Wall clock time and date at job start Wed Apr 1 2020 05:55:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.35041 * 126.39615 * 2 1
4 4 N 1.30500 * 108.69953 * 180.26900 * 3 2 1
5 5 C 1.34121 * 109.25736 * 359.76852 * 4 3 2
6 6 C 1.34669 * 108.02008 * 359.97438 * 5 4 3
7 7 C 1.50700 * 126.59512 * 179.97438 * 6 5 4
8 8 H 1.08992 * 110.30669 * 205.74850 * 7 6 5
9 9 C 1.54389 * 110.34036 * 83.56946 * 7 6 5
10 10 N 1.48151 * 104.61574 * 217.15944 * 9 7 6
11 11 C 1.34774 * 127.83634 * 219.58838 * 10 9 7
12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9
13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9
14 14 N 1.46893 * 109.47176 * 180.02562 * 13 11 10
15 15 C 1.48532 * 111.00649 * 52.59955 * 14 13 11
16 16 C 1.54933 * 103.23149 * 159.72149 * 15 14 13
17 17 C 1.54601 * 102.91848 * 322.58710 * 16 15 14
18 18 C 1.47901 * 111.00106 * 169.99913 * 14 13 11
19 19 C 1.48141 * 104.32333 * 39.84914 * 10 9 7
20 20 C 1.54291 * 110.42820 * 327.98706 * 7 6 5
21 21 H 1.09000 * 110.34295 * 0.03856 * 20 7 6
22 22 N 1.46506 * 110.33857 * 237.78644 * 20 7 6
23 23 C 1.36930 * 119.99907 * 155.00098 * 22 20 7
24 24 H 1.08001 * 120.00347 * 359.97438 * 23 22 20
25 25 C 1.38819 * 119.99899 * 179.97438 * 23 22 20
26 26 N 1.31617 * 119.99749 * 359.97438 * 25 23 22
27 27 Si 1.86798 * 119.99907 * 179.97438 * 25 23 22
28 28 H 1.48499 * 109.46965 * 90.00056 * 27 25 23
29 29 H 1.48499 * 109.47078 * 210.00134 * 27 25 23
30 30 H 1.48504 * 109.47401 * 330.00161 * 27 25 23
31 31 H 1.09004 * 109.47157 * 270.11984 * 1 2 3
32 32 H 1.08998 * 109.47411 * 30.11871 * 1 2 3
33 33 H 1.08996 * 109.47407 * 150.12437 * 1 2 3
34 34 H 1.08004 * 125.65419 * 359.97438 * 3 2 1
35 35 H 1.08005 * 125.99233 * 180.02562 * 5 4 3
36 36 H 1.09005 * 110.40396 * 98.38173 * 9 7 6
37 37 H 1.09000 * 110.51150 * 335.99338 * 9 7 6
38 38 H 1.09001 * 109.46953 * 299.99667 * 13 11 10
39 39 H 1.09000 * 109.47318 * 59.99264 * 13 11 10
40 40 H 1.08996 * 110.66742 * 278.16100 * 15 14 13
41 41 H 1.09001 * 110.66361 * 41.28502 * 15 14 13
42 42 H 1.08996 * 110.72509 * 204.22922 * 16 15 14
43 43 H 1.08997 * 110.87771 * 81.01366 * 16 15 14
44 44 H 1.08999 * 110.30781 * 263.03956 * 17 16 15
45 45 H 1.09006 * 110.39079 * 140.91716 * 17 16 15
46 46 H 1.09003 * 109.91908 * 333.50437 * 18 14 13
47 47 H 1.09002 * 109.91688 * 94.80183 * 18 14 13
48 48 H 1.09000 * 110.40480 * 78.93757 * 19 10 9
49 49 H 1.09000 * 110.40769 * 201.36582 * 19 10 9
50 50 H 0.97003 * 119.99932 * 334.99957 * 22 20 7
51 51 H 0.97002 * 119.99586 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2662 1.0870 0.0000
4 7 3.5095 0.6903 -0.0058
5 6 3.5460 -0.6504 -0.0046
6 6 2.2772 -1.1017 0.0028
7 6 1.8363 -2.5428 0.0063
8 1 0.8428 -2.6354 -0.4322
9 6 1.8424 -3.1024 1.4451
10 7 2.3079 -4.5014 1.3001
11 6 1.8620 -5.5929 1.9530
12 8 0.9733 -5.4891 2.7717
13 6 2.4678 -6.9426 1.6656
14 7 1.8138 -7.9603 2.4989
15 6 0.3372 -7.9027 2.3489
16 6 -0.1232 -9.3008 2.8322
17 6 0.9871 -10.2343 2.2975
18 6 2.2087 -9.3225 2.0796
19 6 3.3791 -4.4273 0.2795
20 6 2.8468 -3.4170 -0.7653
21 1 3.6637 -2.8046 -1.1471
22 7 2.1783 -4.1185 -1.8641
23 6 2.8975 -4.5206 -2.9578
24 1 3.9574 -4.3202 -3.0106
25 6 2.2642 -5.1858 -3.9987
26 7 0.9726 -5.4305 -3.9341
27 14 3.2452 -5.7336 -5.4910
28 1 3.7685 -7.1046 -5.2633
29 1 2.3671 -5.7315 -6.6886
30 1 4.3798 -4.8003 -5.7075
31 1 -0.3634 0.0021 1.0277
32 1 -0.3634 0.8889 -0.5157
33 1 -0.3634 -0.8910 -0.5119
34 1 1.9334 2.1145 -0.0004
35 1 4.4369 -1.2611 -0.0080
36 1 0.8374 -3.0781 1.8666
37 1 2.5307 -2.5359 2.0724
38 1 2.3248 -7.1885 0.6134
39 1 3.5339 -6.9179 1.8913
40 1 -0.0834 -7.1197 2.9799
41 1 0.0623 -7.7465 1.3057
42 1 -1.0883 -9.5608 2.3974
43 1 -0.1690 -9.3400 3.9205
44 1 0.6795 -10.6865 1.3546
45 1 1.2182 -11.0080 3.0298
46 1 2.4873 -9.3206 1.0258
47 1 3.0445 -9.6702 2.6868
48 1 4.3048 -4.0639 0.7259
49 1 3.5351 -5.4036 -0.1794
50 1 1.2262 -4.2983 -1.8168
51 1 0.5300 -5.8950 -4.6616
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001070719040.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:55:28
Heat of formation + Delta-G solvation = 67.329385 kcal
Electronic energy + Delta-G solvation = -31752.809062 eV
Core-core repulsion = 27689.174654 eV
Total energy + Delta-G solvation = -4063.634408 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-42.01551 -39.97840 -38.52984 -37.11882 -34.02918 -33.92311 -32.56660 -31.90888
-30.69708 -28.73503 -28.21839 -27.52874 -26.92492 -26.23619 -24.11090 -22.98581
-21.63713 -21.16822 -20.77081 -20.48355 -19.36767 -18.86880 -17.51676 -16.84765
-16.75135 -16.16972 -15.71231 -15.63797 -15.52711 -14.95956 -14.79000 -14.31995
-14.11894 -13.70823 -13.61872 -13.42009 -13.39843 -13.15060 -12.88227 -12.83481
-12.73413 -12.34594 -12.22863 -12.07776 -11.96500 -11.65810 -11.46461 -11.26254
-11.20115 -10.91678 -10.88383 -10.85519 -10.71554 -10.54861 -10.20267 -9.86350
-9.76635 -9.43596 -9.38854 -9.17193 -8.49405 -8.31757 -8.13022 -7.12693
-5.92369 -3.23073 2.15829 2.83935 2.91365 3.11842 3.33830 3.33991
3.40778 3.41604 4.13418 4.43277 4.59781 4.70669 4.72108 4.75031
4.81230 4.86137 4.99155 5.00976 5.07072 5.14362 5.30655 5.39084
5.39763 5.44583 5.46286 5.52115 5.53251 5.59148 5.60450 5.73361
5.75923 5.82954 5.83651 5.87929 5.89751 6.05587 6.08005 6.14519
6.21200 6.24432 6.34476 6.41653 6.55692 6.71166 6.91381 6.94945
6.99844 7.30868 7.56993 7.84133 8.21680 8.24551 8.44959 9.36679
9.89480 10.24054 11.29401
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.007124 B = 0.004167 C = 0.002914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3929.629203 B = 6718.158015 C = 9604.897213
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.458 5.458
3 C 0.170 3.830
4 N -0.494 5.494
5 C -0.023 4.023
6 C 0.004 3.996
7 C -0.038 4.038
8 H 0.089 0.911
9 C 0.122 3.878
10 N -0.614 5.614
11 C 0.541 3.459
12 O -0.541 6.541
13 C 0.031 3.969
14 N -0.503 5.503
15 C 0.030 3.970
16 C -0.125 4.125
17 C -0.131 4.131
18 C 0.033 3.967
19 C 0.070 3.930
20 C 0.179 3.821
21 H 0.078 0.922
22 N -0.712 5.712
23 C -0.247 4.247
24 H 0.074 0.926
25 C -0.007 4.007
26 N -0.930 5.930
27 Si 0.906 3.094
28 H -0.289 1.289
29 H -0.291 1.291
30 H -0.280 1.280
31 H 0.075 0.925
32 H 0.086 0.914
33 H 0.088 0.912
34 H 0.201 0.799
35 H 0.169 0.831
36 H 0.076 0.924
37 H 0.071 0.929
38 H 0.073 0.927
39 H 0.102 0.898
40 H 0.110 0.890
41 H 0.041 0.959
42 H 0.068 0.932
43 H 0.071 0.929
44 H 0.066 0.934
45 H 0.069 0.931
46 H 0.048 0.952
47 H 0.078 0.922
48 H 0.065 0.935
49 H 0.088 0.912
50 H 0.384 0.616
51 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.823 1.957 11.829 12.018
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.141 5.141
3 C -0.111 4.111
4 N -0.212 5.212
5 C -0.171 4.171
6 C -0.111 4.111
7 C -0.060 4.060
8 H 0.107 0.893
9 C -0.002 4.002
10 N -0.347 5.347
11 C 0.330 3.670
12 O -0.419 6.419
13 C -0.100 4.100
14 N -0.227 5.227
15 C -0.097 4.097
16 C -0.163 4.163
17 C -0.169 4.169
18 C -0.095 4.095
19 C -0.057 4.057
20 C 0.066 3.934
21 H 0.096 0.904
22 N -0.352 5.352
23 C -0.378 4.378
24 H 0.092 0.908
25 C -0.204 4.204
26 N -0.577 5.577
27 Si 0.737 3.263
28 H -0.216 1.216
29 H -0.218 1.218
30 H -0.205 1.205
31 H 0.094 0.906
32 H 0.105 0.895
33 H 0.107 0.893
34 H 0.217 0.783
35 H 0.186 0.814
36 H 0.095 0.905
37 H 0.089 0.911
38 H 0.091 0.909
39 H 0.120 0.880
40 H 0.128 0.872
41 H 0.059 0.941
42 H 0.087 0.913
43 H 0.090 0.910
44 H 0.085 0.915
45 H 0.088 0.912
46 H 0.066 0.934
47 H 0.096 0.904
48 H 0.083 0.917
49 H 0.107 0.893
50 H 0.218 0.782
51 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -0.530 2.507 12.670 12.926
hybrid contribution -0.745 -0.975 -1.962 2.314
sum -1.274 1.531 10.708 10.892
Atomic orbital electron populations
1.22046 0.76864 1.04951 1.03408 1.45254 1.07508 1.06758 1.54591
1.24813 0.85788 0.93239 1.07303 1.70242 1.19352 1.12118 1.19476
1.21995 0.95797 0.90819 1.08455 1.20991 0.91116 0.88878 1.10154
1.20862 1.01599 0.87445 0.96060 0.89280 1.22215 1.00657 0.81749
0.95538 1.48851 1.38090 1.06608 1.41194 1.19990 0.82329 0.84747
0.79972 1.90595 1.31053 1.85609 1.34637 1.22168 1.00261 0.90093
0.97463 1.64698 1.06440 1.01644 1.49958 1.23517 0.87534 0.98143
1.00471 1.22511 0.97814 0.94793 1.01206 1.22390 0.95244 0.98022
1.01235 1.22927 0.98356 0.88854 0.99358 1.23711 0.89275 1.03466
0.89202 1.21244 0.93658 0.90713 0.87757 0.90401 1.42449 1.08771
1.67147 1.16870 1.19236 0.92685 1.30467 0.95364 0.90798 1.24751
0.95774 1.01142 0.98720 1.69661 1.08268 1.46355 1.33409 0.86212
0.78945 0.78578 0.82589 1.21618 1.21767 1.20532 0.90608 0.89530
0.89318 0.78252 0.81420 0.90512 0.91063 0.90880 0.88029 0.87178
0.94108 0.91322 0.90978 0.91542 0.91219 0.93409 0.90358 0.91728
0.89343 0.78185 0.93386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.63 11.01 59.84 0.66 1.29 16
2 N -0.46 -5.78 3.15 -121.37 -0.38 -6.17 16
3 C 0.17 2.16 12.56 -90.38 -1.14 1.02 16
4 N -0.49 -7.72 11.25 -14.67 -0.16 -7.88 16
5 C -0.02 -0.35 10.68 -17.82 -0.19 -0.54 16
6 C 0.00 0.06 5.81 -81.60 -0.47 -0.42 16
7 C -0.04 -0.58 3.10 -90.37 -0.28 -0.86 16
8 H 0.09 1.46 6.69 -51.93 -0.35 1.12 16
9 C 0.12 1.77 6.57 -2.41 -0.02 1.75 16
10 N -0.61 -9.60 3.31 -169.05 -0.56 -10.16 16
11 C 0.54 9.08 7.63 -10.98 -0.08 9.00 16
12 O -0.54 -10.29 13.79 5.56 0.08 -10.21 16
13 C 0.03 0.46 4.49 -4.98 -0.02 0.44 16
14 N -0.50 -7.35 5.26 -231.90 -1.22 -8.57 16
15 C 0.03 0.45 5.30 -1.90 -0.01 0.44 16
16 C -0.13 -1.48 7.06 -24.87 -0.18 -1.66 16
17 C -0.13 -1.42 6.93 -25.37 -0.18 -1.60 16
18 C 0.03 0.40 6.69 -2.76 -0.02 0.38 16
19 C 0.07 1.07 6.66 -2.20 -0.01 1.05 16
20 C 0.18 3.10 3.21 -66.31 -0.21 2.89 16
21 H 0.08 1.38 6.31 -51.93 -0.33 1.05 16
22 N -0.71 -15.95 5.13 -51.86 -0.27 -16.21 16
23 C -0.25 -6.23 9.96 -15.06 -0.15 -6.38 16
24 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16
25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16
26 N -0.93 -26.45 13.06 55.49 0.72 -25.73 16
27 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16
28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
29 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16
30 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16
33 H 0.09 0.88 7.16 -51.93 -0.37 0.51 16
34 H 0.20 1.71 8.06 -52.48 -0.42 1.28 16
35 H 0.17 2.35 7.42 -52.48 -0.39 1.96 16
36 H 0.08 1.14 7.88 -51.93 -0.41 0.73 16
37 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16
38 H 0.07 1.16 7.63 -51.93 -0.40 0.76 16
39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16
40 H 0.11 1.84 5.97 -51.93 -0.31 1.53 16
41 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16
42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
46 H 0.05 0.59 7.57 -51.93 -0.39 0.20 16
47 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
49 H 0.09 1.47 7.23 -51.93 -0.38 1.10 16
50 H 0.38 9.44 7.55 -40.82 -0.31 9.13 16
51 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
LS Contribution 403.74 15.07 6.08 6.08
Total: -1.00 -32.05 403.74 -11.35 -43.40
By element:
Atomic # 1 Polarization: 20.92 SS G_CDS: -8.23 Total: 12.70 kcal
Atomic # 6 Polarization: 8.92 SS G_CDS: -2.40 Total: 6.52 kcal
Atomic # 7 Polarization: -72.85 SS G_CDS: -1.87 Total: -74.72 kcal
Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -32.05 -11.35 -43.40 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001070719040.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.733 kcal
(2) G-P(sol) polarization free energy of solvation -32.050 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.683 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.354 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds