Wall clock time and date at job start Wed Apr 1 2020 05:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00263 * 2 1 4 4 C 1.52996 * 109.47129 * 271.37348 * 3 2 1 5 5 H 1.08997 * 112.73745 * 316.52654 * 4 3 2 6 6 C 1.53500 * 113.46661 * 87.34416 * 4 3 2 7 7 C 1.53494 * 83.34300 * 140.84741 * 6 4 3 8 8 N 1.47064 * 87.99067 * 333.93471 * 7 6 4 9 9 C 1.36937 * 136.05800 * 207.16196 * 8 7 6 10 10 H 1.08006 * 119.99664 * 183.88042 * 9 8 7 11 11 C 1.38809 * 120.00292 * 3.87223 * 9 8 7 12 12 N 1.31616 * 119.99844 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00063 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46866 * 90.00368 * 13 11 9 15 15 H 1.48494 * 109.47326 * 210.00287 * 13 11 9 16 16 H 1.48496 * 109.47089 * 330.00612 * 13 11 9 17 17 C 1.34773 * 119.99497 * 179.97438 * 2 1 3 18 18 O 1.21575 * 119.99834 * 175.38545 * 17 2 1 19 19 C 1.47715 * 120.00360 * 355.10989 * 17 2 1 20 20 C 1.41498 * 126.51779 * 174.55844 * 19 17 2 21 21 C 1.35365 * 105.50235 * 179.97438 * 20 19 17 22 22 C 1.50695 * 126.38749 * 179.97438 * 21 20 19 23 23 H 1.08997 * 110.33602 * 355.80058 * 22 21 20 24 24 C 1.54915 * 110.37462 * 118.17270 * 22 21 20 25 25 C 1.55139 * 101.65133 * 155.89886 * 24 22 21 26 26 C 1.54311 * 103.02480 * 324.34721 * 25 24 22 27 27 N 1.47445 * 107.23159 * 22.28250 * 26 25 24 28 28 C 1.46904 * 111.00216 * 123.25893 * 27 26 25 29 29 N 1.35040 * 107.22670 * 0.02562 * 21 20 19 30 30 H 0.97003 * 124.88086 * 179.97438 * 29 21 20 31 31 N 1.28459 * 110.23034 * 359.76393 * 29 21 20 32 32 H 1.08995 * 109.47337 * 263.66351 * 1 2 3 33 33 H 1.09003 * 109.46911 * 23.65689 * 1 2 3 34 34 H 1.08996 * 109.47338 * 143.65290 * 1 2 3 35 35 H 1.09003 * 109.47051 * 31.37718 * 3 2 1 36 36 H 1.09008 * 109.47278 * 151.37207 * 3 2 1 37 37 H 1.09000 * 114.20441 * 254.43343 * 6 4 3 38 38 H 1.08995 * 114.20529 * 27.26023 * 6 4 3 39 39 H 1.08999 * 113.47245 * 219.14921 * 7 6 4 40 40 H 1.09007 * 113.52246 * 88.71967 * 7 6 4 41 41 H 0.96996 * 119.99845 * 179.97438 * 12 11 9 42 42 H 1.07999 * 127.25552 * 359.97438 * 20 19 17 43 43 H 1.09000 * 110.99170 * 273.99348 * 24 22 21 44 44 H 1.09004 * 110.98944 * 37.80981 * 24 22 21 45 45 H 1.08997 * 110.70407 * 205.96158 * 25 24 22 46 46 H 1.09000 * 110.70464 * 82.73184 * 25 24 22 47 47 H 1.08999 * 109.89136 * 262.88160 * 26 25 24 48 48 H 1.08997 * 109.89033 * 141.68809 * 26 25 24 49 49 H 1.09005 * 109.46878 * 299.16072 * 28 27 26 50 50 H 1.08997 * 109.46666 * 59.15476 * 28 27 26 51 51 H 1.08999 * 109.47413 * 179.15692 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4226 1.7276 -1.4420 5 1 2.7344 0.9155 -2.0988 6 6 1.2636 2.5610 -2.0062 7 6 2.3965 3.3759 -2.6455 8 7 3.2685 2.9258 -1.5501 9 6 4.3788 3.4099 -0.9113 10 1 4.8659 2.8170 -0.1512 11 6 4.8783 4.6624 -1.2407 12 7 4.2844 5.3850 -2.1666 13 14 6.3924 5.3230 -0.3686 14 1 7.6102 4.9156 -1.1144 15 1 6.3218 6.8050 -0.3081 16 1 6.4491 4.7734 1.0097 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1690 -0.0842 19 6 1.4042 -2.4441 0.1101 20 6 1.9561 -3.7437 0.0172 21 6 0.9135 -4.5919 0.1779 22 6 0.9750 -6.0975 0.1608 23 1 1.9847 -6.4327 -0.0762 24 6 0.5203 -6.6714 1.5260 25 6 0.0544 -8.0964 1.1273 26 6 -0.5690 -7.8809 -0.2677 27 7 0.0092 -6.6411 -0.8177 28 6 0.6563 -6.8912 -2.1127 29 7 -0.1923 -3.8373 0.3552 30 1 -1.0863 -4.1872 0.4942 31 7 0.1107 -2.5895 0.3177 32 1 -0.3634 -0.1134 1.0213 33 1 -0.3633 0.9413 -0.4124 34 1 -0.3634 -0.8277 -0.6090 35 1 1.6194 2.0220 0.5351 36 1 3.1604 1.1322 0.4924 37 1 0.6372 2.0286 -2.7219 38 1 0.6941 3.1031 -1.2513 39 1 2.2140 4.4505 -2.6415 40 1 2.7014 3.0041 -3.6237 41 1 4.6332 6.2604 -2.3965 42 1 2.9912 -4.0042 -0.1473 43 1 1.3529 -6.7149 2.2281 44 1 -0.3058 -6.0914 1.9377 45 1 -0.6916 -8.4685 1.8295 46 1 0.9036 -8.7772 1.0689 47 1 -1.6505 -7.7780 -0.1787 48 1 -0.3265 -8.7227 -0.9163 49 1 1.4642 -7.6112 -1.9821 50 1 -0.0765 -7.2907 -2.8138 51 1 1.0611 -5.9575 -2.5029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085608195.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:27 Heat of formation + Delta-G solvation = 95.980788 kcal Electronic energy + Delta-G solvation = -30666.958029 eV Core-core repulsion = 26604.566039 eV Total energy + Delta-G solvation = -4062.391990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.74496 -40.90174 -39.90445 -39.53622 -36.51559 -34.28169 -33.22367 -32.87890 -32.76107 -30.05238 -29.90191 -28.73462 -27.53965 -26.54450 -25.43534 -25.15897 -23.41837 -22.68036 -22.06641 -21.76372 -21.05631 -19.84644 -18.79070 -18.68530 -17.70685 -17.36453 -17.08165 -17.06646 -16.63108 -16.16050 -15.97056 -15.83513 -15.20641 -14.98788 -14.87190 -14.73974 -14.47972 -14.33292 -14.13949 -13.91006 -13.68917 -13.59883 -13.46435 -13.21798 -12.96077 -12.68203 -12.61513 -12.55832 -12.47463 -12.33797 -12.22886 -12.05624 -11.79405 -11.75946 -11.62391 -11.57657 -11.34104 -11.09148 -10.83691 -10.39877 -9.98363 -9.59983 -9.45065 -8.90871 -7.89275 -5.23768 0.52971 1.04990 1.43536 1.46370 1.55115 1.78811 2.14724 2.33816 2.48705 2.90348 3.29736 3.29914 3.48295 3.56760 3.63987 3.80908 3.92685 4.05391 4.06570 4.22130 4.28691 4.33694 4.42189 4.43959 4.49158 4.52978 4.55775 4.60498 4.70702 4.76878 4.84272 4.85374 4.93886 4.97193 4.99623 5.00680 5.03124 5.05240 5.07665 5.10743 5.24210 5.27723 5.31962 5.48563 5.56091 5.74949 5.86952 5.96218 5.98909 6.12152 6.39606 6.85983 6.92843 7.14058 7.60461 8.61820 9.27259 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.002026 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.884666 B =13813.719531 C =14158.401563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.594 5.594 3 C 0.132 3.868 4 C 0.135 3.865 5 H 0.025 0.975 6 C -0.128 4.128 7 C 0.140 3.860 8 N -0.630 5.630 9 C -0.224 4.224 10 H 0.074 0.926 11 C -0.067 4.067 12 N -0.951 5.951 13 Si 0.978 3.022 14 H -0.290 1.290 15 H -0.288 1.288 16 H -0.269 1.269 17 C 0.586 3.414 18 O -0.581 6.581 19 C -0.029 4.029 20 C -0.198 4.198 21 C 0.058 3.942 22 C 0.137 3.863 23 H 0.086 0.914 24 C -0.121 4.121 25 C -0.135 4.135 26 C 0.040 3.960 27 N -0.542 5.542 28 C 0.020 3.980 29 N -0.348 5.348 30 H 0.459 0.541 31 N -0.246 5.246 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.009 0.991 41 H 0.249 0.751 42 H 0.153 0.847 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.066 0.934 49 H 0.038 0.962 50 H 0.079 0.921 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.875 -31.081 6.611 36.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.326 5.326 3 C 0.008 3.992 4 C 0.027 3.973 5 H 0.042 0.958 6 C -0.166 4.166 7 C 0.015 3.985 8 N -0.357 5.357 9 C -0.352 4.352 10 H 0.092 0.908 11 C -0.259 4.259 12 N -0.600 5.600 13 Si 0.806 3.194 14 H -0.217 1.217 15 H -0.214 1.214 16 H -0.194 1.194 17 C 0.374 3.626 18 O -0.459 6.459 19 C -0.187 4.187 20 C -0.227 4.227 21 C -0.070 4.070 22 C 0.027 3.973 23 H 0.104 0.896 24 C -0.160 4.160 25 C -0.174 4.174 26 C -0.087 4.087 27 N -0.267 5.267 28 C -0.128 4.128 29 N -0.064 5.064 30 H 0.307 0.693 31 N -0.084 5.084 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.027 0.973 41 H 0.058 0.942 42 H 0.171 0.829 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.057 0.943 50 H 0.098 0.902 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.346 -29.835 6.706 35.661 hybrid contribution 2.424 -0.354 -0.142 2.453 sum -15.923 -30.189 6.564 34.756 Atomic orbital electron populations 1.22118 0.76246 1.04039 1.03203 1.47771 1.08917 1.04597 1.71272 1.21540 0.96424 0.83991 0.97278 1.22474 0.90272 0.89767 0.94739 0.95793 1.23513 0.94952 0.97645 1.00442 1.22111 0.87995 0.98644 0.89775 1.46061 1.31300 1.20537 1.37758 1.19208 1.02616 0.98696 1.14668 0.90792 1.25612 1.02696 0.97240 1.00394 1.70009 1.42797 1.12114 1.35041 0.85088 0.78838 0.77136 0.78361 1.21678 1.21374 1.19397 1.17504 0.85898 0.83015 0.76195 1.90785 1.15272 1.87337 1.52524 1.21507 0.91060 0.94211 1.11968 1.21573 1.00846 0.90295 1.09975 1.21160 0.86197 0.94944 1.04676 1.21112 0.96949 0.85278 0.93936 0.89621 1.22792 1.02070 0.96460 0.94650 1.22789 1.01582 0.96148 0.96856 1.22931 1.00460 0.90077 0.95266 1.63338 1.31848 1.28334 1.03172 1.22547 0.98523 1.00794 0.90957 1.43312 1.11184 1.02180 1.49724 0.69257 1.73728 1.14938 1.00750 1.18981 0.91260 0.89630 0.89557 0.88632 0.93335 0.89149 0.88700 0.93259 0.97302 0.94215 0.82880 0.89543 0.90293 0.88895 0.90689 0.89514 0.91569 0.94304 0.90216 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.04 9.30 127.77 1.19 3.23 16 2 N -0.59 -19.94 2.87 -850.36 -2.44 -22.38 16 3 C 0.13 5.25 5.31 86.38 0.46 5.70 16 4 C 0.13 6.03 4.31 41.79 0.18 6.21 16 5 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 6 C -0.13 -4.83 7.55 30.93 0.23 -4.60 16 7 C 0.14 7.07 7.49 83.18 0.62 7.70 16 8 N -0.63 -34.90 3.65 -713.88 -2.61 -37.50 16 9 C -0.22 -13.50 10.55 84.03 0.89 -12.61 16 10 H 0.07 4.42 7.83 -2.91 -0.02 4.40 16 11 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 12 N -0.95 -59.77 11.44 21.65 0.25 -59.52 16 13 Si 0.98 48.49 29.55 68.60 2.03 50.52 16 14 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 15 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 16 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 17 C 0.59 21.79 7.67 86.75 0.67 22.45 16 18 O -0.58 -26.85 16.53 -3.95 -0.07 -26.91 16 19 C -0.03 -0.84 6.76 42.46 0.29 -0.56 16 20 C -0.20 -4.94 10.73 22.41 0.24 -4.70 16 21 C 0.06 1.00 6.13 41.40 0.25 1.25 16 22 C 0.14 1.55 2.92 44.64 0.13 1.68 16 23 H 0.09 0.99 7.76 -2.39 -0.02 0.98 16 24 C -0.12 -0.88 6.48 31.98 0.21 -0.67 16 25 C -0.14 -0.59 6.94 31.77 0.22 -0.37 16 26 C 0.04 0.23 6.90 86.64 0.60 0.83 16 27 N -0.54 -5.48 5.08 -891.00 -4.53 -10.01 16 28 C 0.02 0.21 9.12 127.69 1.17 1.38 16 29 N -0.35 -5.56 6.83 -47.93 -0.33 -5.89 16 30 H 0.46 4.33 8.96 -219.99 -1.97 2.35 16 31 N -0.25 -5.52 9.00 -48.18 -0.43 -5.96 16 32 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 33 H 0.09 1.80 7.56 -2.39 -0.02 1.78 16 34 H 0.09 1.96 5.98 -2.39 -0.01 1.94 16 35 H 0.10 3.47 7.80 -2.39 -0.02 3.45 16 36 H 0.05 2.27 7.45 -2.38 -0.02 2.25 16 37 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.09 3.29 7.93 -2.39 -0.02 3.27 16 39 H 0.05 2.73 6.96 -2.39 -0.02 2.71 16 40 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.53 8.05 -2.38 -0.02 0.51 16 45 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.07 0.33 7.58 -2.39 -0.02 0.31 16 49 H 0.04 0.35 8.09 -2.38 -0.02 0.33 16 50 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -80.52 409.68 -1.36 -81.89 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -1.04 Total: 12.38 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 7.80 Total: 23.38 kcal Atomic # 7 Polarization: -131.16 SS G_CDS: -10.09 Total: -141.25 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.07 Total: -26.91 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -80.52 -1.36 -81.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085608195.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.869 kcal (2) G-P(sol) polarization free energy of solvation -80.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds