1.9530 12 8 0.9733 -5.4891 2.7717 13 6 2.4678 -6.9426 1.6656 14 7 1.8138 -7.9603 2.4989 15 6 0.3372 -7.9027 2.3489 16 6 -0.1232 -9.3008 2.8322 17 6 0.9871 -10.2343 2.2975 18 6 2.2087 -9.3225 2.0796 19 6 3.3791 -4.4273 0.2795 20 6 2.8468 -3.4170 -0.7653 21 1 3.6637 -2.8046 -1.1471 22 7 2.1783 -4.1185 -1.8641 23 6 2.8975 -4.5206 -2.9578 24 1 3.9574 -4.3202 -3.0106 25 6 2.2642 -5.1858 -3.9987 26 7 0.9726 -5.4305 -3.9341 27 14 3.2452 -5.7336 -5.4910 28 1 3.7685 -7.1046 -5.2633 29 1 2.3671 -5.7315 -6.6886 30 1 4.3798 -4.8003 -5.7075 31 1 -0.3634 0.0021 1.0277 32 1 -0.3634 0.8889 -0.5157 33 1 -0.3634 -0.8910 -0.5119 34 1 1.9334 2.1145 -0.0004 35 1 4.4369 -1.2611 -0.0080 36 1 0.8374 -3.0781 1.8666 37 1 2.5307 -2.5359 2.0724 38 1 2.3248 -7.1885 0.6134 39 1 3.5339 -6.9179 1.8913 40 1 -0.0834 -7.1197 2.9799 41 1 0.0623 -7.7465 1.3057 42 1 -1.0883 -9.5608 2.3974 43 1 -0.1690 -9.3400 3.9205 44 1 0.6795 -10.6865 1.3546 45 1 1.2182 -11.0080 3.0298 46 1 2.4873 -9.3206 1.0258 47 1 3.0445 -9.6702 2.6868 48 1 4.3048 -4.0639 0.7259 49 1 3.5351 -5.4036 -0.1794 50 1 1.2262 -4.2983 -1.8168 51 1 0.5300 -5.8950 -4.6616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070719040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:28 Heat of formation + Delta-G solvation = 67.329385 kcal Electronic energy + Delta-G solvation = -31752.809062 eV Core-core repulsion = 27689.174654 eV Total energy + Delta-G solvation = -4063.634408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.01551 -39.97840 -38.52984 -37.11882 -34.02918 -33.92311 -32.56660 -31.90888 -30.69708 -28.73503 -28.21839 -27.52874 -26.92492 -26.23619 -24.11090 -22.98581 -21.63713 -21.16822 -20.77081 -20.48355 -19.36767 -18.86880 -17.51676 -16.84765 -16.75135 -16.16972 -15.71231 -15.63797 -15.52711 -14.95956 -14.79000 -14.31995 -14.11894 -13.70823 -13.61872 -13.42009 -13.39843 -13.15060 -12.88227 -12.83481 -12.73413 -12.34594 -12.22863 -12.07776 -11.96500 -11.65810 -11.46461 -11.26254 -11.20115 -10.91678 -10.88383 -10.85519 -10.71554 -10.54861 -10.20267 -9.86350 -9.76635 -9.43596 -9.38854 -9.17193 -8.49405 -8.31757 -8.13022 -7.12693 -5.92369 -3.23073 2.15829 2.83935 2.91365 3.11842 3.33830 3.33991 3.40778 3.41604 4.13418 4.43277 4.59781 4.70669 4.72108 4.75031 4.81230 4.86137 4.99155 5.00976 5.07072 5.14362 5.30655 5.39084 5.39763 5.44583 5.46286 5.52115 5.53251 5.59148 5.60450 5.73361 5.75923 5.82954 5.83651 5.87929 5.89751 6.05587 6.08005 6.14519 6.21200 6.24432 6.34476 6.41653 6.55692 6.71166 6.91381 6.94945 6.99844 7.30868 7.56993 7.84133 8.21680 8.24551 8.44959 9.36679 9.89480 10.24054 11.29401 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007124 B = 0.004167 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3929.629203 B = 6718.158015 C = 9604.897213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.458 5.458 3 C 0.170 3.830 4 N -0.494 5.494 5 C -0.023 4.023 6 C 0.004 3.996 7 C -0.038 4.038 8 H 0.089 0.911 9 C 0.122 3.878 10 N -0.614 5.614 11 C 0.541 3.459 12 O -0.541 6.541 13 C 0.031 3.969 14 N -0.503 5.503 15 C 0.030 3.970 16 C -0.125 4.125 17 C -0.131 4.131 18 C 0.033 3.967 19 C 0.070 3.930 20 C 0.179 3.821 21 H 0.078 0.922 22 N -0.712 5.712 23 C -0.247 4.247 24 H 0.074 0.926 25 C -0.007 4.007 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.280 1.280 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.169 0.831 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.384 0.616 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 1.957 11.829 12.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.141 5.141 3 C -0.111 4.111 4 N -0.212 5.212 5 C -0.171 4.171 6 C -0.111 4.111 7 C -0.060 4.060 8 H 0.107 0.893 9 C -0.002 4.002 10 N -0.347 5.347 11 C 0.330 3.670 12 O -0.419 6.419 13 C -0.100 4.100 14 N -0.227 5.227 15 C -0.097 4.097 16 C -0.163 4.163 17 C -0.169 4.169 18 C -0.095 4.095 19 C -0.057 4.057 20 C 0.066 3.934 21 H 0.096 0.904 22 N -0.352 5.352 23 C -0.378 4.378 24 H 0.092 0.908 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.217 0.783 35 H 0.186 0.814 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.107 0.893 50 H 0.218 0.782 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.530 2.507 12.670 12.926 hybrid contribution -0.745 -0.975 -1.962 2.314 sum -1.274 1.531 10.708 10.892 Atomic orbital electron populations 1.22046 0.76864 1.04951 1.03408 1.45254 1.07508 1.06758 1.54591 1.24813 0.85788 0.93239 1.07303 1.70242 1.19352 1.12118 1.19476 1.21995 0.95797 0.90819 1.08455 1.20991 0.91116 0.88878 1.10154 1.20862 1.01599 0.87445 0.96060 0.89280 1.22215 1.00657 0.81749 0.95538 1.48851 1.38090 1.06608 1.41194 1.19990 0.82329 0.84747 0.79972 1.90595 1.31053 1.85609 1.34637 1.22168 1.00261 0.90093 0.97463 1.64698 1.06440 1.01644 1.49958 1.23517 0.87534 0.98143 1.00471 1.22511 0.97814 0.94793 1.01206 1.22390 0.95244 0.98022 1.01235 1.22927 0.98356 0.88854 0.99358 1.23711 0.89275 1.03466 0.89202 1.21244 0.93658 0.90713 0.87757 0.90401 1.42449 1.08771 1.67147 1.16870 1.19236 0.92685 1.30467 0.95364 0.90798 1.24751 0.95774 1.01142 0.98720 1.69661 1.08268 1.46355 1.33409 0.86212 0.78945 0.78578 0.82589 1.21618 1.21767 1.20532 0.90608 0.89530 0.89318 0.78252 0.81420 0.90512 0.91063 0.90880 0.88029 0.87178 0.94108 0.91322 0.90978 0.91542 0.91219 0.93409 0.90358 0.91728 0.89343 0.78185 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 11.01 59.84 0.66 1.29 16 2 N -0.46 -5.78 3.15 -121.37 -0.38 -6.17 16 3 C 0.17 2.16 12.56 -90.38 -1.14 1.02 16 4 N -0.49 -7.72 11.25 -14.67 -0.16 -7.88 16 5 C -0.02 -0.35 10.68 -17.82 -0.19 -0.54 16 6 C 0.00 0.06 5.81 -81.60 -0.47 -0.42 16 7 C -0.04 -0.58 3.10 -90.37 -0.28 -0.86 16 8 H 0.09 1.46 6.69 -51.93 -0.35 1.12 16 9 C 0.12 1.77 6.57 -2.41 -0.02 1.75 16 10 N -0.61 -9.60 3.31 -169.05 -0.56 -10.16 16 11 C 0.54 9.08 7.63 -10.98 -0.08 9.00 16 12 O -0.54 -10.29 13.79 5.56 0.08 -10.21 16 13 C 0.03 0.46 4.49 -4.98 -0.02 0.44 16 14 N -0.50 -7.35 5.26 -231.90 -1.22 -8.57 16 15 C 0.03 0.45 5.30 -1.90 -0.01 0.44 16 16 C -0.13 -1.48 7.06 -24.87 -0.18 -1.66 16 17 C -0.13 -1.42 6.93 -25.37 -0.18 -1.60 16 18 C 0.03 0.40 6.69 -2.76 -0.02 0.38 16 19 C 0.07 1.07 6.66 -2.20 -0.01 1.05 16 20 C 0.18 3.10 3.21 -66.31 -0.21 2.89 16 21 H 0.08 1.38 6.31 -51.93 -0.33 1.05 16 22 N -0.71 -15.95 5.13 -51.86 -0.27 -16.21 16 23 C -0.25 -6.23 9.96 -15.06 -0.15 -6.38 16 24 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -26.45 13.06 55.49 0.72 -25.73 16 27 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.88 7.16 -51.93 -0.37 0.51 16 34 H 0.20 1.71 8.06 -52.48 -0.42 1.28 16 35 H 0.17 2.35 7.42 -52.48 -0.39 1.96 16 36 H 0.08 1.14 7.88 -51.93 -0.41 0.73 16 37 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 38 H 0.07 1.16 7.63 -51.93 -0.40 0.76 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.11 1.84 5.97 -51.93 -0.31 1.53 16 41 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.59 7.57 -51.93 -0.39 0.20 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 1.47 7.23 -51.93 -0.38 1.10 16 50 H 0.38 9.44 7.55 -40.82 -0.31 9.13 16 51 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 403.74 15.07 6.08 6.08 Total: -1.00 -32.05 403.74 -11.35 -43.40 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -8.23 Total: 12.70 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -2.40 Total: 6.52 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -1.87 Total: -74.72 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.05 -11.35 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070719040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.733 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds