Wall clock time and date at job start Wed Apr 1 2020 05:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47288 * 2 1 4 4 N 1.28513 * 124.44778 * 269.97858 * 3 2 1 5 5 C 1.31133 * 109.06423 * 179.73281 * 4 3 2 6 6 C 1.40928 * 105.77362 * 0.42892 * 5 4 3 7 7 C 1.47793 * 127.23575 * 179.84296 * 6 5 4 8 8 O 1.21553 * 120.00309 * 359.70495 * 7 6 5 9 9 N 1.34780 * 119.99930 * 179.71159 * 7 6 5 10 10 C 1.47570 * 125.62845 * 359.97438 * 9 7 6 11 11 C 1.54122 * 104.78484 * 203.32331 * 10 9 7 12 12 C 1.54385 * 102.47773 * 323.92000 * 11 10 9 13 13 C 1.47087 * 125.62848 * 180.02562 * 9 7 6 14 14 H 1.08995 * 110.00488 * 59.51386 * 13 9 7 15 15 C 1.52998 * 109.87517 * 298.43129 * 13 9 7 16 16 C 1.52110 * 110.69844 * 206.06718 * 11 10 9 17 17 C 1.53339 * 109.44998 * 176.93992 * 16 11 10 18 18 N 1.46925 * 108.68600 * 53.29939 * 17 16 11 19 19 C 1.36943 * 120.55304 * 125.65450 * 18 17 16 20 20 H 1.08000 * 119.99720 * 332.15831 * 19 18 17 21 21 C 1.38804 * 119.99836 * 152.15985 * 19 18 17 22 22 N 1.31614 * 120.00404 * 342.66806 * 21 19 18 23 23 Si 1.86808 * 119.99737 * 162.67126 * 21 19 18 24 24 H 1.48502 * 109.46858 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46881 * 299.99664 * 23 21 19 26 26 H 1.48496 * 109.47261 * 59.99625 * 23 21 19 27 27 C 1.46929 * 118.89433 * 305.92373 * 18 17 16 28 28 C 1.52112 * 110.69296 * 81.77830 * 11 10 9 29 29 N 1.28592 * 124.44427 * 89.99563 * 3 2 1 30 30 H 1.09002 * 109.47121 * 60.00281 * 1 2 3 31 31 H 1.09004 * 109.47209 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47668 * 299.99921 * 1 2 3 33 33 H 1.09001 * 109.47668 * 240.00079 * 2 1 3 34 34 H 1.09002 * 109.47121 * 119.99718 * 2 1 3 35 35 H 1.08002 * 127.11337 * 180.29527 * 5 4 3 36 36 H 1.09004 * 110.37883 * 84.49761 * 10 9 7 37 37 H 1.09000 * 110.37471 * 322.14919 * 10 9 7 38 38 H 1.09001 * 110.73150 * 152.98570 * 12 11 10 39 39 H 1.08998 * 110.73734 * 276.12080 * 12 11 10 40 40 H 1.09006 * 109.47172 * 302.16433 * 15 13 9 41 41 H 1.08996 * 109.47415 * 62.16257 * 15 13 9 42 42 H 1.08999 * 109.47096 * 182.17133 * 15 13 9 43 43 H 1.09009 * 109.47193 * 56.94303 * 16 11 10 44 44 H 1.09001 * 109.47417 * 296.93968 * 16 11 10 45 45 H 1.09000 * 109.59558 * 293.53943 * 17 16 11 46 46 H 1.08995 * 109.73187 * 173.14106 * 17 16 11 47 47 H 0.97006 * 120.00370 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.60111 * 173.83686 * 27 18 17 49 49 H 1.09003 * 109.59902 * 294.31312 * 27 18 17 50 50 H 1.08996 * 109.47104 * 303.05412 * 28 11 10 51 51 H 1.09000 * 109.47038 * 63.06605 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 -1.0598 5 6 2.6769 3.2604 -0.7119 6 6 2.6856 3.2675 0.6973 7 6 3.0800 4.3826 1.5835 8 8 3.4525 5.4363 1.1056 9 7 3.0266 4.2311 2.9217 10 6 2.5952 3.0118 3.6323 11 6 2.1441 3.5048 5.0211 12 6 3.1458 4.6428 5.3127 13 6 3.3879 5.2541 3.9149 14 1 2.7639 6.1381 3.7836 15 6 4.8627 5.6309 3.7608 16 6 2.2801 2.3973 6.0550 17 6 1.8973 2.9395 7.4373 18 7 0.5665 3.5559 7.3492 19 6 -0.4386 3.1659 8.1936 20 1 -0.4459 2.1645 8.5981 21 6 -1.4479 4.0576 8.5296 22 7 -1.2788 5.3478 8.3322 23 14 -3.0463 3.4262 9.2618 24 1 -3.9536 4.5707 9.5308 25 1 -3.6949 2.4940 8.3050 26 1 -2.7609 2.7122 10.5322 27 6 0.3304 4.5935 6.3361 28 6 0.7238 4.0463 4.9641 29 7 2.2607 2.0669 1.0605 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 2.9571 4.0701 -1.3694 36 1 3.4272 2.3143 3.7290 37 1 1.7634 2.5413 3.1080 38 1 2.7071 5.3801 5.9851 39 1 4.0712 4.2451 5.7291 40 1 5.4794 4.7394 3.8756 41 1 5.0265 6.0610 2.7728 42 1 5.1330 6.3604 4.5242 43 1 3.3112 2.0442 6.0758 44 1 1.6185 1.5718 5.7924 45 1 2.6262 3.6864 7.7517 46 1 1.8753 2.1234 8.1595 47 1 -1.9841 5.9710 8.5674 48 1 -0.7251 4.8656 6.3305 49 1 0.9354 5.4712 6.5637 50 1 0.6686 4.8441 4.2236 51 1 0.0401 3.2442 4.6860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086919890.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:57 Heat of formation + Delta-G solvation = 80.935207 kcal Electronic energy + Delta-G solvation = -32308.946219 eV Core-core repulsion = 28245.901804 eV Total energy + Delta-G solvation = -4063.044415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.71443 -41.69976 -39.74304 -37.52427 -35.82172 -34.83038 -34.01844 -32.66506 -32.54228 -31.63852 -31.21919 -28.73073 -27.17216 -26.38239 -25.65243 -24.91586 -23.92408 -22.82231 -22.50448 -22.31833 -20.38041 -19.62944 -18.54942 -18.29029 -18.07948 -17.63920 -17.21720 -16.84001 -16.25619 -15.92671 -15.69614 -15.54040 -15.16698 -15.15827 -15.03287 -14.62994 -14.48595 -14.19129 -14.06031 -13.69449 -13.49276 -13.24594 -13.18243 -13.10951 -13.01429 -12.95200 -12.77923 -12.53326 -12.39231 -12.29479 -12.21292 -12.13675 -11.93834 -11.77067 -11.73211 -11.51419 -11.38067 -11.18967 -11.08086 -10.96966 -10.52150 -10.47026 -9.69657 -8.61036 -7.83813 -5.27845 0.20803 0.87236 1.18067 1.47482 1.49657 1.56041 1.87065 2.13193 2.53565 2.82958 3.29306 3.43812 3.54191 3.72662 3.80350 3.87749 3.91758 3.93972 4.03322 4.16098 4.24197 4.25661 4.30344 4.48026 4.54709 4.57234 4.60104 4.67171 4.73815 4.74413 4.79656 4.81114 4.85665 4.93883 4.95632 5.00393 5.05996 5.12309 5.15603 5.27245 5.29325 5.31131 5.40370 5.42526 5.46110 5.57863 5.59538 5.68998 5.82376 6.38591 6.43085 6.89914 7.11105 7.19305 7.92559 8.43047 9.21877 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.003327 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.727357 B = 8414.457395 C = 9909.929339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.134 5.134 4 N -0.296 5.296 5 C 0.029 3.971 6 C -0.065 4.065 7 C 0.618 3.382 8 O -0.560 6.560 9 N -0.595 5.595 10 C 0.123 3.877 11 C -0.054 4.054 12 C -0.110 4.110 13 C 0.136 3.864 14 H 0.060 0.940 15 C -0.151 4.151 16 C -0.103 4.103 17 C 0.143 3.857 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.961 3.039 24 H -0.297 1.297 25 H -0.280 1.280 26 H -0.274 1.274 27 C 0.184 3.816 28 C -0.108 4.108 29 N -0.246 5.246 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.050 0.950 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.222 0.778 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.020 0.980 46 H 0.053 0.947 47 H 0.248 0.752 48 H 0.045 0.955 49 H 0.002 0.998 50 H 0.046 0.954 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.304 -11.345 -16.659 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.003 3.997 3 N -0.039 5.039 4 N -0.136 5.136 5 C -0.154 4.154 6 C -0.226 4.226 7 C 0.405 3.595 8 O -0.438 6.438 9 N -0.326 5.326 10 C 0.000 4.000 11 C -0.055 4.055 12 C -0.148 4.148 13 C 0.034 3.966 14 H 0.078 0.922 15 C -0.209 4.209 16 C -0.142 4.142 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.790 3.210 24 H -0.224 1.224 25 H -0.206 1.206 26 H -0.200 1.200 27 C 0.058 3.942 28 C -0.147 4.147 29 N -0.095 5.095 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.239 0.761 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.020 0.980 50 H 0.064 0.936 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.963 -11.949 -16.929 22.992 hybrid contribution -1.033 1.241 0.546 1.705 sum 8.929 -10.708 -16.383 21.513 Atomic orbital electron populations 1.22176 0.92467 1.05514 1.02393 1.22622 0.96548 0.72272 1.08251 1.48885 1.41999 1.14363 0.98618 1.73985 1.18014 1.05487 1.16075 1.25114 1.01225 0.95749 0.93296 1.22876 1.10905 0.93762 0.95073 1.16437 0.77658 0.85043 0.80390 1.90760 1.49899 1.27984 1.75194 1.48462 1.63671 1.16497 1.04015 1.22485 1.00254 0.86097 0.91140 1.20917 0.94356 0.96036 0.94203 1.22727 0.99843 0.97890 0.94340 1.21666 0.96968 0.90496 0.87501 0.92229 1.22045 0.93930 1.02318 1.02570 1.21692 1.01802 0.96394 0.94355 1.21077 0.85959 0.95632 0.95575 1.44258 1.07778 1.44649 1.36461 1.19489 1.02526 0.95197 1.21854 0.91530 1.25723 1.03049 0.95008 1.00731 1.70174 1.33192 1.01460 1.53206 0.85437 0.80154 0.76851 0.78602 1.22370 1.20612 1.20011 1.20427 0.98803 0.89123 0.85852 1.21658 0.95778 0.99368 0.97870 1.74481 1.14549 1.04479 1.16009 0.92351 0.86547 0.93125 0.84660 0.85217 0.76126 0.89676 0.89745 0.91118 0.88516 0.91601 0.92883 0.90101 0.89197 0.92223 0.96163 0.92803 0.94334 0.93654 0.98002 0.93555 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 71.98 0.74 -0.98 16 2 C 0.12 1.24 7.24 86.38 0.63 1.86 16 3 N -0.13 -2.65 3.94 -187.51 -0.74 -3.39 16 4 N -0.30 -6.46 12.01 -56.16 -0.67 -7.13 16 5 C 0.03 0.67 12.04 85.46 1.03 1.70 16 6 C -0.07 -1.74 7.02 42.24 0.30 -1.44 16 7 C 0.62 18.77 7.65 86.77 0.66 19.44 16 8 O -0.56 -19.45 15.99 -3.88 -0.06 -19.51 16 9 N -0.59 -16.88 3.06 -792.25 -2.42 -19.30 16 10 C 0.12 3.18 5.06 86.55 0.44 3.62 16 11 C -0.05 -1.61 0.55 -51.92 -0.03 -1.64 16 12 C -0.11 -3.08 4.45 31.56 0.14 -2.94 16 13 C 0.14 3.80 3.08 45.38 0.14 3.94 16 14 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 15 C -0.15 -3.60 9.10 71.98 0.65 -2.95 16 16 C -0.10 -3.00 4.84 30.41 0.15 -2.86 16 17 C 0.14 5.42 6.25 86.41 0.54 5.96 16 18 N -0.61 -29.38 2.99 -699.45 -2.09 -31.47 16 19 C -0.26 -14.03 9.57 84.03 0.80 -13.22 16 20 H 0.07 3.48 7.89 -2.91 -0.02 3.45 16 21 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 22 N -0.93 -55.18 11.20 21.65 0.24 -54.94 16 23 Si 0.96 44.60 29.59 68.60 2.03 46.63 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 27 C 0.18 8.70 4.99 86.25 0.43 9.13 16 28 C -0.11 -4.04 4.84 30.25 0.15 -3.89 16 29 N -0.25 -5.91 9.32 -48.17 -0.45 -6.35 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.22 4.08 8.06 -2.91 -0.02 4.06 16 36 H 0.09 1.92 7.99 -2.38 -0.02 1.90 16 37 H 0.08 2.31 6.17 -2.39 -0.01 2.30 16 38 H 0.07 2.33 6.19 -2.39 -0.01 2.31 16 39 H 0.10 2.28 7.69 -2.39 -0.02 2.26 16 40 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.05 1.44 6.89 -2.39 -0.02 1.42 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.09 2.02 8.09 -2.38 -0.02 2.00 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.02 0.77 7.62 -2.39 -0.02 0.75 16 46 H 0.05 2.01 7.93 -2.39 -0.02 2.00 16 47 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 48 H 0.05 2.51 6.02 -2.39 -0.01 2.49 16 49 H 0.00 0.10 6.56 -2.39 -0.02 0.09 16 50 H 0.05 1.73 7.81 -2.39 -0.02 1.71 16 51 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -70.47 395.86 3.94 -66.53 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.92 Total: 15.54 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 7.18 Total: 13.39 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -6.13 Total: -122.58 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -70.47 3.94 -66.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086919890.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.466 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds