Wall clock time and date at job start Wed Apr 1 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35041 * 126.39615 * 2 1 4 4 N 1.30500 * 108.69953 * 180.26900 * 3 2 1 5 5 C 1.34121 * 109.25736 * 359.76852 * 4 3 2 6 6 C 1.34669 * 108.02008 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.59512 * 179.97438 * 6 5 4 8 8 H 1.08992 * 110.30669 * 205.74850 * 7 6 5 9 9 C 1.54389 * 110.34036 * 83.56946 * 7 6 5 10 10 N 1.48151 * 104.61574 * 217.15944 * 9 7 6 11 11 C 1.34774 * 127.83634 * 219.58838 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.47176 * 180.02562 * 13 11 10 15 15 C 1.48532 * 111.00649 * 52.59955 * 14 13 11 16 16 C 1.54933 * 103.23149 * 159.72149 * 15 14 13 17 17 C 1.54601 * 102.91848 * 322.58710 * 16 15 14 18 18 C 1.47901 * 111.00106 * 169.99913 * 14 13 11 19 19 C 1.48141 * 104.32333 * 39.84914 * 10 9 7 20 20 C 1.54291 * 110.42820 * 327.98706 * 7 6 5 21 21 H 1.09000 * 110.34295 * 0.03856 * 20 7 6 22 22 N 1.46506 * 110.33857 * 237.78644 * 20 7 6 23 23 C 1.36930 * 119.99907 * 155.00098 * 22 20 7 24 24 H 1.08001 * 120.00347 * 359.97438 * 23 22 20 25 25 C 1.38819 * 119.99899 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99749 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99907 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46965 * 90.00056 * 27 25 23 29 29 H 1.48499 * 109.47078 * 210.00134 * 27 25 23 30 30 H 1.48504 * 109.47401 * 330.00161 * 27 25 23 31 31 H 1.09004 * 109.47157 * 270.11984 * 1 2 3 32 32 H 1.08998 * 109.47411 * 30.11871 * 1 2 3 33 33 H 1.08996 * 109.47407 * 150.12437 * 1 2 3 34 34 H 1.08004 * 125.65419 * 359.97438 * 3 2 1 35 35 H 1.08005 * 125.99233 * 180.02562 * 5 4 3 36 36 H 1.09005 * 110.40396 * 98.38173 * 9 7 6 37 37 H 1.09000 * 110.51150 * 335.99338 * 9 7 6 38 38 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 39 39 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 40 40 H 1.08996 * 110.66742 * 278.16100 * 15 14 13 41 41 H 1.09001 * 110.66361 * 41.28502 * 15 14 13 42 42 H 1.08996 * 110.72509 * 204.22922 * 16 15 14 43 43 H 1.08997 * 110.87771 * 81.01366 * 16 15 14 44 44 H 1.08999 * 110.30781 * 263.03956 * 17 16 15 45 45 H 1.09006 * 110.39079 * 140.91716 * 17 16 15 46 46 H 1.09003 * 109.91908 * 333.50437 * 18 14 13 47 47 H 1.09002 * 109.91688 * 94.80183 * 18 14 13 48 48 H 1.09000 * 110.40480 * 78.93757 * 19 10 9 49 49 H 1.09000 * 110.40769 * 201.36582 * 19 10 9 50 50 H 0.97003 * 119.99932 * 334.99957 * 22 20 7 51 51 H 0.97002 * 119.99586 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6903 -0.0058 5 6 3.5460 -0.6504 -0.0046 6 6 2.2772 -1.1017 0.0028 7 6 1.8363 -2.5428 0.0063 8 1 0.8428 -2.6354 -0.4322 9 6 1.8424 -3.1024 1.4451 10 7 2.3079 -4.5014 1.3001 11 6 1.8620 -5.5929 1.9530 12 8 0.9733 -5.4891 2.7717 13 6 2.4678 -6.9426 1.6656 14 7 1.8138 -7.9603 2.4989 15 6 0.3372 -7.9027 2.3489 16 6 -0.1232 -9.3008 2.8322 17 6 0.9871 -10.2343 2.2975 18 6 2.2087 -9.3225 2.0796 19 6 3.3791 -4.4273 0.2795 20 6 2.8468 -3.4170 -0.7653 21 1 3.6637 -2.8046 -1.1471 22 7 2.1783 -4.1185 -1.8641 23 6 2.8975 -4.5206 -2.9578 24 1 3.9574 -4.3202 -3.0106 25 6 2.2642 -5.1858 -3.9987 26 7 0.9726 -5.4305 -3.9341 27 14 3.2452 -5.7336 -5.4910 28 1 3.7685 -7.1046 -5.2633 29 1 2.3671 -5.7315 -6.6886 30 1 4.3798 -4.8003 -5.7075 31 1 -0.3634 0.0021 1.0277 32 1 -0.3634 0.8889 -0.5157 33 1 -0.3634 -0.8910 -0.5119 34 1 1.9334 2.1145 -0.0004 35 1 4.4369 -1.2611 -0.0080 36 1 0.8374 -3.0781 1.8666 37 1 2.5307 -2.5359 2.0724 38 1 2.3248 -7.1885 0.6134 39 1 3.5339 -6.9179 1.8913 40 1 -0.0834 -7.1197 2.9799 41 1 0.0623 -7.7465 1.3057 42 1 -1.0883 -9.5608 2.3974 43 1 -0.1690 -9.3400 3.9205 44 1 0.6795 -10.6865 1.3546 45 1 1.2182 -11.0080 3.0298 46 1 2.4873 -9.3206 1.0258 47 1 3.0445 -9.6702 2.6868 48 1 4.3048 -4.0639 0.7259 49 1 3.5351 -5.4036 -0.1794 50 1 1.2262 -4.2983 -1.8168 51 1 0.5300 -5.8950 -4.6616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070719040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:27 Heat of formation + Delta-G solvation = 46.792913 kcal Electronic energy + Delta-G solvation = -31753.699590 eV Core-core repulsion = 27689.174654 eV Total energy + Delta-G solvation = -4064.524936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.07532 -41.25289 -39.71765 -38.43331 -35.77569 -34.90422 -33.86503 -33.14555 -32.33114 -29.77467 -29.38189 -29.02056 -27.78606 -27.42480 -25.83523 -24.33324 -22.82327 -22.28440 -21.75573 -21.65721 -20.66974 -20.12021 -19.14809 -18.16618 -17.98324 -17.37194 -16.92155 -16.77435 -16.56352 -16.51364 -15.95287 -15.72961 -15.30900 -15.19295 -15.01751 -14.75126 -14.56817 -14.27972 -14.07215 -13.75790 -13.73575 -13.43595 -13.38810 -13.34858 -13.20716 -13.08474 -12.84671 -12.57514 -12.55513 -12.45712 -12.24441 -12.18679 -11.98251 -11.91109 -11.74481 -11.47430 -11.07113 -10.88562 -10.67926 -10.44598 -9.85359 -9.48831 -9.31078 -8.93365 -7.95223 -5.23961 1.09911 1.47978 1.49452 1.56507 1.56966 1.81380 1.98876 2.24641 2.55236 3.01418 3.34633 3.38383 3.53126 3.72432 3.73493 3.80203 3.92330 3.94888 3.98643 4.06448 4.07736 4.19499 4.27655 4.32247 4.34694 4.35808 4.41620 4.50571 4.59553 4.63919 4.66039 4.69787 4.73051 4.76125 4.88992 4.91753 4.96325 4.97751 5.04433 5.10332 5.19533 5.28175 5.35668 5.46666 5.55497 5.80297 5.81324 5.90106 6.24895 6.36112 6.52925 7.12438 7.16229 7.32740 8.03697 8.27362 9.27646 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007124 B = 0.004167 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3929.629203 B = 6718.158015 C = 9604.897213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.459 5.459 3 C 0.182 3.818 4 N -0.530 5.530 5 C -0.036 4.036 6 C -0.012 4.012 7 C -0.020 4.020 8 H 0.072 0.928 9 C 0.129 3.871 10 N -0.614 5.614 11 C 0.534 3.466 12 O -0.567 6.567 13 C 0.037 3.963 14 N -0.511 5.511 15 C 0.030 3.970 16 C -0.120 4.120 17 C -0.127 4.127 18 C 0.029 3.971 19 C 0.080 3.920 20 C 0.175 3.825 21 H 0.080 0.920 22 N -0.723 5.723 23 C -0.233 4.233 24 H 0.083 0.917 25 C -0.069 4.069 26 N -0.968 5.968 27 Si 0.964 3.036 28 H -0.287 1.287 29 H -0.302 1.302 30 H -0.269 1.269 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.173 0.827 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.018 0.982 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.042 0.958 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.076 0.924 50 H 0.370 0.630 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 2.422 12.821 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.142 5.142 3 C -0.100 4.100 4 N -0.249 5.249 5 C -0.183 4.183 6 C -0.128 4.128 7 C -0.042 4.042 8 H 0.091 0.909 9 C 0.005 3.995 10 N -0.347 5.347 11 C 0.324 3.676 12 O -0.447 6.447 13 C -0.094 4.094 14 N -0.236 5.236 15 C -0.097 4.097 16 C -0.158 4.158 17 C -0.165 4.165 18 C -0.098 4.098 19 C -0.045 4.045 20 C 0.064 3.936 21 H 0.097 0.903 22 N -0.362 5.362 23 C -0.365 4.365 24 H 0.101 0.899 25 C -0.262 4.262 26 N -0.619 5.619 27 Si 0.794 3.206 28 H -0.215 1.215 29 H -0.230 1.230 30 H -0.194 1.194 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.257 0.743 35 H 0.190 0.810 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.106 0.894 41 H 0.036 0.964 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.061 0.939 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.095 0.905 50 H 0.202 0.798 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.560 2.995 13.691 14.026 hybrid contribution -1.071 -0.985 -2.199 2.637 sum -0.512 2.010 11.491 11.677 Atomic orbital electron populations 1.22301 0.74828 1.05675 1.04889 1.45468 1.08797 1.06131 1.53760 1.25612 0.85063 0.94650 1.04707 1.70236 1.21147 1.12187 1.21313 1.22173 0.96235 0.91208 1.08705 1.20823 0.91483 0.88924 1.11551 1.20545 0.99910 0.87927 0.95783 0.90948 1.22224 1.00796 0.81215 0.95222 1.48911 1.38052 1.06939 1.40830 1.20377 0.82022 0.85521 0.79708 1.90588 1.32099 1.86048 1.35935 1.22152 1.01302 0.89259 0.96674 1.64728 1.06055 1.02785 1.50010 1.23396 0.88161 0.99533 0.98626 1.22500 0.98691 0.92928 1.01677 1.22410 0.94019 0.97959 1.02071 1.23052 0.99596 0.87757 0.99391 1.23552 0.90186 1.02180 0.88615 1.21426 0.93945 0.91068 0.87165 0.90268 1.42579 1.08151 1.67659 1.17768 1.19613 0.93103 1.28230 0.95544 0.89900 1.25438 0.96568 1.02649 1.01505 1.69812 1.09799 1.48318 1.33945 0.85279 0.77729 0.78281 0.79337 1.21465 1.22962 1.19352 0.88765 0.86666 0.90769 0.74312 0.81022 0.91004 0.89583 0.92271 0.85933 0.89400 0.96401 0.90317 0.90252 0.91166 0.88983 0.93925 0.88612 0.88387 0.90532 0.79826 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 11.01 127.77 1.41 2.45 16 2 N -0.46 -10.80 3.15 -537.90 -1.70 -12.49 16 3 C 0.18 4.17 12.56 180.26 2.26 6.43 16 4 N -0.53 -15.75 11.25 -200.31 -2.25 -18.00 16 5 C -0.04 -1.06 10.68 83.52 0.89 -0.17 16 6 C -0.01 -0.34 5.81 40.95 0.24 -0.10 16 7 C -0.02 -0.60 3.10 -10.63 -0.03 -0.64 16 8 H 0.07 2.44 6.69 -2.39 -0.02 2.43 16 9 C 0.13 3.65 6.57 86.53 0.57 4.22 16 10 N -0.61 -19.01 3.31 -807.16 -2.67 -21.69 16 11 C 0.53 18.05 7.63 87.66 0.67 18.72 16 12 O -0.57 -21.97 13.79 -3.02 -0.04 -22.01 16 13 C 0.04 1.10 4.49 85.56 0.38 1.48 16 14 N -0.51 -14.76 5.26 -887.59 -4.67 -19.43 16 15 C 0.03 0.93 5.30 86.65 0.46 1.38 16 16 C -0.12 -2.73 7.06 31.80 0.22 -2.51 16 17 C -0.13 -2.53 6.93 31.47 0.22 -2.31 16 18 C 0.03 0.68 6.69 86.44 0.58 1.26 16 19 C 0.08 2.37 6.66 86.67 0.58 2.95 16 20 C 0.17 6.00 3.21 46.04 0.15 6.15 16 21 H 0.08 2.74 6.31 -2.39 -0.02 2.72 16 22 N -0.72 -32.80 5.13 -317.98 -1.63 -34.44 16 23 C -0.23 -11.80 9.96 84.04 0.84 -10.96 16 24 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 25 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 26 N -0.97 -56.65 13.06 21.65 0.28 -56.36 16 27 Si 0.96 44.05 29.55 68.60 2.03 46.08 16 28 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 29 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 30 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.44 7.16 -2.39 -0.02 1.42 16 34 H 0.24 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.17 4.66 7.42 -2.91 -0.02 4.64 16 36 H 0.07 2.13 7.88 -2.38 -0.02 2.11 16 37 H 0.09 2.23 7.86 -2.39 -0.02 2.21 16 38 H 0.06 1.92 7.63 -2.39 -0.02 1.91 16 39 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.09 3.06 5.97 -2.39 -0.01 3.05 16 41 H 0.02 0.61 8.02 -2.39 -0.02 0.59 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.04 1.03 7.57 -2.39 -0.02 1.01 16 47 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.08 2.50 7.23 -2.39 -0.02 2.48 16 50 H 0.37 18.79 7.55 -92.71 -0.70 18.08 16 51 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -70.54 403.74 -0.52 -71.06 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: 0.23 Total: 42.19 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 9.90 Total: 25.09 kcal Atomic # 7 Polarization: -149.77 SS G_CDS: -12.64 Total: -162.41 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.04 Total: -22.01 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -70.54 -0.52 -71.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070719040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.849 kcal (2) G-P(sol) polarization free energy of solvation -70.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds