Wall clock time and date at job start Wed Apr 1 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00263 * 2 1 4 4 C 1.52996 * 109.47129 * 271.37348 * 3 2 1 5 5 H 1.08997 * 112.73745 * 316.52654 * 4 3 2 6 6 C 1.53500 * 113.46661 * 87.34416 * 4 3 2 7 7 C 1.53494 * 83.34300 * 140.84741 * 6 4 3 8 8 N 1.47064 * 87.99067 * 333.93471 * 7 6 4 9 9 C 1.36937 * 136.05800 * 207.16196 * 8 7 6 10 10 H 1.08006 * 119.99664 * 183.88042 * 9 8 7 11 11 C 1.38809 * 120.00292 * 3.87223 * 9 8 7 12 12 N 1.31616 * 119.99844 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00063 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46866 * 90.00368 * 13 11 9 15 15 H 1.48494 * 109.47326 * 210.00287 * 13 11 9 16 16 H 1.48496 * 109.47089 * 330.00612 * 13 11 9 17 17 C 1.34773 * 119.99497 * 179.97438 * 2 1 3 18 18 O 1.21575 * 119.99834 * 175.38545 * 17 2 1 19 19 C 1.47715 * 120.00360 * 355.10989 * 17 2 1 20 20 C 1.41498 * 126.51779 * 174.55844 * 19 17 2 21 21 C 1.35365 * 105.50235 * 179.97438 * 20 19 17 22 22 C 1.50695 * 126.38749 * 179.97438 * 21 20 19 23 23 H 1.08997 * 110.33602 * 355.80058 * 22 21 20 24 24 C 1.54915 * 110.37462 * 118.17270 * 22 21 20 25 25 C 1.55139 * 101.65133 * 155.89886 * 24 22 21 26 26 C 1.54311 * 103.02480 * 324.34721 * 25 24 22 27 27 N 1.47445 * 107.23159 * 22.28250 * 26 25 24 28 28 C 1.46904 * 111.00216 * 123.25893 * 27 26 25 29 29 N 1.35040 * 107.22670 * 0.02562 * 21 20 19 30 30 H 0.97003 * 124.88086 * 179.97438 * 29 21 20 31 31 N 1.28459 * 110.23034 * 359.76393 * 29 21 20 32 32 H 1.08995 * 109.47337 * 263.66351 * 1 2 3 33 33 H 1.09003 * 109.46911 * 23.65689 * 1 2 3 34 34 H 1.08996 * 109.47338 * 143.65290 * 1 2 3 35 35 H 1.09003 * 109.47051 * 31.37718 * 3 2 1 36 36 H 1.09008 * 109.47278 * 151.37207 * 3 2 1 37 37 H 1.09000 * 114.20441 * 254.43343 * 6 4 3 38 38 H 1.08995 * 114.20529 * 27.26023 * 6 4 3 39 39 H 1.08999 * 113.47245 * 219.14921 * 7 6 4 40 40 H 1.09007 * 113.52246 * 88.71967 * 7 6 4 41 41 H 0.96996 * 119.99845 * 179.97438 * 12 11 9 42 42 H 1.07999 * 127.25552 * 359.97438 * 20 19 17 43 43 H 1.09000 * 110.99170 * 273.99348 * 24 22 21 44 44 H 1.09004 * 110.98944 * 37.80981 * 24 22 21 45 45 H 1.08997 * 110.70407 * 205.96158 * 25 24 22 46 46 H 1.09000 * 110.70464 * 82.73184 * 25 24 22 47 47 H 1.08999 * 109.89136 * 262.88160 * 26 25 24 48 48 H 1.08997 * 109.89033 * 141.68809 * 26 25 24 49 49 H 1.09005 * 109.46878 * 299.16072 * 28 27 26 50 50 H 1.08997 * 109.46666 * 59.15476 * 28 27 26 51 51 H 1.08999 * 109.47413 * 179.15692 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4226 1.7276 -1.4420 5 1 2.7344 0.9155 -2.0988 6 6 1.2636 2.5610 -2.0062 7 6 2.3965 3.3759 -2.6455 8 7 3.2685 2.9258 -1.5501 9 6 4.3788 3.4099 -0.9113 10 1 4.8659 2.8170 -0.1512 11 6 4.8783 4.6624 -1.2407 12 7 4.2844 5.3850 -2.1666 13 14 6.3924 5.3230 -0.3686 14 1 7.6102 4.9156 -1.1144 15 1 6.3218 6.8050 -0.3081 16 1 6.4491 4.7734 1.0097 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1690 -0.0842 19 6 1.4042 -2.4441 0.1101 20 6 1.9561 -3.7437 0.0172 21 6 0.9135 -4.5919 0.1779 22 6 0.9750 -6.0975 0.1608 23 1 1.9847 -6.4327 -0.0762 24 6 0.5203 -6.6714 1.5260 25 6 0.0544 -8.0964 1.1273 26 6 -0.5690 -7.8809 -0.2677 27 7 0.0092 -6.6411 -0.8177 28 6 0.6563 -6.8912 -2.1127 29 7 -0.1923 -3.8373 0.3552 30 1 -1.0863 -4.1872 0.4942 31 7 0.1107 -2.5895 0.3177 32 1 -0.3634 -0.1134 1.0213 33 1 -0.3633 0.9413 -0.4124 34 1 -0.3634 -0.8277 -0.6090 35 1 1.6194 2.0220 0.5351 36 1 3.1604 1.1322 0.4924 37 1 0.6372 2.0286 -2.7219 38 1 0.6941 3.1031 -1.2513 39 1 2.2140 4.4505 -2.6415 40 1 2.7014 3.0041 -3.6237 41 1 4.6332 6.2604 -2.3965 42 1 2.9912 -4.0042 -0.1473 43 1 1.3529 -6.7149 2.2281 44 1 -0.3058 -6.0914 1.9377 45 1 -0.6916 -8.4685 1.8295 46 1 0.9036 -8.7772 1.0689 47 1 -1.6505 -7.7780 -0.1787 48 1 -0.3265 -8.7227 -0.9163 49 1 1.4642 -7.6112 -1.9821 50 1 -0.0765 -7.2907 -2.8138 51 1 1.0611 -5.9575 -2.5029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085608195.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:29 Heat of formation + Delta-G solvation = 120.924128 kcal Electronic energy + Delta-G solvation = -30665.876404 eV Core-core repulsion = 26604.566039 eV Total energy + Delta-G solvation = -4061.310365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.82326 -39.59372 -39.22145 -37.78678 -35.05508 -32.68799 -32.22917 -32.02818 -31.84538 -28.73522 -27.94248 -27.80780 -26.29681 -26.09334 -23.81769 -23.33030 -22.45852 -21.64015 -21.44015 -21.03700 -19.15457 -18.58013 -17.94160 -16.80662 -16.71028 -16.49056 -15.87338 -15.77270 -15.45756 -14.89191 -14.53900 -14.47878 -14.25072 -13.97147 -13.81622 -13.62762 -13.39723 -13.22974 -13.17800 -12.66287 -12.55711 -12.35164 -12.18587 -12.03985 -11.84566 -11.70598 -11.69263 -11.40851 -11.32865 -11.02176 -10.79694 -10.69432 -10.63473 -10.34023 -9.84016 -9.68992 -9.68670 -9.42052 -9.33077 -9.11554 -8.99325 -8.67336 -8.12197 -6.75494 -5.64588 -2.97271 1.60795 1.97403 2.74554 3.28328 3.44113 3.48083 3.52940 3.54951 3.62389 3.99074 4.07055 4.35758 4.39092 4.52796 4.57270 4.70916 4.82801 4.90470 4.98572 5.09300 5.16062 5.26738 5.31283 5.33691 5.40915 5.46758 5.49421 5.51549 5.56470 5.60443 5.69324 5.70819 5.76958 5.94156 6.04557 6.12284 6.24626 6.31204 6.34959 6.42971 6.44498 6.58612 6.69296 6.80780 6.88745 7.01646 7.35567 7.55322 7.68527 7.70077 7.84518 8.11193 8.49748 9.16406 9.82548 10.76960 11.52353 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.002026 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.884666 B =13813.719531 C =14158.401563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.597 5.597 3 C 0.117 3.883 4 C 0.135 3.865 5 H 0.045 0.955 6 C -0.167 4.167 7 C 0.149 3.851 8 N -0.601 5.601 9 C -0.211 4.211 10 H 0.080 0.920 11 C -0.010 4.010 12 N -0.922 5.922 13 Si 0.911 3.089 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.592 3.408 18 O -0.529 6.529 19 C -0.002 4.002 20 C -0.175 4.175 21 C 0.033 3.967 22 C 0.138 3.862 23 H 0.085 0.915 24 C -0.123 4.123 25 C -0.143 4.143 26 C 0.040 3.960 27 N -0.535 5.535 28 C 0.020 3.980 29 N -0.369 5.369 30 H 0.444 0.556 31 N -0.253 5.253 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.021 0.979 41 H 0.252 0.748 42 H 0.159 0.841 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.031 0.969 50 H 0.071 0.929 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 -28.861 5.487 33.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.329 5.329 3 C -0.006 4.006 4 C 0.027 3.973 5 H 0.062 0.938 6 C -0.205 4.205 7 C 0.024 3.976 8 N -0.327 5.327 9 C -0.338 4.338 10 H 0.098 0.902 11 C -0.206 4.206 12 N -0.569 5.569 13 Si 0.742 3.258 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.378 3.622 18 O -0.403 6.403 19 C -0.162 4.162 20 C -0.204 4.204 21 C -0.094 4.094 22 C 0.028 3.972 23 H 0.103 0.897 24 C -0.162 4.162 25 C -0.181 4.181 26 C -0.087 4.087 27 N -0.259 5.259 28 C -0.129 4.129 29 N -0.082 5.082 30 H 0.288 0.712 31 N -0.089 5.089 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.177 0.823 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.078 0.922 49 H 0.050 0.950 50 H 0.089 0.911 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.748 -27.578 5.571 32.242 hybrid contribution 1.716 -0.903 0.248 1.955 sum -14.032 -28.480 5.819 32.278 Atomic orbital electron populations 1.21905 0.79052 1.02915 1.01852 1.47732 1.07397 1.05927 1.71873 1.21924 0.97182 0.82263 0.99260 1.22426 0.90189 0.91259 0.93452 0.93798 1.23734 0.96454 0.99858 1.00489 1.22069 0.85847 0.99480 0.90232 1.45663 1.31273 1.18584 1.37152 1.18950 1.01706 0.98462 1.14682 0.90176 1.24775 0.99629 0.96903 0.99338 1.69832 1.41404 1.12020 1.33658 0.86119 0.82681 0.77937 0.79086 1.21702 1.21745 1.20566 1.16998 0.86226 0.81733 0.77272 1.90827 1.12943 1.86443 1.50101 1.21967 0.90010 0.95242 1.08988 1.21483 1.00056 0.90370 1.08483 1.20914 0.87333 0.93806 1.07334 1.21040 0.96436 0.87276 0.92419 0.89704 1.22778 1.01845 0.95676 0.95854 1.22811 1.01166 0.97021 0.97119 1.22866 1.00211 0.90792 0.94845 1.63382 1.32178 1.27069 1.03292 1.22563 0.98028 1.01497 0.90766 1.43254 1.10374 1.02981 1.51615 0.71211 1.73825 1.16371 0.99446 1.19304 0.92844 0.91072 0.90334 0.90250 0.89882 0.92883 0.90522 0.90661 0.96166 0.93828 0.82330 0.89792 0.90658 0.90243 0.91036 0.90191 0.92210 0.95015 0.91065 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 9.30 59.85 0.56 1.68 16 2 N -0.60 -10.12 2.87 -182.75 -0.53 -10.64 16 3 C 0.12 2.30 5.31 -4.05 -0.02 2.28 16 4 C 0.13 2.99 4.31 -72.40 -0.31 2.68 16 5 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.17 -3.30 7.55 -26.22 -0.20 -3.50 16 7 C 0.15 3.70 7.49 -8.51 -0.06 3.64 16 8 N -0.60 -16.22 3.65 -176.99 -0.65 -16.87 16 9 C -0.21 -6.18 10.55 -15.06 -0.16 -6.33 16 10 H 0.08 2.31 7.83 -52.48 -0.41 1.90 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 12 N -0.92 -28.28 11.44 55.49 0.63 -27.65 16 13 Si 0.91 23.12 29.55 -169.99 -5.02 18.09 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.59 10.73 7.67 -12.39 -0.10 10.64 16 18 O -0.53 -11.55 16.53 5.30 0.09 -11.46 16 19 C 0.00 -0.03 6.76 -82.76 -0.56 -0.59 16 20 C -0.18 -2.18 10.73 -39.37 -0.42 -2.60 16 21 C 0.03 0.31 6.13 -82.21 -0.50 -0.19 16 22 C 0.14 0.91 2.92 -67.33 -0.20 0.72 16 23 H 0.09 0.55 7.76 -51.93 -0.40 0.15 16 24 C -0.12 -0.61 6.48 -24.59 -0.16 -0.77 16 25 C -0.14 -0.53 6.94 -24.91 -0.17 -0.71 16 26 C 0.04 0.18 6.90 -2.84 -0.02 0.16 16 27 N -0.53 -3.33 5.08 -232.98 -1.18 -4.51 16 28 C 0.02 0.12 9.12 60.07 0.55 0.67 16 29 N -0.37 -3.37 6.83 33.50 0.23 -3.14 16 30 H 0.44 2.80 8.96 -190.44 -1.71 1.09 16 31 N -0.25 -3.06 9.00 33.42 0.30 -2.76 16 32 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 34 H 0.08 0.99 5.98 -51.93 -0.31 0.68 16 35 H 0.08 1.48 7.80 -51.93 -0.41 1.07 16 36 H 0.08 1.86 7.45 -51.92 -0.39 1.47 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 39 H 0.08 2.03 6.96 -51.93 -0.36 1.67 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.37 8.05 -51.93 -0.42 -0.04 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.24 7.58 -51.93 -0.39 -0.16 16 49 H 0.03 0.17 8.09 -51.93 -0.42 -0.25 16 50 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 409.68 15.07 6.17 6.17 Total: -1.00 -35.48 409.68 -11.63 -47.11 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -9.81 Total: -1.71 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -1.88 Total: 7.38 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -1.19 Total: -65.58 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.48 -11.63 -47.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085608195.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.034 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds