Wall clock time and date at job start Wed Apr 1 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48530 * 110.99992 * 2 1 4 4 C 1.54939 * 103.22989 * 200.28406 * 3 2 1 5 5 C 1.54598 * 102.91984 * 37.41373 * 4 3 2 6 6 H 1.09002 * 110.39093 * 97.00761 * 5 4 3 7 7 C 1.50703 * 110.30760 * 219.12624 * 5 4 3 8 8 O 1.21283 * 119.99687 * 357.17693 * 7 5 4 9 9 N 1.34777 * 119.99932 * 177.17063 * 7 5 4 10 10 C 1.47422 * 125.64745 * 179.97438 * 9 7 5 11 11 C 1.54910 * 104.83104 * 204.16330 * 10 9 7 12 12 H 1.08995 * 111.00287 * 81.06390 * 11 10 9 13 13 C 1.50706 * 111.00192 * 204.91470 * 11 10 9 14 14 C 1.34670 * 126.58882 * 76.88660 * 13 11 10 15 15 N 1.34128 * 108.01588 * 179.86960 * 14 13 11 16 16 C 1.30503 * 109.25689 * 0.39908 * 15 14 13 17 17 N 1.35038 * 108.69809 * 359.75304 * 16 15 14 18 18 C 1.46506 * 126.39335 * 180.02562 * 17 16 15 19 19 C 1.55158 * 101.58309 * 322.98841 * 11 10 9 20 20 H 1.08996 * 110.87224 * 277.07012 * 19 11 10 21 21 N 1.46492 * 110.72419 * 153.86393 * 19 11 10 22 22 C 1.36935 * 120.00376 * 160.02467 * 21 19 11 23 23 H 1.08003 * 119.99724 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00063 * 180.02562 * 22 21 19 25 25 N 1.31622 * 119.99887 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00212 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 89.99941 * 26 24 22 28 28 H 1.48503 * 109.47261 * 330.00122 * 26 24 22 29 29 H 1.48500 * 109.47454 * 210.00115 * 26 24 22 30 30 C 1.47019 * 125.64888 * 0.02562 * 9 7 5 31 31 C 1.47910 * 110.99689 * 242.60625 * 2 1 3 32 32 H 1.09004 * 109.46633 * 177.39532 * 1 2 3 33 33 H 1.09000 * 109.46992 * 297.38882 * 1 2 3 34 34 H 1.08996 * 109.47352 * 57.39790 * 1 2 3 35 35 H 1.09004 * 110.66396 * 318.71727 * 3 2 1 36 36 H 1.08997 * 110.66472 * 81.67942 * 3 2 1 37 37 H 1.08996 * 110.72070 * 279.05696 * 4 3 2 38 38 H 1.08994 * 110.72219 * 155.77106 * 4 3 2 39 39 H 1.09002 * 110.36511 * 322.99895 * 10 9 7 40 40 H 1.09002 * 110.36636 * 85.21562 * 10 9 7 41 41 H 1.07991 * 125.99061 * 0.02562 * 14 13 11 42 42 H 1.07998 * 125.64728 * 179.73175 * 16 15 14 43 43 H 1.08999 * 109.46999 * 269.99805 * 18 17 16 44 44 H 1.08999 * 109.47199 * 29.99914 * 18 17 16 45 45 H 1.09009 * 109.46787 * 149.99967 * 18 17 16 46 46 H 0.97009 * 119.99477 * 340.03052 * 21 19 11 47 47 H 0.97006 * 119.99732 * 180.02562 * 25 24 22 48 48 H 1.09004 * 109.88125 * 59.48926 * 30 9 7 49 49 H 1.09001 * 109.88754 * 298.33018 * 30 9 7 50 50 H 1.09002 * 109.91643 * 26.48973 * 31 2 1 51 51 H 1.08996 * 109.91855 * 265.19144 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2107 -0.5229 5 6 3.2982 0.1054 -1.5932 6 1 3.2142 0.5472 -2.5861 7 6 4.4717 -0.8386 -1.5394 8 8 5.3807 -0.6323 -0.7634 9 7 4.5109 -1.9121 -2.3533 10 6 5.5931 -2.9117 -2.4055 11 6 5.5015 -3.5217 -3.8265 12 1 5.9882 -2.8786 -4.5597 13 6 6.0857 -4.9105 -3.8569 14 6 5.5042 -6.0361 -3.4002 15 7 6.3486 -7.0559 -3.6152 16 6 7.4346 -6.6036 -4.1801 17 7 7.3116 -5.2694 -4.3486 18 6 8.3047 -4.3736 -4.9466 19 6 3.9667 -3.5589 -4.0511 20 1 3.5286 -4.4457 -3.5933 21 7 3.6505 -3.5059 -5.4805 22 6 2.4275 -3.9295 -5.9275 23 1 1.6957 -4.3023 -5.2261 24 6 2.1282 -3.8797 -7.2820 25 7 0.9524 -4.2864 -7.7116 26 14 3.3935 -3.2342 -8.4951 27 1 4.2364 -4.3583 -8.9763 28 1 4.2513 -2.2240 -7.8251 29 1 2.6991 -2.6074 -9.6484 30 6 3.4819 -2.2795 -3.3371 31 6 1.9990 -0.6354 -1.2260 32 1 -0.3633 -1.0267 -0.0467 33 1 -0.3633 0.4728 0.9125 34 1 -0.3634 0.5537 -0.8657 35 1 1.4236 2.0204 -0.6729 36 1 2.0014 1.7986 1.0091 37 1 4.1115 0.8836 0.2786 38 1 3.8121 2.1352 -0.9717 39 1 6.5607 -2.4311 -2.2606 40 1 5.4355 -3.6812 -1.6497 41 1 4.5282 -6.1059 -2.9434 42 1 8.2902 -7.1979 -4.4652 43 1 8.9683 -3.9959 -4.1688 44 1 8.8876 -4.9203 -5.6878 45 1 7.7967 -3.5379 -5.4282 46 1 4.3078 -3.1707 -6.1105 47 1 0.7434 -4.2520 -8.6582 48 1 3.3578 -1.4748 -4.0618 49 1 2.5367 -2.4735 -2.8301 50 1 1.2757 -0.5402 -2.0360 51 1 2.2123 -1.6873 -1.0367 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070719152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:22 Heat of formation + Delta-G solvation = 42.779269 kcal Electronic energy + Delta-G solvation = -31901.742316 eV Core-core repulsion = 27837.043335 eV Total energy + Delta-G solvation = -4064.698981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.07553 -41.53461 -39.64912 -38.58103 -36.00198 -34.91975 -33.98429 -33.26607 -32.64810 -30.33227 -29.56615 -28.63348 -27.76163 -26.85757 -25.73831 -24.52197 -23.02332 -22.41146 -22.16337 -21.67716 -20.85666 -20.05343 -19.54368 -18.31003 -18.16070 -17.24505 -17.00662 -16.84237 -16.55499 -16.29111 -15.85236 -15.68461 -15.34269 -15.13851 -15.00874 -14.69573 -14.53218 -14.37967 -14.13451 -13.99828 -13.83719 -13.74328 -13.65287 -13.33716 -13.20045 -13.05414 -12.92310 -12.76984 -12.63931 -12.48328 -12.41027 -12.25943 -12.12159 -11.83159 -11.77571 -11.73958 -11.12405 -10.89469 -10.88615 -10.44727 -9.73823 -9.44978 -9.44705 -9.20582 -8.00310 -5.35769 1.07630 1.35361 1.40119 1.46905 1.52326 1.79825 2.00527 2.23492 2.48462 3.02195 3.21475 3.28050 3.43325 3.48342 3.58969 3.62330 3.84414 3.86826 3.94984 3.98740 4.11097 4.20562 4.25525 4.29202 4.34922 4.39650 4.45033 4.46623 4.50089 4.54030 4.60187 4.64572 4.68283 4.75569 4.79232 4.89370 4.90666 4.94847 4.98246 5.02094 5.09952 5.19961 5.27463 5.43713 5.78018 5.78959 5.82861 6.02394 6.21616 6.35732 6.42429 7.04119 7.07311 7.15785 7.78800 7.97520 9.20504 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008161 B = 0.004049 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.214984 B = 6913.039942 C = 9091.687086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.540 5.540 3 C 0.037 3.963 4 C -0.105 4.105 5 C -0.115 4.115 6 H 0.116 0.884 7 C 0.539 3.461 8 O -0.575 6.575 9 N -0.610 5.610 10 C 0.129 3.871 11 C -0.021 4.021 12 H 0.098 0.902 13 C -0.006 4.006 14 C -0.038 4.038 15 N -0.536 5.536 16 C 0.182 3.818 17 N -0.458 5.458 18 C 0.062 3.938 19 C 0.186 3.814 20 H 0.071 0.929 21 N -0.732 5.732 22 C -0.224 4.224 23 H 0.064 0.936 24 C -0.055 4.055 25 N -0.980 5.980 26 Si 0.945 3.055 27 H -0.287 1.287 28 H -0.246 1.246 29 H -0.300 1.300 30 C 0.086 3.914 31 C 0.049 3.951 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.158 0.842 42 H 0.241 0.759 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.366 0.634 47 H 0.256 0.744 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.557 9.887 10.626 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.265 5.265 3 C -0.090 4.090 4 C -0.143 4.143 5 C -0.137 4.137 6 H 0.134 0.866 7 C 0.329 3.671 8 O -0.455 6.455 9 N -0.343 5.343 10 C 0.005 3.995 11 C -0.042 4.042 12 H 0.116 0.884 13 C -0.122 4.122 14 C -0.186 4.186 15 N -0.254 5.254 16 C -0.100 4.100 17 N -0.141 5.141 18 C -0.079 4.079 19 C 0.075 3.925 20 H 0.088 0.912 21 N -0.374 5.374 22 C -0.355 4.355 23 H 0.082 0.918 24 C -0.247 4.247 25 N -0.630 5.630 26 Si 0.773 3.227 27 H -0.214 1.214 28 H -0.170 1.170 29 H -0.227 1.227 30 C -0.040 4.040 31 C -0.080 4.080 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.175 0.825 42 H 0.257 0.743 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.102 0.898 46 H 0.200 0.800 47 H 0.065 0.935 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.924 8.958 11.673 18.939 hybrid contribution -0.072 1.039 -2.142 2.382 sum 11.852 9.997 9.531 18.200 Atomic orbital electron populations 1.22566 0.86478 1.02457 1.01836 1.64763 1.09482 1.16055 1.36190 1.23323 0.94119 0.89321 1.02244 1.22441 0.97295 0.97249 0.97342 1.22199 0.92527 0.95912 1.03042 0.86560 1.20453 0.87806 0.80365 0.78452 1.90646 1.40391 1.74663 1.39781 1.48455 1.22678 1.24911 1.38266 1.22095 0.91459 0.90609 0.95300 1.20808 0.95826 0.90247 0.97293 0.88357 1.20637 0.88390 0.96563 1.06595 1.22038 1.00682 0.88578 1.07281 1.70205 1.03394 1.32471 1.19363 1.25603 1.00220 0.81729 1.02436 1.45457 1.14071 1.09350 1.45182 1.22379 0.90966 0.94374 1.00181 1.21265 0.91533 0.95436 0.84228 0.91151 1.42535 1.15029 1.77110 1.02763 1.18957 0.91232 1.33238 0.92097 0.91771 1.25372 0.98351 1.02308 0.98676 1.69869 1.23377 1.55200 1.14543 0.85567 0.79293 0.78611 0.79207 1.21408 1.17008 1.22656 1.23023 0.91174 0.99195 0.90605 1.22813 0.94204 0.98887 0.92066 0.91492 0.89896 0.94595 0.92154 0.88714 0.90931 0.88883 0.89993 0.91108 0.82485 0.74258 0.88597 0.86876 0.89762 0.79981 0.93475 0.90677 0.90831 0.91899 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.40 127.69 1.20 1.47 16 2 N -0.54 -11.79 5.55 -909.14 -5.05 -16.84 16 3 C 0.04 0.66 6.56 86.65 0.57 1.23 16 4 C -0.10 -2.16 6.39 31.80 0.20 -1.95 16 5 C -0.12 -2.64 2.88 -10.66 -0.03 -2.67 16 6 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 7 C 0.54 15.35 7.02 87.66 0.62 15.97 16 8 O -0.57 -19.67 15.70 -3.04 -0.05 -19.72 16 9 N -0.61 -16.61 3.27 -811.79 -2.65 -19.26 16 10 C 0.13 3.34 6.36 86.86 0.55 3.89 16 11 C -0.02 -0.55 2.94 -10.15 -0.03 -0.58 16 12 H 0.10 2.44 6.97 -2.39 -0.02 2.42 16 13 C -0.01 -0.17 5.95 40.96 0.24 0.07 16 14 C -0.04 -1.27 11.02 83.52 0.92 -0.35 16 15 N -0.54 -17.62 11.25 -200.32 -2.25 -19.87 16 16 C 0.18 4.43 12.56 180.26 2.26 6.70 16 17 N -0.46 -10.51 3.15 -537.86 -1.70 -12.21 16 18 C 0.06 0.82 11.00 127.77 1.41 2.23 16 19 C 0.19 6.09 2.97 46.18 0.14 6.23 16 20 H 0.07 2.51 6.59 -2.39 -0.02 2.50 16 21 N -0.73 -29.86 4.98 -317.34 -1.58 -31.44 16 22 C -0.22 -11.60 10.46 84.03 0.88 -10.72 16 23 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 24 C -0.06 -3.04 5.50 84.86 0.47 -2.58 16 25 N -0.98 -59.99 13.97 21.65 0.30 -59.69 16 26 Si 0.95 42.49 27.73 68.60 1.90 44.40 16 27 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 28 H -0.25 -9.57 6.52 99.48 0.65 -8.92 16 29 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 30 C 0.09 2.47 5.74 86.73 0.50 2.97 16 31 C 0.05 1.13 4.95 86.44 0.43 1.56 16 32 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.04 0.60 8.00 -2.39 -0.02 0.58 16 35 H 0.06 0.92 7.96 -2.38 -0.02 0.90 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.84 6.91 -2.39 -0.02 1.82 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 2.05 8.04 -2.39 -0.02 2.03 16 40 H 0.07 1.91 8.03 -2.39 -0.02 1.89 16 41 H 0.16 5.25 7.17 -2.92 -0.02 5.23 16 42 H 0.24 3.48 8.06 -2.91 -0.02 3.45 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 1.16 7.13 -2.38 -0.02 1.14 16 46 H 0.37 14.42 5.58 -92.70 -0.52 13.91 16 47 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 48 H 0.07 2.22 8.03 -2.38 -0.02 2.21 16 49 H 0.07 2.12 6.26 -2.39 -0.01 2.10 16 50 H 0.06 1.39 7.73 -2.39 -0.02 1.38 16 51 H 0.07 1.83 6.53 -2.39 -0.02 1.81 16 Total: -1.00 -74.28 400.41 -0.39 -74.67 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.36 Total: 36.52 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 10.32 Total: 23.45 kcal Atomic # 7 Polarization: -146.38 SS G_CDS: -12.93 Total: -159.31 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.05 Total: -19.72 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.90 Total: 44.40 kcal Total: -74.28 -0.39 -74.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070719152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.445 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds