Wall clock time and date at job start Wed Apr 1 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.29110 * 126.00536 * 2 1 4 4 N 1.29018 * 110.25777 * 180.02562 * 3 2 1 5 5 C 1.32909 * 108.63684 * 0.02562 * 4 3 2 6 6 C 1.34398 * 126.00957 * 180.02562 * 2 1 3 7 7 C 1.50540 * 129.25183 * 359.84330 * 6 2 1 8 8 C 1.53428 * 108.32199 * 196.44800 * 7 6 2 9 9 H 1.09001 * 109.46283 * 70.29357 * 8 7 6 10 10 C 1.50702 * 109.45911 * 190.26174 * 8 7 6 11 11 O 1.21282 * 119.99684 * 0.03233 * 10 8 7 12 12 N 1.34769 * 120.00461 * 180.02562 * 10 8 7 13 13 C 1.46500 * 120.00237 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46998 * 180.02562 * 13 12 10 15 15 H 1.08999 * 110.01469 * 305.05983 * 14 13 12 16 16 C 1.53879 * 110.03313 * 66.45678 * 14 13 12 17 17 C 1.54259 * 106.60034 * 119.28297 * 16 14 13 18 18 C 1.54893 * 104.19602 * 23.60929 * 17 16 14 19 19 H 1.08995 * 110.75718 * 80.36922 * 18 17 16 20 20 N 1.46506 * 110.75670 * 203.55919 * 18 17 16 21 21 C 1.36932 * 119.99965 * 273.54997 * 20 18 17 22 22 H 1.08006 * 120.00036 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00172 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99638 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00016 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47177 * 89.99746 * 25 23 21 27 27 H 1.48506 * 109.46893 * 209.99561 * 25 23 21 28 28 H 1.48497 * 109.47570 * 329.99513 * 25 23 21 29 29 C 1.54268 * 110.02688 * 183.61963 * 14 13 12 30 30 C 1.53112 * 109.54290 * 310.27808 * 8 7 6 31 31 C 1.50595 * 129.16348 * 179.77611 * 5 4 3 32 32 H 1.08999 * 109.47178 * 269.99700 * 1 2 3 33 33 H 1.09002 * 109.47350 * 30.00134 * 1 2 3 34 34 H 1.09007 * 109.47075 * 149.99812 * 1 2 3 35 35 H 1.08998 * 109.68906 * 76.74284 * 7 6 2 36 36 H 1.08996 * 109.72637 * 316.17550 * 7 6 2 37 37 H 0.97010 * 119.99854 * 0.02562 * 12 10 8 38 38 H 1.08993 * 109.47452 * 60.00368 * 13 12 10 39 39 H 1.09000 * 109.47175 * 300.00158 * 13 12 10 40 40 H 1.09000 * 110.02753 * 238.57158 * 16 14 13 41 41 H 1.09000 * 110.03022 * 359.97438 * 16 14 13 42 42 H 1.08998 * 110.48944 * 142.28623 * 17 16 14 43 43 H 1.08999 * 110.48805 * 264.79796 * 17 16 14 44 44 H 0.96996 * 119.99916 * 93.54087 * 20 18 17 45 45 H 0.97001 * 119.99795 * 180.02562 * 24 23 21 46 46 H 1.08996 * 110.49161 * 335.78425 * 29 14 13 47 47 H 1.09006 * 110.48320 * 98.43281 * 29 14 13 48 48 H 1.08997 * 109.45367 * 190.10815 * 30 8 7 49 49 H 1.09000 * 109.45409 * 310.04123 * 30 8 7 50 50 H 1.08996 * 109.69379 * 316.34331 * 31 5 4 51 51 H 1.09012 * 109.68635 * 76.87797 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6943 -0.0005 5 6 3.5328 -0.6331 -0.0015 6 6 2.2552 -1.0872 -0.0005 7 6 1.8722 -2.5430 0.0021 8 6 3.1013 -3.3644 0.4127 9 1 3.3142 -3.1964 1.4684 10 6 2.8267 -4.8282 0.1827 11 8 1.7563 -5.1812 -0.2652 12 7 3.7704 -5.7450 0.4746 13 6 3.5036 -7.1679 0.2504 14 6 4.7286 -7.9874 0.6612 15 1 5.6122 -7.6271 0.1344 16 6 4.9440 -7.8876 2.1815 17 6 4.8349 -9.3225 2.7372 18 6 5.1694 -10.2260 1.5244 19 1 6.2473 -10.2897 1.3758 20 7 4.5912 -11.5611 1.6964 21 6 5.2830 -12.5236 2.3821 22 1 6.2550 -12.2987 2.7957 23 6 4.7354 -13.7888 2.5447 24 7 3.5511 -14.0631 2.0401 25 14 5.6793 -15.1020 3.4794 26 1 5.3253 -15.0352 4.9200 27 1 5.3255 -16.4413 2.9443 28 1 7.1376 -14.8736 3.3169 29 6 4.4960 -9.4795 0.3461 30 6 4.3082 -2.9341 -0.4256 31 6 4.7469 -1.5241 -0.0070 32 1 -0.3633 -0.0001 1.0276 33 1 -0.3634 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5139 35 1 1.5490 -2.8395 -0.9958 36 1 1.0643 -2.7097 0.7145 37 1 4.6265 -5.4626 0.8330 38 1 3.2910 -7.3359 -0.8053 39 1 2.6447 -7.4749 0.8473 40 1 5.9325 -7.4796 2.3925 41 1 4.1761 -7.2550 2.6267 42 1 5.5571 -9.4772 3.5388 43 1 3.8234 -9.5177 3.0934 44 1 3.7184 -11.7632 1.3248 45 1 3.1683 -14.9470 2.1541 46 1 3.4292 -9.7009 0.3140 47 1 4.9711 -9.7488 -0.5974 48 1 5.1297 -3.6321 -0.2642 49 1 4.0354 -2.9329 -1.4809 50 1 5.4793 -1.1425 -0.7182 51 1 5.1849 -1.5540 0.9908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086787617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:24 Heat of formation + Delta-G solvation = 24.657722 kcal Electronic energy + Delta-G solvation = -29900.122033 eV Core-core repulsion = 25834.637243 eV Total energy + Delta-G solvation = -4065.484790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.43157 -41.10685 -39.48342 -37.62623 -36.30797 -35.86489 -34.95427 -32.62873 -31.58108 -31.48837 -30.11692 -28.81488 -28.66733 -26.35863 -25.20012 -24.57436 -24.07949 -22.40039 -21.78412 -21.13526 -20.64301 -20.32841 -19.12222 -18.43855 -17.90843 -17.44535 -17.25595 -16.73515 -16.62263 -16.16025 -15.69092 -15.51698 -15.22452 -14.88625 -14.83787 -14.70199 -14.58591 -14.23817 -14.12013 -13.88366 -13.68354 -13.56109 -13.27967 -13.10318 -13.01728 -12.93390 -12.68055 -12.58740 -12.30772 -12.15692 -12.10985 -11.93327 -11.91750 -11.73361 -11.62394 -11.53846 -11.45964 -11.19184 -10.95201 -10.87251 -10.74299 -10.01382 -9.86681 -8.95600 -7.92631 -5.20287 0.53353 1.43597 1.47970 1.48047 1.49355 1.57730 1.67153 2.20361 2.58011 3.17368 3.39919 3.43394 3.71648 3.73915 3.77699 3.79764 3.83804 3.85786 3.96124 4.16005 4.24259 4.31189 4.35248 4.44837 4.46031 4.52532 4.55520 4.56728 4.67532 4.68700 4.71665 4.83834 4.85496 4.90709 4.92459 4.98308 5.05776 5.10943 5.13862 5.19638 5.23893 5.26088 5.34777 5.43448 5.50926 5.53841 5.61025 5.62652 5.68439 6.30546 6.63123 7.31508 7.35678 7.44991 8.15376 8.36173 9.31121 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031843 B = 0.001595 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.115827 B =17546.800953 C =17953.775566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.278 5.278 3 N -0.131 5.131 4 N -0.300 5.300 5 C -0.033 4.033 6 C -0.015 4.015 7 C -0.020 4.020 8 C -0.093 4.093 9 H 0.126 0.874 10 C 0.520 3.480 11 O -0.584 6.584 12 N -0.710 5.710 13 C 0.134 3.866 14 C -0.083 4.083 15 H 0.106 0.894 16 C -0.107 4.107 17 C -0.140 4.140 18 C 0.162 3.838 19 H 0.052 0.948 20 N -0.737 5.737 21 C -0.237 4.237 22 H 0.076 0.924 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.289 1.289 27 H -0.297 1.297 28 H -0.268 1.268 29 C -0.116 4.116 30 C -0.104 4.104 31 C -0.028 4.028 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.418 0.582 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.069 0.931 50 H 0.094 0.906 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 29.807 -4.687 30.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.071 5.071 3 N -0.109 5.109 4 N -0.164 5.164 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.060 4.060 8 C -0.115 4.115 9 H 0.144 0.856 10 C 0.307 3.693 11 O -0.464 6.464 12 N -0.362 5.362 13 C 0.010 3.990 14 C -0.102 4.102 15 H 0.124 0.876 16 C -0.145 4.145 17 C -0.181 4.181 18 C 0.054 3.946 19 H 0.070 0.930 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.094 0.906 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.800 3.200 26 H -0.216 1.216 27 H -0.224 1.224 28 H -0.193 1.193 29 C -0.155 4.155 30 C -0.142 4.142 31 C -0.067 4.067 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.256 0.744 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.202 0.798 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.128 0.872 49 H 0.087 0.913 50 H 0.112 0.888 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.309 31.075 -4.920 31.490 hybrid contribution -0.336 -2.098 0.582 2.203 sum -1.645 28.978 -4.338 29.347 Atomic orbital electron populations 1.22729 0.70268 1.07576 1.06809 1.47213 1.10640 1.04023 1.45213 1.78515 0.96467 1.12511 1.23386 1.74747 1.10286 1.13591 1.17743 1.22327 0.96639 0.90947 1.07556 1.22057 0.91097 0.92745 1.09145 1.19900 0.98217 0.83644 1.04216 1.21306 0.96688 0.89196 1.04298 0.85606 1.20785 0.83370 0.88621 0.76533 1.90720 1.26398 1.82669 1.46601 1.45871 1.18717 1.06066 1.65547 1.21312 0.97350 0.79809 1.00570 1.21829 0.97993 0.93471 0.96928 0.87612 1.22144 1.02851 0.95448 0.94066 1.22900 0.99812 0.96310 0.99028 1.21492 0.95970 0.83625 0.93529 0.92980 1.42618 1.20923 1.08733 1.65306 1.19651 1.00236 0.91562 1.25410 0.90580 1.25555 0.98175 1.00092 1.03351 1.69821 1.18608 1.21546 1.52307 0.85168 0.78423 0.78449 0.77919 1.21649 1.22423 1.19259 1.22475 1.00315 0.94516 0.98234 1.21668 0.96669 0.96278 0.99608 1.20088 0.91460 0.90694 1.04455 0.87174 0.86888 0.86274 0.89105 0.88775 0.74412 0.92061 0.93293 0.89419 0.91238 0.93351 0.94467 0.79763 0.94190 0.92840 0.91216 0.87204 0.91254 0.88770 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.27 127.77 1.44 1.82 16 2 N -0.28 -4.40 3.73 -356.39 -1.33 -5.73 16 3 N -0.13 -2.98 13.19 37.02 0.49 -2.49 16 4 N -0.30 -7.18 12.40 -48.99 -0.61 -7.79 16 5 C -0.03 -0.58 7.11 41.75 0.30 -0.28 16 6 C -0.02 -0.23 6.76 41.50 0.28 0.05 16 7 C -0.02 -0.24 4.68 29.94 0.14 -0.10 16 8 C -0.09 -0.88 2.50 -11.36 -0.03 -0.91 16 9 H 0.13 0.77 8.11 -2.39 -0.02 0.75 16 10 C 0.52 8.23 7.15 87.66 0.63 8.86 16 11 O -0.58 -14.72 15.82 -3.04 -0.05 -14.77 16 12 N -0.71 -9.18 5.11 -463.06 -2.37 -11.55 16 13 C 0.13 2.56 4.70 86.38 0.41 2.96 16 14 C -0.08 -1.58 2.98 -10.07 -0.03 -1.61 16 15 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 16 C -0.11 -2.15 6.13 31.32 0.19 -1.95 16 17 C -0.14 -4.47 6.51 31.67 0.21 -4.26 16 18 C 0.16 5.96 3.53 46.28 0.16 6.12 16 19 H 0.05 1.92 8.12 -2.39 -0.02 1.90 16 20 N -0.74 -36.59 5.26 -316.82 -1.67 -38.25 16 21 C -0.24 -12.99 9.98 84.04 0.84 -12.15 16 22 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 24 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 25 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 27 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 C -0.12 -3.34 5.97 31.67 0.19 -3.15 16 30 C -0.10 -0.70 5.18 30.80 0.16 -0.54 16 31 C -0.03 -0.26 6.30 29.98 0.19 -0.07 16 32 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.12 0.25 7.96 -2.38 -0.02 0.23 16 35 H 0.09 1.22 7.78 -2.39 -0.02 1.20 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.42 2.61 7.64 -92.70 -0.71 1.90 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.29 7.58 -2.39 -0.02 1.27 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.37 20.02 7.73 -92.71 -0.72 19.30 16 45 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.05 1.71 7.74 -2.39 -0.02 1.69 16 47 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 48 H 0.11 0.21 7.30 -2.39 -0.02 0.19 16 49 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 50 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -80.47 407.62 1.84 -78.63 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.48 Total: 22.72 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.54 Total: -9.31 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -5.20 Total: -125.21 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.05 Total: -14.77 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -80.47 1.84 -78.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086787617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.285 kcal (2) G-P(sol) polarization free energy of solvation -80.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds