Wall clock time and date at job start Wed Apr 1 2020 05:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46893 * 2 1 4 4 N 1.28519 * 124.44617 * 89.97750 * 3 2 1 5 5 C 1.31127 * 109.06018 * 180.02562 * 4 3 2 6 6 C 1.40925 * 105.77478 * 0.02562 * 5 4 3 7 7 C 1.47807 * 127.23363 * 179.97438 * 6 5 4 8 8 O 1.21557 * 120.00279 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.47565 * 125.62985 * 359.97438 * 9 7 6 11 11 C 1.54136 * 104.87557 * 156.60358 * 10 9 7 12 12 C 1.54661 * 102.34876 * 36.07418 * 11 10 9 13 13 C 1.47085 * 125.62504 * 179.97438 * 9 7 6 14 14 H 1.09007 * 109.87653 * 300.43757 * 13 9 7 15 15 C 1.52995 * 109.88154 * 61.44006 * 13 9 7 16 16 C 1.52110 * 110.65456 * 278.24689 * 11 10 9 17 17 C 1.53334 * 109.44962 * 295.60760 * 16 11 10 18 18 N 1.46928 * 108.69670 * 306.71285 * 17 16 11 19 19 C 1.36932 * 120.55344 * 234.36780 * 18 17 16 20 20 H 1.08004 * 120.00023 * 152.45475 * 19 18 17 21 21 C 1.38817 * 120.00086 * 332.45076 * 19 18 17 22 22 N 1.31621 * 119.99701 * 159.33217 * 21 19 18 23 23 Si 1.86797 * 119.99986 * 339.33756 * 21 19 18 24 24 H 1.48499 * 109.47295 * 93.32108 * 23 21 19 25 25 H 1.48501 * 109.46779 * 213.31583 * 23 21 19 26 26 H 1.48496 * 109.47289 * 333.31953 * 23 21 19 27 27 C 1.46936 * 118.88792 * 54.34409 * 18 17 16 28 28 C 1.52118 * 110.64751 * 154.02198 * 11 10 9 29 29 N 1.28591 * 124.44305 * 270.27921 * 3 2 1 30 30 H 1.09002 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47081 * 299.99938 * 1 2 3 32 32 H 1.08999 * 109.47388 * 59.99868 * 1 2 3 33 33 H 1.08991 * 109.46820 * 239.99675 * 2 1 3 34 34 H 1.08995 * 109.47119 * 119.99688 * 2 1 3 35 35 H 1.08004 * 127.11507 * 180.02562 * 5 4 3 36 36 H 1.09002 * 110.37422 * 275.47974 * 10 9 7 37 37 H 1.08994 * 110.37607 * 37.72086 * 10 9 7 38 38 H 1.08997 * 110.71770 * 207.02343 * 12 11 10 39 39 H 1.09004 * 110.87110 * 83.80363 * 12 11 10 40 40 H 1.09003 * 109.47131 * 58.54655 * 15 13 9 41 41 H 1.08999 * 109.47066 * 178.54374 * 15 13 9 42 42 H 1.09000 * 109.47198 * 298.54800 * 15 13 9 43 43 H 1.09002 * 109.47296 * 55.60720 * 16 11 10 44 44 H 1.09007 * 109.47328 * 175.62106 * 16 11 10 45 45 H 1.09000 * 109.60305 * 186.94814 * 17 16 11 46 46 H 1.09008 * 109.59845 * 66.47791 * 17 16 11 47 47 H 0.97005 * 119.99742 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.59804 * 185.88486 * 27 18 17 49 49 H 1.08997 * 109.60374 * 65.41238 * 27 18 17 50 50 H 1.08999 * 109.47660 * 184.37239 * 28 11 10 51 51 H 1.08993 * 109.47167 * 304.39326 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2602 2.0668 1.0598 5 6 2.6812 3.2589 0.7119 6 6 2.6840 3.2680 -0.6973 7 6 3.0772 4.3836 -1.5836 8 8 3.4487 5.4377 -1.1057 9 7 3.0229 4.2323 -2.9218 10 6 2.5924 3.0127 -3.6323 11 6 2.1371 3.5034 -5.0207 12 6 3.1386 4.6453 -5.3127 13 6 3.3829 5.2557 -3.9150 14 1 2.7569 6.1381 -3.7816 15 6 4.8568 5.6355 -3.7599 16 6 0.7158 4.0418 -4.9600 17 6 -0.2461 2.9041 -4.5975 18 7 -0.0354 1.7925 -5.5350 19 6 -1.0839 1.2744 -6.2472 20 1 -0.9082 0.8096 -7.2061 21 6 -2.3728 1.3464 -5.7367 22 7 -3.4072 1.2378 -6.5433 23 14 -2.6391 1.5977 -3.9049 24 1 -2.7877 3.0476 -3.6206 25 1 -3.8690 0.8816 -3.4808 26 1 -1.4725 1.0636 -3.1572 27 6 1.3192 1.2467 -5.6959 28 6 2.2720 2.3939 -6.0526 29 7 2.2558 2.0687 -1.0605 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.9667 4.0668 1.3694 36 1 3.4254 2.3166 -3.7302 37 1 1.7632 2.5397 -3.1062 38 1 2.6981 5.3822 -5.9842 39 1 4.0659 4.2516 -5.7289 40 1 5.4761 4.7475 -3.8866 41 1 5.1230 6.3748 -4.5153 42 1 5.0215 6.0547 -2.7673 43 1 0.6555 4.8239 -4.2031 44 1 0.4415 4.4540 -5.9312 45 1 -1.2747 3.2566 -4.6736 46 1 -0.0470 2.5671 -3.5801 47 1 -4.3078 1.2884 -6.1866 48 1 1.3225 0.5065 -6.4961 49 1 1.6393 0.7818 -4.7634 50 1 2.0197 2.7825 -7.0392 51 1 3.2979 2.0259 -6.0583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086919891.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:02 Heat of formation + Delta-G solvation = 83.809972 kcal Electronic energy + Delta-G solvation = -33270.107638 eV Core-core repulsion = 29207.187883 eV Total energy + Delta-G solvation = -4062.919756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.75478 -41.75783 -39.80931 -37.71377 -35.88371 -34.85884 -34.09501 -33.02617 -32.60969 -32.00032 -31.28139 -28.93209 -27.10722 -26.29931 -25.73024 -24.92979 -24.39311 -23.18192 -22.50576 -22.15416 -20.41875 -19.84416 -18.69587 -18.31441 -18.15395 -17.69837 -17.25752 -17.22058 -16.31801 -15.95773 -15.90762 -15.43901 -15.36615 -15.26356 -15.19820 -14.94258 -14.44753 -14.29340 -14.11615 -13.82402 -13.70769 -13.58557 -13.23980 -13.23495 -13.14447 -13.04685 -12.86771 -12.62238 -12.43392 -12.33082 -12.19624 -12.15437 -12.04434 -11.99609 -11.64216 -11.56638 -11.43988 -11.23313 -11.13443 -11.01986 -10.65432 -10.56875 -9.70940 -8.88420 -8.16974 -5.45805 0.17819 0.84250 1.12828 1.24854 1.33410 1.42635 1.85518 2.10461 2.38807 2.80600 3.05293 3.36473 3.40066 3.47552 3.74032 3.78891 3.82030 3.88218 3.98106 4.11603 4.13483 4.16406 4.29148 4.34590 4.44023 4.46268 4.53671 4.57625 4.62744 4.63629 4.66709 4.74222 4.80374 4.81905 4.85552 4.93870 5.02078 5.02766 5.04831 5.12028 5.18302 5.23316 5.26062 5.29178 5.38882 5.43743 5.53021 5.57742 5.89158 6.14458 6.33560 6.87514 6.93671 7.08492 7.64731 8.06281 9.03105 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008778 B = 0.005513 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.003614 B = 5077.809641 C = 7307.518118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.137 5.137 4 N -0.295 5.295 5 C 0.030 3.970 6 C -0.068 4.068 7 C 0.619 3.381 8 O -0.557 6.557 9 N -0.596 5.596 10 C 0.114 3.886 11 C -0.057 4.057 12 C -0.107 4.107 13 C 0.131 3.869 14 H 0.068 0.932 15 C -0.152 4.152 16 C -0.109 4.109 17 C 0.129 3.871 18 N -0.614 5.614 19 C -0.236 4.236 20 H 0.059 0.941 21 C -0.031 4.031 22 N -0.956 5.956 23 Si 0.936 3.064 24 H -0.293 1.293 25 H -0.312 1.312 26 H -0.257 1.257 27 C 0.141 3.859 28 C -0.106 4.106 29 N -0.251 5.251 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.226 0.774 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.022 0.978 47 H 0.259 0.741 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.065 0.935 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.840 1.568 10.750 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 N -0.041 5.041 4 N -0.135 5.135 5 C -0.153 4.153 6 C -0.229 4.229 7 C 0.406 3.594 8 O -0.434 6.434 9 N -0.327 5.327 10 C -0.009 4.009 11 C -0.058 4.058 12 C -0.144 4.144 13 C 0.029 3.971 14 H 0.086 0.914 15 C -0.210 4.210 16 C -0.148 4.148 17 C 0.004 3.996 18 N -0.338 5.338 19 C -0.366 4.366 20 H 0.077 0.923 21 C -0.226 4.226 22 N -0.603 5.603 23 Si 0.767 3.233 24 H -0.221 1.221 25 H -0.242 1.242 26 H -0.181 1.181 27 C 0.017 3.983 28 C -0.145 4.145 29 N -0.100 5.100 30 H 0.133 0.867 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.053 0.947 50 H 0.083 0.917 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.461 0.816 11.060 20.685 hybrid contribution -0.987 0.913 0.812 1.571 sum 16.473 1.729 11.872 20.379 Atomic orbital electron populations 1.22211 0.93337 1.05462 1.01988 1.22542 0.95848 0.72616 1.08305 1.48809 1.42388 1.14231 0.98716 1.73969 1.17851 1.05677 1.15962 1.25160 1.01109 0.95753 0.93287 1.23044 1.10649 0.93916 0.95314 1.16361 0.77662 0.84866 0.80545 1.90753 1.49848 1.27646 1.75193 1.48489 1.63637 1.16590 1.04029 1.22547 1.00006 0.86300 0.91998 1.20989 0.94107 0.96427 0.94281 1.22822 0.99919 0.97248 0.94429 1.21810 0.97142 0.90516 0.87666 0.91370 1.22055 0.93927 1.02331 1.02659 1.21694 0.94767 0.97001 1.01367 1.21257 0.97459 0.88852 0.91998 1.44434 1.05140 1.35581 1.48669 1.18909 0.86185 1.32743 0.98742 0.92346 1.25781 0.95533 1.00847 1.00430 1.69953 0.98437 1.56385 1.35520 0.86068 0.76433 0.76373 0.84401 1.22112 1.24154 1.18140 1.21189 0.83097 0.94955 0.99049 1.21733 1.00101 0.94892 0.97803 1.74543 1.14495 1.04763 1.16183 0.86652 0.91690 0.94583 0.85663 0.83914 0.75736 0.90071 0.90474 0.88800 0.87867 0.91942 0.89351 0.93290 0.92502 0.91716 0.94353 0.96061 0.93187 0.92238 0.94719 0.91668 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 10.24 71.98 0.74 -2.52 16 2 C 0.12 2.06 7.24 86.38 0.63 2.69 16 3 N -0.14 -3.37 3.94 -187.51 -0.74 -4.11 16 4 N -0.30 -7.38 12.01 -56.16 -0.67 -8.06 16 5 C 0.03 0.76 12.04 85.46 1.03 1.79 16 6 C -0.07 -1.96 7.02 42.25 0.30 -1.66 16 7 C 0.62 18.78 7.65 86.77 0.66 19.45 16 8 O -0.56 -18.66 15.98 -3.90 -0.06 -18.72 16 9 N -0.60 -16.12 3.06 -792.22 -2.42 -18.55 16 10 C 0.11 3.04 4.12 86.56 0.36 3.40 16 11 C -0.06 -1.49 0.54 -51.82 -0.03 -1.51 16 12 C -0.11 -2.07 5.44 31.66 0.17 -1.90 16 13 C 0.13 2.95 3.10 45.38 0.14 3.09 16 14 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 15 C -0.15 -2.93 9.11 71.98 0.66 -2.27 16 16 C -0.11 -3.63 4.84 30.41 0.15 -3.48 16 17 C 0.13 5.46 3.89 86.41 0.34 5.80 16 18 N -0.61 -27.32 2.75 -698.49 -1.92 -29.25 16 19 C -0.24 -12.93 10.03 84.04 0.84 -12.08 16 20 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 21 C -0.03 -1.81 5.23 84.86 0.44 -1.37 16 22 N -0.96 -59.71 13.97 21.65 0.30 -59.41 16 23 Si 0.94 47.04 24.36 68.60 1.67 48.71 16 24 H -0.29 -14.63 6.63 99.48 0.66 -13.97 16 25 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 26 H -0.26 -12.14 6.63 99.48 0.66 -11.48 16 27 C 0.14 4.86 6.25 86.41 0.54 5.40 16 28 C -0.11 -2.76 4.85 30.42 0.15 -2.61 16 29 N -0.25 -7.15 9.31 -48.17 -0.45 -7.60 16 30 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.23 4.40 8.06 -2.91 -0.02 4.37 16 36 H 0.08 1.95 7.97 -2.39 -0.02 1.93 16 37 H 0.08 2.47 4.32 -2.39 -0.01 2.46 16 38 H 0.09 1.69 8.02 -2.39 -0.02 1.67 16 39 H 0.10 1.56 7.72 -2.38 -0.02 1.55 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 1.16 6.87 -2.39 -0.02 1.15 16 43 H 0.06 1.84 7.84 -2.39 -0.02 1.82 16 44 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.04 1.86 4.46 -2.39 -0.01 1.85 16 46 H 0.02 0.92 5.56 -2.38 -0.01 0.91 16 47 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 48 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 49 H 0.03 1.13 7.63 -2.39 -0.02 1.12 16 50 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -73.34 389.58 3.64 -69.70 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.83 Total: 15.09 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 7.11 Total: 12.19 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -5.91 Total: -126.96 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.06 Total: -18.72 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.67 Total: 48.71 kcal Total: -73.34 3.64 -69.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086919891.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.509 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds