Wall clock time and date at job start Wed Apr 1 2020 05:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.29110 * 126.00536 * 2 1 4 4 N 1.29018 * 110.25777 * 180.02562 * 3 2 1 5 5 C 1.32909 * 108.63684 * 0.02562 * 4 3 2 6 6 C 1.34398 * 126.00957 * 180.02562 * 2 1 3 7 7 C 1.50540 * 129.25183 * 359.84330 * 6 2 1 8 8 C 1.53428 * 108.32199 * 196.44800 * 7 6 2 9 9 H 1.09001 * 109.46283 * 70.29357 * 8 7 6 10 10 C 1.50702 * 109.45911 * 190.26174 * 8 7 6 11 11 O 1.21282 * 119.99684 * 0.03233 * 10 8 7 12 12 N 1.34769 * 120.00461 * 180.02562 * 10 8 7 13 13 C 1.46500 * 120.00237 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46998 * 180.02562 * 13 12 10 15 15 H 1.08999 * 110.01469 * 305.05983 * 14 13 12 16 16 C 1.53879 * 110.03313 * 66.45678 * 14 13 12 17 17 C 1.54259 * 106.60034 * 119.28297 * 16 14 13 18 18 C 1.54893 * 104.19602 * 23.60929 * 17 16 14 19 19 H 1.08995 * 110.75718 * 80.36922 * 18 17 16 20 20 N 1.46506 * 110.75670 * 203.55919 * 18 17 16 21 21 C 1.36932 * 119.99965 * 273.54997 * 20 18 17 22 22 H 1.08006 * 120.00036 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00172 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99638 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00016 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47177 * 89.99746 * 25 23 21 27 27 H 1.48506 * 109.46893 * 209.99561 * 25 23 21 28 28 H 1.48497 * 109.47570 * 329.99513 * 25 23 21 29 29 C 1.54268 * 110.02688 * 183.61963 * 14 13 12 30 30 C 1.53112 * 109.54290 * 310.27808 * 8 7 6 31 31 C 1.50595 * 129.16348 * 179.77611 * 5 4 3 32 32 H 1.08999 * 109.47178 * 269.99700 * 1 2 3 33 33 H 1.09002 * 109.47350 * 30.00134 * 1 2 3 34 34 H 1.09007 * 109.47075 * 149.99812 * 1 2 3 35 35 H 1.08998 * 109.68906 * 76.74284 * 7 6 2 36 36 H 1.08996 * 109.72637 * 316.17550 * 7 6 2 37 37 H 0.97010 * 119.99854 * 0.02562 * 12 10 8 38 38 H 1.08993 * 109.47452 * 60.00368 * 13 12 10 39 39 H 1.09000 * 109.47175 * 300.00158 * 13 12 10 40 40 H 1.09000 * 110.02753 * 238.57158 * 16 14 13 41 41 H 1.09000 * 110.03022 * 359.97438 * 16 14 13 42 42 H 1.08998 * 110.48944 * 142.28623 * 17 16 14 43 43 H 1.08999 * 110.48805 * 264.79796 * 17 16 14 44 44 H 0.96996 * 119.99916 * 93.54087 * 20 18 17 45 45 H 0.97001 * 119.99795 * 180.02562 * 24 23 21 46 46 H 1.08996 * 110.49161 * 335.78425 * 29 14 13 47 47 H 1.09006 * 110.48320 * 98.43281 * 29 14 13 48 48 H 1.08997 * 109.45367 * 190.10815 * 30 8 7 49 49 H 1.09000 * 109.45409 * 310.04123 * 30 8 7 50 50 H 1.08996 * 109.69379 * 316.34331 * 31 5 4 51 51 H 1.09012 * 109.68635 * 76.87797 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6943 -0.0005 5 6 3.5328 -0.6331 -0.0015 6 6 2.2552 -1.0872 -0.0005 7 6 1.8722 -2.5430 0.0021 8 6 3.1013 -3.3644 0.4127 9 1 3.3142 -3.1964 1.4684 10 6 2.8267 -4.8282 0.1827 11 8 1.7563 -5.1812 -0.2652 12 7 3.7704 -5.7450 0.4746 13 6 3.5036 -7.1679 0.2504 14 6 4.7286 -7.9874 0.6612 15 1 5.6122 -7.6271 0.1344 16 6 4.9440 -7.8876 2.1815 17 6 4.8349 -9.3225 2.7372 18 6 5.1694 -10.2260 1.5244 19 1 6.2473 -10.2897 1.3758 20 7 4.5912 -11.5611 1.6964 21 6 5.2830 -12.5236 2.3821 22 1 6.2550 -12.2987 2.7957 23 6 4.7354 -13.7888 2.5447 24 7 3.5511 -14.0631 2.0401 25 14 5.6793 -15.1020 3.4794 26 1 5.3253 -15.0352 4.9200 27 1 5.3255 -16.4413 2.9443 28 1 7.1376 -14.8736 3.3169 29 6 4.4960 -9.4795 0.3461 30 6 4.3082 -2.9341 -0.4256 31 6 4.7469 -1.5241 -0.0070 32 1 -0.3633 -0.0001 1.0276 33 1 -0.3634 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5139 35 1 1.5490 -2.8395 -0.9958 36 1 1.0643 -2.7097 0.7145 37 1 4.6265 -5.4626 0.8330 38 1 3.2910 -7.3359 -0.8053 39 1 2.6447 -7.4749 0.8473 40 1 5.9325 -7.4796 2.3925 41 1 4.1761 -7.2550 2.6267 42 1 5.5571 -9.4772 3.5388 43 1 3.8234 -9.5177 3.0934 44 1 3.7184 -11.7632 1.3248 45 1 3.1683 -14.9470 2.1541 46 1 3.4292 -9.7009 0.3140 47 1 4.9711 -9.7488 -0.5974 48 1 5.1297 -3.6321 -0.2642 49 1 4.0354 -2.9329 -1.4809 50 1 5.4793 -1.1425 -0.7182 51 1 5.1849 -1.5540 0.9908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086787617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:26 Heat of formation + Delta-G solvation = 49.411021 kcal Electronic energy + Delta-G solvation = -29899.048650 eV Core-core repulsion = 25834.637243 eV Total energy + Delta-G solvation = -4064.411406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.79255 -40.36424 -38.33924 -36.99841 -35.32731 -35.01848 -33.43083 -31.21935 -31.03810 -30.50741 -29.00976 -28.27706 -27.35257 -25.37217 -24.07878 -23.49585 -23.06226 -21.83581 -20.98632 -20.10591 -19.60775 -19.38800 -17.85706 -17.34243 -17.11830 -16.80247 -16.34257 -15.83256 -15.37568 -15.04709 -14.90074 -14.35368 -14.28597 -14.15752 -14.01386 -13.82035 -13.73830 -13.35873 -13.30207 -12.92032 -12.80813 -12.61731 -12.47807 -12.21410 -11.96453 -11.85760 -11.63271 -11.49032 -11.16578 -10.96811 -10.89718 -10.81642 -10.62145 -10.58754 -10.36237 -10.32053 -10.17932 -10.05638 -9.82080 -9.67215 -9.25715 -9.20086 -8.89069 -6.95957 -5.78128 -3.06728 1.16189 1.90566 2.16343 2.37037 2.89783 3.42117 3.47329 3.49016 3.70343 3.96569 4.14276 4.26045 4.30128 4.41780 4.45690 4.57114 4.65520 4.71367 4.75923 4.84178 4.88303 4.95739 4.97220 5.02163 5.11448 5.35193 5.40387 5.48611 5.50605 5.51451 5.58111 5.64834 5.66513 5.68815 5.84292 5.85266 5.92540 5.98350 6.01332 6.14973 6.17337 6.29153 6.31562 6.42497 6.53823 6.68212 6.84236 7.09153 7.26994 7.69114 7.97520 8.13327 8.40844 9.51728 10.10525 10.44469 11.44528 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031843 B = 0.001595 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.115827 B =17546.800953 C =17953.775566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.283 5.283 3 N -0.098 5.098 4 N -0.261 5.261 5 C -0.022 4.022 6 C -0.016 4.016 7 C -0.025 4.025 8 C -0.102 4.102 9 H 0.106 0.894 10 C 0.518 3.482 11 O -0.540 6.540 12 N -0.723 5.723 13 C 0.126 3.874 14 C -0.100 4.100 15 H 0.074 0.926 16 C -0.120 4.120 17 C -0.144 4.144 18 C 0.177 3.823 19 H 0.052 0.948 20 N -0.721 5.721 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.122 4.122 30 C -0.111 4.111 31 C -0.031 4.031 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.090 0.910 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 28.491 -5.092 29.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.075 5.075 3 N -0.076 5.076 4 N -0.126 5.126 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.065 4.065 8 C -0.124 4.124 9 H 0.124 0.876 10 C 0.303 3.697 11 O -0.417 6.417 12 N -0.374 5.374 13 C 0.003 3.997 14 C -0.120 4.120 15 H 0.092 0.908 16 C -0.159 4.159 17 C -0.184 4.184 18 C 0.066 3.934 19 H 0.070 0.930 20 N -0.361 5.361 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.160 4.160 30 C -0.150 4.150 31 C -0.070 4.070 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.236 0.764 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.108 0.892 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.055 29.675 -5.340 30.306 hybrid contribution 0.233 -1.725 0.727 1.886 sum -2.822 27.950 -4.613 28.469 Atomic orbital electron populations 1.22323 0.72579 1.06153 1.05258 1.46842 1.09270 1.04556 1.46826 1.78600 0.96106 1.11260 1.21600 1.74805 1.09637 1.11922 1.16214 1.21693 0.94969 0.91415 1.08162 1.21819 0.91251 0.92260 1.09677 1.19908 0.97603 0.84590 1.04354 1.21333 0.96501 0.91718 1.02888 0.87595 1.20335 0.84131 0.87539 0.77674 1.90727 1.24504 1.81868 1.44612 1.46060 1.18029 1.07353 1.65991 1.21593 0.98392 0.78390 1.01369 1.21962 0.96680 0.96297 0.97033 0.90762 1.22212 1.00655 0.98755 0.94232 1.23069 1.01722 0.93435 1.00219 1.21155 0.95977 0.85426 0.90820 0.92961 1.42377 1.21410 1.06790 1.65523 1.19246 1.00211 0.90977 1.26625 0.91199 1.24748 0.97054 0.97739 1.01465 1.69660 1.16835 1.21475 1.50134 0.86201 0.79028 0.81529 0.79494 1.21764 1.21788 1.20776 1.22568 1.01755 0.92144 0.99581 1.21680 0.96550 0.96336 1.00410 1.19960 0.92598 0.91074 1.03349 0.88835 0.87842 0.88058 0.88436 0.89389 0.76446 0.91429 0.91079 0.92399 0.92417 0.92618 0.91852 0.78207 0.93513 0.91204 0.91727 0.89754 0.90470 0.89185 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 11.27 59.85 0.67 0.95 16 2 N -0.28 -2.35 3.73 -64.00 -0.24 -2.59 16 3 N -0.10 -1.11 13.19 60.35 0.80 -0.31 16 4 N -0.26 -3.15 12.40 33.16 0.41 -2.73 16 5 C -0.02 -0.21 7.11 -83.12 -0.59 -0.80 16 6 C -0.02 -0.13 6.76 -82.49 -0.56 -0.69 16 7 C -0.02 -0.17 4.68 -27.74 -0.13 -0.30 16 8 C -0.10 -0.64 2.50 -91.49 -0.23 -0.87 16 9 H 0.11 0.54 8.11 -51.93 -0.42 0.12 16 10 C 0.52 4.78 7.15 -10.99 -0.08 4.70 16 11 O -0.54 -7.16 15.82 5.56 0.09 -7.07 16 12 N -0.72 -5.96 5.11 -60.29 -0.31 -6.27 16 13 C 0.13 1.35 4.70 -4.04 -0.02 1.33 16 14 C -0.10 -1.12 2.98 -89.50 -0.27 -1.38 16 15 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.12 -1.42 6.13 -25.61 -0.16 -1.58 16 17 C -0.14 -2.37 6.51 -25.07 -0.16 -2.54 16 18 C 0.18 3.31 3.53 -65.93 -0.23 3.07 16 19 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 20 N -0.72 -17.61 5.26 -51.49 -0.27 -17.88 16 21 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 22 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 25 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C -0.12 -1.81 5.97 -25.07 -0.15 -1.96 16 30 C -0.11 -0.56 5.18 -26.42 -0.14 -0.70 16 31 C -0.03 -0.18 6.30 -27.68 -0.17 -0.36 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.10 0.19 7.96 -51.93 -0.41 -0.23 16 35 H 0.10 0.72 7.78 -51.93 -0.40 0.31 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.40 2.28 7.64 -40.82 -0.31 1.97 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.64 7.58 -51.93 -0.39 0.25 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.38 10.01 7.73 -40.82 -0.32 9.70 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.07 1.11 7.74 -51.93 -0.40 0.70 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.08 0.29 7.30 -51.93 -0.38 -0.09 16 49 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -35.50 407.62 -8.64 -44.14 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.50 Total: 4.93 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.46 Total: -8.29 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 1.11 Total: -56.98 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.50 -8.64 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086787617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.553 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds