Wall clock time and date at job start Wed Apr 1 2020 05:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00097 * 2 1 4 4 C 1.53005 * 109.46991 * 264.91741 * 3 2 1 5 5 H 1.09002 * 112.73714 * 311.99544 * 4 3 2 6 6 C 1.53489 * 113.46963 * 82.82197 * 4 3 2 7 7 C 1.53495 * 83.34710 * 140.84533 * 6 4 3 8 8 N 1.47067 * 113.46665 * 181.26005 * 4 3 2 9 9 C 1.36938 * 136.06030 * 38.05979 * 8 4 3 10 10 H 1.08003 * 119.99814 * 4.76974 * 9 8 4 11 11 C 1.38809 * 120.00192 * 184.77594 * 9 8 4 12 12 N 1.31617 * 120.00096 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00124 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47236 * 59.99444 * 13 11 9 15 15 H 1.48502 * 109.47249 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46848 * 299.99727 * 13 11 9 17 17 C 1.34779 * 119.99922 * 180.02562 * 2 1 3 18 18 O 1.21574 * 120.00008 * 183.31905 * 17 2 1 19 19 C 1.47711 * 120.00114 * 3.32560 * 17 2 1 20 20 C 1.41498 * 126.51721 * 183.68407 * 19 17 2 21 21 C 1.35366 * 105.50195 * 179.97438 * 20 19 17 22 22 C 1.50694 * 126.38650 * 179.73657 * 21 20 19 23 23 H 1.09002 * 109.87939 * 356.18581 * 22 21 20 24 24 C 1.54319 * 109.88936 * 235.15506 * 22 21 20 25 25 C 1.55402 * 102.89997 * 218.40580 * 24 22 21 26 26 C 1.54907 * 101.74003 * 35.48112 * 25 24 22 27 27 N 1.47439 * 109.89043 * 117.21622 * 22 21 20 28 28 C 1.46905 * 111.00134 * 356.15162 * 27 22 21 29 29 N 1.35033 * 107.22904 * 0.02562 * 21 20 19 30 30 H 0.97003 * 124.88986 * 179.97438 * 29 21 20 31 31 N 1.28472 * 110.23340 * 359.97438 * 29 21 20 32 32 H 1.09000 * 109.46920 * 263.92143 * 1 2 3 33 33 H 1.08999 * 109.47255 * 23.91687 * 1 2 3 34 34 H 1.09000 * 109.46946 * 143.91769 * 1 2 3 35 35 H 1.08997 * 109.47143 * 24.91319 * 3 2 1 36 36 H 1.09000 * 109.47493 * 144.91745 * 3 2 1 37 37 H 1.08998 * 114.20913 * 254.43256 * 6 4 3 38 38 H 1.09000 * 114.20629 * 27.26146 * 6 4 3 39 39 H 1.08997 * 113.47005 * 219.15331 * 7 6 4 40 40 H 1.09000 * 113.52086 * 88.71607 * 7 6 4 41 41 H 0.97002 * 120.00198 * 180.02562 * 12 11 9 42 42 H 1.08005 * 127.24999 * 359.97438 * 20 19 17 43 43 H 1.08994 * 110.70939 * 336.68893 * 24 22 21 44 44 H 1.09004 * 110.70704 * 99.93060 * 24 22 21 45 45 H 1.09001 * 110.87614 * 277.39717 * 25 24 22 46 46 H 1.08997 * 111.02479 * 153.63593 * 25 24 22 47 47 H 1.09001 * 110.37573 * 204.18896 * 26 25 24 48 48 H 1.09003 * 110.37488 * 81.84746 * 26 25 24 49 49 H 1.08997 * 109.46943 * 67.46363 * 28 27 22 50 50 H 1.08996 * 109.47564 * 187.46512 * 28 27 22 51 51 H 1.09004 * 109.46443 * 307.46614 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5632 1.6465 -1.4369 5 1 3.0085 0.8192 -1.9896 6 6 1.4259 2.3469 -2.1931 7 6 2.5681 3.2036 -2.7565 8 7 3.3301 2.8974 -1.5365 9 6 4.3181 3.5086 -0.8117 10 1 4.7590 3.0024 0.0344 11 6 4.7529 4.7789 -1.1642 12 7 4.2158 5.3956 -2.1954 13 14 6.1012 5.6124 -0.1759 14 1 7.3335 4.7852 -0.2238 15 1 6.3819 6.9517 -0.7526 16 1 5.6604 5.7626 1.2343 17 6 2.1389 -1.1672 -0.0005 18 8 3.3531 -1.1682 0.0604 19 6 1.4022 -2.4453 -0.0753 20 6 1.9606 -3.7440 -0.0123 21 6 0.9127 -4.5940 -0.1208 22 6 0.9785 -6.0995 -0.1150 23 1 2.0181 -6.4249 -0.0767 24 6 0.2995 -6.6596 -1.3825 25 6 -0.4317 -7.9249 -0.8541 26 6 -0.8710 -7.4679 0.5593 27 7 0.2439 -6.6292 1.0485 28 6 -0.2515 -5.5389 1.8993 29 7 -0.2020 -3.8414 -0.2417 30 1 -1.1011 -4.1928 -0.3363 31 7 0.0996 -2.5929 -0.2132 32 1 -0.3633 -0.1088 1.0219 33 1 -0.3634 0.9394 -0.4166 34 1 -0.3633 -0.8305 -0.6052 35 1 1.5720 2.0494 0.4329 36 1 3.1075 1.1629 0.5906 37 1 0.9296 1.7204 -2.9342 38 1 0.7325 2.8919 -1.5526 39 1 2.3118 4.2584 -2.8550 40 1 3.0147 2.7922 -3.6618 41 1 4.5199 6.2831 -2.4420 42 1 3.0033 -4.0026 0.0989 43 1 -0.4153 -5.9423 -1.7858 44 1 1.0440 -6.9267 -2.1326 45 1 0.2515 -8.7723 -0.7956 46 1 -1.2961 -8.1643 -1.4734 47 1 -1.0110 -8.3306 1.2107 48 1 -1.7888 -6.8827 0.5007 49 1 -1.0219 -4.9827 1.3652 50 1 -0.6724 -5.9548 2.8146 51 1 0.5722 -4.8702 2.1492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085608194.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:23 Heat of formation + Delta-G solvation = 110.286738 kcal Electronic energy + Delta-G solvation = -31024.401496 eV Core-core repulsion = 26962.629859 eV Total energy + Delta-G solvation = -4061.771637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.03719 -40.97388 -39.95105 -39.51957 -36.54330 -34.29250 -33.30510 -32.94497 -32.83776 -30.09103 -29.90967 -28.76078 -27.58047 -26.65681 -25.45232 -25.18501 -23.43039 -22.82264 -22.14581 -21.80608 -21.07268 -19.90350 -18.86217 -18.63807 -17.77294 -17.39617 -17.31786 -16.84238 -16.69513 -16.29736 -16.10350 -15.86556 -15.27843 -15.09637 -14.95578 -14.72172 -14.56728 -14.24942 -14.17317 -13.97161 -13.76411 -13.56643 -13.49170 -13.30195 -12.95314 -12.68990 -12.62782 -12.56503 -12.47631 -12.28314 -12.23402 -12.04316 -11.81732 -11.75161 -11.66419 -11.56212 -11.35782 -11.07992 -10.83936 -10.47073 -10.19915 -9.60997 -9.36830 -8.92003 -7.89851 -5.24927 0.43281 0.95447 1.43360 1.47694 1.53525 1.66899 2.04929 2.29347 2.48120 2.99293 3.16936 3.29222 3.40345 3.47878 3.57894 3.74614 3.79068 3.96312 4.11703 4.20938 4.29512 4.30615 4.35842 4.40246 4.43237 4.48037 4.52513 4.55829 4.62434 4.68876 4.81970 4.90068 4.90820 4.92878 4.96824 4.97679 5.04272 5.05565 5.05849 5.15478 5.21590 5.26121 5.29458 5.47454 5.54519 5.72518 5.84941 5.90633 5.95298 6.01511 6.35692 6.74441 6.91542 7.10274 7.59570 8.60765 9.26328 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.002070 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.335066 B =13523.723738 C =13811.928847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.593 5.593 3 C 0.132 3.868 4 C 0.135 3.865 5 H 0.023 0.977 6 C -0.127 4.127 7 C 0.140 3.860 8 N -0.630 5.630 9 C -0.226 4.226 10 H 0.075 0.925 11 C -0.065 4.065 12 N -0.950 5.950 13 Si 0.978 3.022 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.272 1.272 17 C 0.586 3.414 18 O -0.579 6.579 19 C -0.022 4.022 20 C -0.186 4.186 21 C 0.029 3.971 22 C 0.140 3.860 23 H 0.113 0.887 24 C -0.136 4.136 25 C -0.123 4.123 26 C 0.032 3.968 27 N -0.532 5.532 28 C 0.019 3.981 29 N -0.362 5.362 30 H 0.456 0.544 31 N -0.243 5.243 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.009 0.991 41 H 0.249 0.751 42 H 0.156 0.844 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.033 0.967 50 H 0.079 0.921 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.406 -29.489 4.070 35.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.324 5.324 3 C 0.008 3.992 4 C 0.028 3.972 5 H 0.041 0.959 6 C -0.165 4.165 7 C 0.014 3.986 8 N -0.356 5.356 9 C -0.354 4.354 10 H 0.093 0.907 11 C -0.258 4.258 12 N -0.599 5.599 13 Si 0.806 3.194 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.198 1.198 17 C 0.373 3.627 18 O -0.457 6.457 19 C -0.181 4.181 20 C -0.215 4.215 21 C -0.098 4.098 22 C 0.031 3.969 23 H 0.130 0.870 24 C -0.175 4.175 25 C -0.161 4.161 26 C -0.095 4.095 27 N -0.256 5.256 28 C -0.130 4.130 29 N -0.080 5.080 30 H 0.304 0.696 31 N -0.080 5.080 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.058 0.942 42 H 0.174 0.826 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.051 0.949 50 H 0.097 0.903 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.177 -28.872 4.424 34.942 hybrid contribution 1.235 0.893 -0.146 1.531 sum -17.942 -27.980 4.278 33.512 Atomic orbital electron populations 1.22413 0.76342 1.05194 1.03267 1.47751 1.08894 1.04546 1.71214 1.21514 0.96345 0.84157 0.97165 1.22446 0.91044 0.89040 0.94694 0.95902 1.23473 0.95222 0.98125 0.99635 1.22120 0.89343 0.98715 0.88388 1.46035 1.43146 1.19594 1.26814 1.19176 1.11269 0.97140 1.07863 0.90730 1.25620 1.02771 0.97663 0.99782 1.70001 1.45973 1.14359 1.29563 0.85161 0.78769 0.77195 0.78271 1.20960 1.21530 1.19812 1.17500 0.85926 0.82966 0.76270 1.90791 1.15068 1.87376 1.52469 1.21571 0.90632 0.94290 1.11621 1.21620 1.00819 0.90068 1.08972 1.21725 0.86290 0.96145 1.05660 1.21326 1.01711 0.82708 0.91177 0.86964 1.22952 1.00341 0.97923 0.96260 1.22767 1.01091 0.97236 0.94968 1.23288 0.92044 0.97610 0.96508 1.63879 1.24873 1.19937 1.16864 1.22682 0.98902 0.93366 0.98025 1.43723 1.10246 1.02639 1.51347 0.69569 1.73615 1.15022 1.00269 1.19133 0.91864 0.89752 0.87447 0.88690 0.93475 0.89389 0.88778 0.93154 0.97316 0.94184 0.82623 0.91072 0.89095 0.90004 0.88778 0.89168 0.92426 0.94859 0.90269 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.60 9.75 127.77 1.25 2.84 16 2 N -0.59 -19.41 2.88 -850.34 -2.45 -21.86 16 3 C 0.13 5.22 5.27 86.38 0.46 5.68 16 4 C 0.14 6.02 4.28 41.79 0.18 6.20 16 5 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 6 C -0.13 -4.80 7.96 30.92 0.25 -4.55 16 7 C 0.14 7.03 7.51 83.18 0.62 7.65 16 8 N -0.63 -34.67 3.65 -713.92 -2.60 -37.27 16 9 C -0.23 -13.56 10.55 84.03 0.89 -12.67 16 10 H 0.07 4.40 7.83 -2.91 -0.02 4.38 16 11 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 12 N -0.95 -59.38 11.43 21.65 0.25 -59.13 16 13 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 14 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 15 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 17 C 0.59 21.14 7.65 86.75 0.66 21.80 16 18 O -0.58 -26.18 16.57 -3.95 -0.07 -26.24 16 19 C -0.02 -0.61 6.86 42.46 0.29 -0.32 16 20 C -0.19 -4.42 10.71 22.41 0.24 -4.18 16 21 C 0.03 0.46 3.64 41.40 0.15 0.61 16 22 C 0.14 1.56 3.89 44.51 0.17 1.74 16 23 H 0.11 1.37 8.12 -2.39 -0.02 1.35 16 24 C -0.14 -0.93 6.48 31.87 0.21 -0.72 16 25 C -0.12 -0.53 7.08 32.07 0.23 -0.30 16 26 C 0.03 0.19 6.73 86.77 0.58 0.78 16 27 N -0.53 -5.72 5.44 -890.91 -4.85 -10.57 16 28 C 0.02 0.22 8.31 127.69 1.06 1.28 16 29 N -0.36 -4.96 5.14 -47.93 -0.25 -5.21 16 30 H 0.46 3.13 7.88 -219.99 -1.73 1.39 16 31 N -0.24 -4.99 8.67 -48.18 -0.42 -5.41 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.73 7.97 -2.39 -0.02 1.71 16 34 H 0.11 2.27 5.11 -2.39 -0.01 2.26 16 35 H 0.09 3.46 7.84 -2.39 -0.02 3.45 16 36 H 0.05 2.17 7.53 -2.39 -0.02 2.15 16 37 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 38 H 0.09 3.27 7.99 -2.39 -0.02 3.25 16 39 H 0.05 2.77 6.93 -2.39 -0.02 2.76 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 43 H 0.07 0.44 7.56 -2.39 -0.02 0.42 16 44 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.06 0.23 7.67 -2.39 -0.02 0.21 16 49 H 0.03 0.29 5.46 -2.39 -0.01 0.28 16 50 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.05 0.89 7.10 -2.38 -0.02 0.87 16 Total: -1.00 -79.65 401.48 -1.45 -81.11 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -0.79 Total: 12.07 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 7.70 Total: 22.38 kcal Atomic # 7 Polarization: -129.12 SS G_CDS: -10.32 Total: -139.44 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.07 Total: -26.24 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -79.65 -1.45 -81.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085608194.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.393 kcal (2) G-P(sol) polarization free energy of solvation -79.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds