Wall clock time and date at job start Wed Apr 1 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34949 * 126.03506 * 2 1 4 4 C 1.35318 * 107.74603 * 180.15056 * 3 2 1 5 5 C 1.50699 * 126.04025 * 179.87554 * 4 3 2 6 6 H 1.09000 * 110.30197 * 0.43449 * 5 4 3 7 7 C 1.54390 * 110.34008 * 238.26192 * 5 4 3 8 8 N 1.48150 * 104.61154 * 217.26084 * 7 5 4 9 9 C 1.34777 * 127.83344 * 219.58094 * 8 7 5 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72939 * 9 8 7 12 12 H 1.09003 * 110.33577 * 321.07690 * 11 9 8 13 13 C 1.54900 * 110.37605 * 83.45240 * 11 9 8 14 14 C 1.55141 * 101.65787 * 155.90043 * 13 11 9 15 15 C 1.54317 * 103.01686 * 324.34443 * 14 13 11 16 16 N 1.47443 * 107.23286 * 22.28383 * 15 14 13 17 17 C 1.46905 * 111.00265 * 123.25733 * 16 15 14 18 18 C 1.48140 * 104.32507 * 39.84955 * 8 7 5 19 19 C 1.54285 * 110.34312 * 122.72117 * 5 4 3 20 20 H 1.09000 * 110.34189 * 359.89696 * 19 5 4 21 21 N 1.46498 * 110.34302 * 237.73839 * 19 5 4 22 22 C 1.36937 * 119.99715 * 154.99738 * 21 19 5 23 23 H 1.08002 * 119.99987 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99755 * 180.02562 * 22 21 19 25 25 N 1.31608 * 120.00197 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99651 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47349 * 90.00186 * 26 24 22 28 28 H 1.48505 * 109.47185 * 209.99975 * 26 24 22 29 29 H 1.48493 * 109.47513 * 330.00117 * 26 24 22 30 30 C 1.39874 * 107.91663 * 359.61123 * 4 3 2 31 31 N 1.30830 * 108.20457 * 0.24049 * 30 4 3 32 32 H 1.09000 * 109.46837 * 270.30627 * 1 2 3 33 33 H 1.08998 * 109.47281 * 30.30389 * 1 2 3 34 34 H 1.08994 * 109.46728 * 150.31174 * 1 2 3 35 35 H 1.08000 * 126.12938 * 0.02562 * 3 2 1 36 36 H 1.08997 * 110.41050 * 98.48116 * 7 5 4 37 37 H 1.08997 * 110.51083 * 336.09358 * 7 5 4 38 38 H 1.09008 * 110.98940 * 273.99241 * 13 11 9 39 39 H 1.08995 * 110.99274 * 37.80297 * 13 11 9 40 40 H 1.08999 * 110.70434 * 205.96652 * 14 13 11 41 41 H 1.08996 * 110.85890 * 82.79605 * 14 13 11 42 42 H 1.08998 * 109.89373 * 262.88244 * 15 14 13 43 43 H 1.08998 * 109.89054 * 141.68531 * 15 14 13 44 44 H 1.09001 * 109.46935 * 299.15715 * 17 16 15 45 45 H 1.08995 * 109.46980 * 59.15628 * 17 16 15 46 46 H 1.08995 * 109.47231 * 179.15679 * 17 16 15 47 47 H 1.09001 * 110.41247 * 78.93475 * 18 8 7 48 48 H 1.09004 * 110.40474 * 201.36625 * 18 8 7 49 49 H 0.96999 * 119.99900 * 335.00678 * 21 19 5 50 50 H 0.97006 * 120.00240 * 179.97438 * 25 24 22 51 51 H 1.08005 * 125.89488 * 180.22245 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0034 5 6 4.7680 1.5454 -0.0073 6 1 4.4791 2.5964 0.0007 7 6 5.6446 1.2391 -1.2407 8 7 7.0369 1.3590 -0.7489 9 6 8.0950 1.8987 -1.3857 10 8 7.9616 2.3611 -2.4990 11 6 9.4424 1.9338 -0.7117 12 1 9.3297 2.1592 0.3488 13 6 10.1767 0.5834 -0.9034 14 6 11.6601 1.0072 -0.7399 15 6 11.6941 2.4091 -1.3841 16 7 10.3166 2.9343 -1.3604 17 6 10.2561 4.2219 -0.6559 18 6 7.0036 0.7451 0.5989 19 6 5.6631 1.2235 1.2074 20 1 5.2164 0.4311 1.8079 21 7 5.8681 2.4242 2.0214 22 6 6.1662 2.3061 3.3527 23 1 6.2507 1.3279 3.8025 24 6 6.3599 3.4438 4.1241 25 7 6.2565 4.6359 3.5762 26 14 6.7673 3.2827 5.9400 27 1 8.2408 3.2167 6.1128 28 1 6.2352 4.4595 6.6731 29 1 6.1500 2.0439 6.4779 30 6 3.5347 -0.7321 0.0035 31 7 2.2892 -1.1327 0.0055 32 1 -0.3633 0.0055 1.0277 33 1 -0.3634 0.8872 -0.5185 34 1 -0.3632 -0.8927 -0.5090 35 1 1.9281 2.1194 0.0004 36 1 5.4566 1.9662 -2.0307 37 1 5.4550 0.2285 -1.6025 38 1 9.8875 -0.1311 -0.1327 39 1 9.9939 0.1774 -1.8983 40 1 12.3179 0.3216 -1.2740 41 1 11.9346 1.0605 0.3136 42 1 12.0453 2.3358 -2.4133 43 1 12.3506 3.0644 -0.8117 44 1 10.5836 4.0878 0.3751 45 1 10.9082 4.9395 -1.1538 46 1 9.2316 4.5939 -0.6662 47 1 7.0223 -0.3421 0.5220 48 1 7.8422 1.0991 1.1986 49 1 5.7924 3.3028 1.6174 50 1 6.3914 5.4310 4.1153 51 1 4.4055 -1.3709 0.0063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086971041.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:49 Heat of formation + Delta-G solvation = 82.012400 kcal Electronic energy + Delta-G solvation = -31830.374015 eV Core-core repulsion = 27767.376311 eV Total energy + Delta-G solvation = -4062.997704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.14011 -39.93457 -38.34309 -36.84028 -33.87784 -33.38360 -32.09392 -31.72150 -30.68908 -29.70450 -28.35818 -27.33521 -26.20135 -25.53077 -24.27364 -23.09181 -21.52125 -21.10523 -20.94460 -20.54094 -19.35253 -18.57982 -17.41670 -16.97682 -16.46820 -15.76218 -15.54612 -15.31550 -15.26023 -14.81379 -14.40998 -14.23208 -13.95315 -13.73641 -13.36230 -13.28422 -13.19129 -13.05887 -12.94153 -12.69130 -12.57271 -12.44237 -12.19848 -11.80777 -11.75779 -11.57281 -11.42931 -11.15679 -11.13232 -10.99744 -10.88155 -10.79144 -10.71199 -10.68580 -10.20782 -10.13439 -9.76769 -9.33563 -9.27348 -9.07524 -8.32638 -8.15341 -8.09498 -7.00164 -5.84106 -3.13538 2.03349 2.62563 2.93057 3.08270 3.29698 3.37163 3.43612 3.44783 4.19356 4.49724 4.56096 4.57778 4.69643 4.92729 4.98506 5.03556 5.07109 5.15142 5.18759 5.30229 5.31538 5.40635 5.45963 5.48453 5.55256 5.56346 5.61719 5.67380 5.73898 5.78254 5.81613 5.84792 5.85521 5.90358 6.00146 6.08753 6.15869 6.16624 6.19979 6.28668 6.43332 6.55665 6.58349 6.84080 6.90705 7.02616 7.12912 7.13721 7.63600 7.83010 8.04786 8.33556 8.69416 9.45348 10.01784 10.36311 11.37768 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007190 B = 0.004314 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3893.207935 B = 6489.140691 C = 9375.808719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.382 5.382 3 C 0.059 3.941 4 C -0.208 4.208 5 C -0.033 4.033 6 H 0.088 0.912 7 C 0.119 3.881 8 N -0.616 5.616 9 C 0.547 3.453 10 O -0.534 6.534 11 C 0.058 3.942 12 H 0.084 0.916 13 C -0.114 4.114 14 C -0.141 4.141 15 C 0.044 3.956 16 N -0.513 5.513 17 C 0.023 3.977 18 C 0.071 3.929 19 C 0.177 3.823 20 H 0.069 0.931 21 N -0.713 5.713 22 C -0.243 4.243 23 H 0.071 0.929 24 C -0.009 4.009 25 N -0.929 5.929 26 Si 0.903 3.097 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.056 3.944 31 N -0.304 5.304 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.172 0.828 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.030 0.970 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 -8.652 -8.826 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.165 5.165 3 C -0.086 4.086 4 C -0.220 4.220 5 C -0.054 4.054 6 H 0.106 0.894 7 C -0.004 4.004 8 N -0.350 5.350 9 C 0.334 3.666 10 O -0.409 6.409 11 C -0.054 4.054 12 H 0.102 0.898 13 C -0.152 4.152 14 C -0.179 4.179 15 C -0.084 4.084 16 N -0.237 5.237 17 C -0.126 4.126 18 C -0.055 4.055 19 C 0.065 3.935 20 H 0.087 0.913 21 N -0.353 5.353 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.130 4.130 31 N -0.125 5.125 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.189 0.811 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.102 0.898 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.423 -9.263 -9.792 13.554 hybrid contribution 0.929 0.986 1.979 2.398 sum -0.494 -8.277 -7.814 11.393 Atomic orbital electron populations 1.21777 0.74658 1.04067 1.03165 1.48353 1.06350 1.03933 1.57858 1.22335 0.90881 0.93245 1.02153 1.19852 0.93820 0.93549 1.14784 1.20707 0.91011 0.98558 0.95137 0.89387 1.22269 0.80459 1.01153 0.96516 1.48909 1.08397 1.59116 1.18571 1.19834 0.84220 0.77074 0.85447 1.90646 1.84484 1.46311 1.19491 1.22476 0.91815 0.93315 0.97795 0.89790 1.22607 0.94335 0.95299 1.02983 1.22784 0.96653 0.97154 1.01314 1.22839 0.89706 0.94742 1.01073 1.63076 1.06091 1.02660 1.51898 1.22546 1.03181 0.90932 0.95898 1.23648 1.03166 0.96065 0.82641 1.21258 0.90484 0.91561 0.90197 0.91267 1.42463 1.83678 1.02500 1.06642 1.19228 1.40219 0.92623 0.85320 0.91080 1.24720 1.02528 0.95269 0.97987 1.69658 1.56018 0.96714 1.35256 0.86259 0.77985 0.76915 0.85431 1.21744 1.21815 1.20725 1.23695 0.94947 0.94658 0.99674 1.77281 1.01720 1.08401 1.25117 0.90999 0.89701 0.89643 0.81065 0.90627 0.91539 0.90036 0.90329 0.90504 0.91086 0.90442 0.92519 0.95119 0.91347 0.90974 0.92342 0.89841 0.78113 0.93466 0.80318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.86 11.47 59.85 0.69 1.55 16 2 N -0.38 -4.90 4.01 -68.16 -0.27 -5.18 16 3 C 0.06 0.79 11.39 -17.22 -0.20 0.59 16 4 C -0.21 -2.99 4.72 -105.05 -0.50 -3.49 16 5 C -0.03 -0.51 3.23 -90.37 -0.29 -0.80 16 6 H 0.09 1.51 7.66 -51.93 -0.40 1.11 16 7 C 0.12 1.81 6.55 -2.41 -0.02 1.79 16 8 N -0.62 -10.13 3.31 -169.05 -0.56 -10.69 16 9 C 0.55 9.87 7.20 -10.98 -0.08 9.79 16 10 O -0.53 -11.34 16.86 5.55 0.09 -11.25 16 11 C 0.06 0.90 2.27 -67.34 -0.15 0.75 16 12 H 0.08 1.41 6.62 -51.93 -0.34 1.07 16 13 C -0.11 -1.41 6.48 -24.60 -0.16 -1.57 16 14 C -0.14 -1.49 6.94 -24.91 -0.17 -1.66 16 15 C 0.04 0.53 6.90 -2.84 -0.02 0.51 16 16 N -0.51 -7.96 4.69 -232.98 -1.09 -9.05 16 17 C 0.02 0.34 9.13 60.07 0.55 0.89 16 18 C 0.07 1.13 6.66 -2.19 -0.01 1.11 16 19 C 0.18 3.16 3.27 -66.31 -0.22 2.94 16 20 H 0.07 1.27 7.39 -51.93 -0.38 0.88 16 21 N -0.71 -16.31 5.13 -51.86 -0.27 -16.58 16 22 C -0.24 -6.22 9.96 -15.06 -0.15 -6.37 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -26.75 13.06 55.49 0.72 -26.02 16 26 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 C 0.06 0.79 10.92 -17.37 -0.19 0.60 16 31 N -0.30 -4.47 12.58 30.63 0.39 -4.08 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.08 1.22 7.88 -51.93 -0.41 0.81 16 37 H 0.07 0.91 7.41 -51.93 -0.38 0.52 16 38 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.62 7.58 -51.93 -0.39 0.23 16 44 H 0.03 0.45 8.09 -51.93 -0.42 0.03 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.46 6.66 -51.93 -0.35 1.11 16 49 H 0.38 9.69 7.56 -40.82 -0.31 9.38 16 50 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.18 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -33.36 411.67 -9.25 -42.61 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -8.42 Total: 11.34 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.02 Total: 6.29 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.08 Total: -71.61 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.36 -9.25 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086971041.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.622 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds