Wall clock time and date at job start Wed Apr 1 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40438 * 126.82322 * 2 1 4 4 C 1.30718 * 106.79466 * 180.25546 * 3 2 1 5 5 C 1.50696 * 125.53032 * 179.71098 * 4 3 2 6 6 C 1.52993 * 117.50064 * 8.66594 * 5 4 3 7 7 C 1.52995 * 60.00054 * 252.51060 * 6 5 4 8 8 N 1.33245 * 108.94258 * 359.74815 * 4 3 2 9 9 C 1.30826 * 109.82870 * 359.97438 * 8 4 3 10 10 C 1.50701 * 125.96136 * 179.97438 * 9 8 4 11 11 C 1.50699 * 109.47272 * 90.02387 * 10 9 8 12 12 O 1.21284 * 119.99842 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00339 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00148 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47121 * 35.00307 * 14 13 11 16 16 C 1.53007 * 109.46993 * 275.00177 * 14 13 11 17 17 C 1.53002 * 109.46614 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47624 * 59.99880 * 17 16 14 19 19 C 1.52996 * 109.47183 * 300.00076 * 18 17 16 20 20 C 1.53003 * 109.47284 * 59.99869 * 19 18 17 21 21 H 1.08993 * 109.46899 * 60.00059 * 20 19 18 22 22 N 1.46499 * 109.47139 * 180.02562 * 20 19 18 23 23 C 1.36932 * 119.99549 * 274.99850 * 22 20 19 24 24 H 1.08003 * 120.00354 * 0.02562 * 23 22 20 25 25 C 1.38817 * 120.00011 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00154 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99635 * 0.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 269.99668 * 27 25 23 29 29 H 1.48503 * 109.47261 * 149.99848 * 27 25 23 30 30 H 1.48500 * 109.47454 * 29.99841 * 27 25 23 31 31 H 1.09003 * 109.47519 * 270.17563 * 1 2 3 32 32 H 1.08997 * 109.47293 * 30.17541 * 1 2 3 33 33 H 1.09001 * 109.47136 * 150.17386 * 1 2 3 34 34 H 1.09003 * 115.55090 * 154.37070 * 5 4 3 35 35 H 1.09001 * 117.49623 * 359.97438 * 6 5 4 36 36 H 1.08999 * 117.50251 * 145.01416 * 6 5 4 37 37 H 1.09010 * 117.49619 * 252.50833 * 7 6 5 38 38 H 1.09000 * 117.52205 * 107.48489 * 7 6 5 39 39 H 1.09000 * 109.47251 * 330.02648 * 10 9 8 40 40 H 1.08998 * 109.47451 * 210.02731 * 10 9 8 41 41 H 0.97008 * 119.99734 * 0.02562 * 13 11 10 42 42 H 1.08999 * 109.47150 * 60.00307 * 16 14 13 43 43 H 1.09001 * 109.47293 * 300.00024 * 16 14 13 44 44 H 1.08999 * 109.47386 * 299.99437 * 17 16 14 45 45 H 1.09002 * 109.46447 * 180.02562 * 17 16 14 46 46 H 1.08995 * 109.47291 * 179.97438 * 18 17 16 47 47 H 1.09001 * 109.46895 * 59.99879 * 18 17 16 48 48 H 1.09001 * 109.47044 * 299.99712 * 19 18 17 49 49 H 1.09000 * 109.47161 * 180.02562 * 19 18 17 50 50 H 0.96993 * 120.00302 * 94.99814 * 22 20 19 51 51 H 0.96998 * 119.99442 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5348 0.6765 -0.0056 5 6 4.7776 1.5288 -0.0139 6 6 4.6025 3.0352 0.1884 7 6 4.9697 2.4862 -1.1917 8 7 3.5096 -0.6557 -0.0035 9 6 2.2707 -1.0761 0.0039 10 6 1.8246 -2.5156 0.0079 11 6 1.6834 -2.9938 1.4300 12 8 1.9211 -2.2398 2.3498 13 7 1.2920 -4.2590 1.6799 14 6 1.1542 -4.7237 3.0624 15 1 0.7936 -3.9059 3.6863 16 6 2.5141 -5.1980 3.5789 17 6 2.3699 -5.6839 5.0226 18 6 1.3725 -6.8429 5.0735 19 6 0.0127 -6.3686 4.5569 20 6 0.1567 -5.8828 3.1132 21 1 0.5175 -6.7003 2.4891 22 7 -1.1452 -5.4281 2.6188 23 6 -2.0290 -6.3296 2.0886 24 1 -1.7665 -7.3759 2.0354 25 6 -3.2629 -5.8990 1.6206 26 7 -4.1127 -6.7656 1.1115 27 14 -3.7172 -4.0894 1.7134 28 1 -4.3906 -3.8138 3.0080 29 1 -4.6353 -3.7516 0.5962 30 1 -2.4870 -3.2642 1.6099 31 1 -0.3634 0.0032 1.0277 32 1 -0.3634 0.8884 -0.5165 33 1 -0.3633 -0.8915 -0.5111 34 1 5.6690 1.0643 0.4077 35 1 3.5884 3.4098 0.3271 36 1 5.3787 3.5620 0.7433 37 1 5.9876 2.6520 -1.5448 38 1 4.1974 2.4994 -1.9608 39 1 2.5645 -3.1267 -0.5090 40 1 0.8643 -2.5998 -0.5008 41 1 1.1015 -4.8619 0.9442 42 1 3.2248 -4.3724 3.5423 43 1 2.8747 -6.0158 2.9550 44 1 2.0092 -4.8664 5.6468 45 1 3.3388 -6.0213 5.3907 46 1 1.2702 -7.1893 6.1019 47 1 1.7333 -7.6604 4.4493 48 1 -0.3481 -5.5511 5.1811 49 1 -0.6980 -7.1942 4.5936 50 1 -1.3811 -4.4885 2.6670 51 1 -4.9750 -6.4646 0.7848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085428607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:30 Heat of formation + Delta-G solvation = 55.911045 kcal Electronic energy + Delta-G solvation = -31161.580766 eV Core-core repulsion = 27097.451222 eV Total energy + Delta-G solvation = -4064.129544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.29447 -41.13209 -39.30990 -38.17912 -35.92075 -35.18332 -34.94800 -33.73535 -33.30532 -31.03637 -30.19157 -29.20225 -28.17503 -25.32650 -24.78611 -23.85959 -23.29760 -22.49704 -22.09373 -21.37884 -21.01728 -20.67135 -19.66651 -18.32628 -18.10853 -17.42768 -16.90864 -16.70842 -16.45349 -16.30462 -16.01207 -15.67316 -15.17765 -15.02919 -14.88482 -14.70052 -14.58601 -14.45994 -14.39587 -14.25529 -13.75837 -13.64397 -13.23079 -13.13392 -13.05588 -12.93701 -12.74042 -12.41568 -12.39560 -12.16501 -12.01831 -11.90409 -11.81037 -11.74119 -11.49602 -11.48745 -11.23700 -11.09963 -11.07897 -10.91706 -10.71952 -10.22984 -10.02826 -9.28960 -7.98230 -5.30928 0.41974 1.24112 1.35318 1.41403 1.47115 1.53495 1.60748 2.22134 2.49737 2.76700 2.97377 3.31983 3.33763 3.44269 3.47049 3.71994 3.82554 3.86510 3.94504 4.04913 4.11528 4.17399 4.19632 4.20296 4.25229 4.35471 4.41467 4.47568 4.50112 4.57578 4.57972 4.67474 4.73187 4.88370 4.93635 5.00719 5.09743 5.12991 5.21604 5.22468 5.23548 5.27762 5.30328 5.35439 5.45696 5.51996 5.63455 5.70775 5.82609 6.25044 6.52127 7.00543 7.10284 7.18240 7.85862 8.04604 9.22996 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.003091 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.555076 B = 9056.285379 C =11010.311105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.376 5.376 3 N -0.340 5.340 4 C 0.240 3.760 5 C -0.094 4.094 6 C -0.153 4.153 7 C -0.141 4.141 8 N -0.556 5.556 9 C 0.297 3.703 10 C -0.064 4.064 11 C 0.521 3.479 12 O -0.579 6.579 13 N -0.701 5.701 14 C 0.148 3.852 15 H 0.060 0.940 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.111 4.111 19 C -0.130 4.130 20 C 0.177 3.823 21 H 0.064 0.936 22 N -0.746 5.746 23 C -0.215 4.215 24 H 0.064 0.936 25 C -0.058 4.058 26 N -0.982 5.982 27 Si 0.944 3.056 28 H -0.294 1.294 29 H -0.296 1.296 30 H -0.250 1.250 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.416 0.584 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.048 0.952 49 H 0.048 0.952 50 H 0.360 0.640 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.014 11.985 -2.505 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.166 5.166 3 N -0.169 5.169 4 C -0.041 4.041 5 C -0.115 4.115 6 C -0.191 4.191 7 C -0.180 4.180 8 N -0.284 5.284 9 C 0.020 3.980 10 C -0.106 4.106 11 C 0.307 3.693 12 O -0.459 6.459 13 N -0.352 5.352 14 C 0.043 3.957 15 H 0.079 0.921 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.171 4.171 20 C 0.069 3.931 21 H 0.082 0.918 22 N -0.388 5.388 23 C -0.346 4.346 24 H 0.082 0.918 25 C -0.250 4.250 26 N -0.633 5.633 27 Si 0.773 3.227 28 H -0.221 1.221 29 H -0.223 1.223 30 H -0.175 1.175 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.104 0.896 39 H 0.177 0.823 40 H 0.166 0.834 41 H 0.253 0.747 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.193 0.807 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.045 12.852 -1.951 22.239 hybrid contribution -1.614 0.361 -0.099 1.656 sum 16.431 13.212 -2.050 21.184 Atomic orbital electron populations 1.22294 0.72020 1.06890 1.04498 1.50291 1.08851 1.03461 1.54005 1.77828 1.01750 1.08627 1.28737 1.23692 0.93359 0.89484 0.97548 1.20253 0.92548 0.90576 1.08140 1.23081 1.03757 0.92263 0.99993 1.23091 1.04288 0.99666 0.90935 1.70195 1.20431 1.11478 1.26263 1.23748 0.86020 0.92479 0.95774 1.20358 1.07544 0.86949 0.95741 1.20419 0.76202 0.81939 0.90787 1.90732 1.51700 1.55857 1.47651 1.45850 1.67392 1.12378 1.09545 1.21176 0.96040 0.96127 0.82368 0.92135 1.21803 0.95153 1.01000 0.97530 1.21476 1.00089 0.97958 0.95372 1.21509 0.93734 0.98058 1.01579 1.22079 0.97724 1.00336 0.96958 1.20629 0.83776 0.94430 0.94275 0.91798 1.42765 1.15697 1.06038 1.74337 1.18968 0.94909 0.90864 1.29837 0.91811 1.25331 0.96930 1.00892 1.01844 1.69860 1.09340 1.34931 1.49175 0.85578 0.78294 0.82249 0.76569 1.22138 1.22329 1.17467 0.90668 0.87243 0.86484 0.84546 0.89464 0.85471 0.85079 0.89632 0.82331 0.83443 0.74746 0.92608 0.90112 0.92729 0.89808 0.91006 0.91102 0.93329 0.93311 0.80695 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.67 11.33 127.77 1.45 3.12 16 2 N -0.38 -10.41 4.04 -359.88 -1.45 -11.86 16 3 N -0.34 -10.38 12.24 -51.33 -0.63 -11.01 16 4 C 0.24 7.14 7.69 138.63 1.07 8.21 16 5 C -0.09 -2.05 6.33 -11.54 -0.07 -2.12 16 6 C -0.15 -2.59 10.13 30.59 0.31 -2.28 16 7 C -0.14 -2.23 10.23 30.59 0.31 -1.91 16 8 N -0.56 -17.41 11.19 -179.73 -2.01 -19.42 16 9 C 0.30 8.29 6.48 138.23 0.90 9.19 16 10 C -0.06 -1.33 6.03 29.10 0.18 -1.16 16 11 C 0.52 14.42 7.79 87.66 0.68 15.10 16 12 O -0.58 -21.22 15.70 -3.04 -0.05 -21.27 16 13 N -0.70 -18.09 4.91 -442.52 -2.17 -20.26 16 14 C 0.15 4.24 1.98 45.00 0.09 4.33 16 15 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 16 C -0.12 -2.76 5.50 30.60 0.17 -2.60 16 17 C -0.11 -2.39 5.92 30.59 0.18 -2.21 16 18 C -0.11 -2.54 5.92 30.59 0.18 -2.35 16 19 C -0.13 -4.02 5.50 30.59 0.17 -3.85 16 20 C 0.18 5.77 2.29 44.99 0.10 5.87 16 21 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 22 N -0.75 -30.70 4.76 -322.93 -1.54 -32.24 16 23 C -0.21 -10.98 10.41 84.04 0.87 -10.10 16 24 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 25 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 26 N -0.98 -59.50 13.97 21.65 0.30 -59.20 16 27 Si 0.94 42.76 27.73 68.60 1.90 44.66 16 28 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 30 H -0.25 -9.96 6.52 99.48 0.65 -9.31 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.12 1.72 7.10 -2.39 -0.02 1.70 16 34 H 0.14 2.66 8.14 -2.39 -0.02 2.65 16 35 H 0.09 1.76 7.88 -2.39 -0.02 1.74 16 36 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.16 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.15 2.16 7.12 -2.39 -0.02 2.14 16 41 H 0.42 9.29 8.60 -92.70 -0.80 8.50 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 45 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.36 15.00 5.66 -92.71 -0.52 14.48 16 51 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -77.22 414.80 0.97 -76.25 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -0.44 Total: 39.84 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 7.05 Total: 14.50 kcal Atomic # 7 Polarization: -146.49 SS G_CDS: -7.50 Total: -153.99 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.05 Total: -21.27 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.90 Total: 44.66 kcal Total: -77.22 0.97 -76.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085428607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.162 kcal (2) G-P(sol) polarization free energy of solvation -77.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds