Wall clock time and date at job start Wed Apr 1 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34949 * 126.03506 * 2 1 4 4 C 1.35318 * 107.74603 * 180.15056 * 3 2 1 5 5 C 1.50699 * 126.04025 * 179.87554 * 4 3 2 6 6 H 1.09000 * 110.30197 * 0.43449 * 5 4 3 7 7 C 1.54390 * 110.34008 * 238.26192 * 5 4 3 8 8 N 1.48150 * 104.61154 * 217.26084 * 7 5 4 9 9 C 1.34777 * 127.83344 * 219.58094 * 8 7 5 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72939 * 9 8 7 12 12 H 1.09003 * 110.33577 * 321.07690 * 11 9 8 13 13 C 1.54900 * 110.37605 * 83.45240 * 11 9 8 14 14 C 1.55141 * 101.65787 * 155.90043 * 13 11 9 15 15 C 1.54317 * 103.01686 * 324.34443 * 14 13 11 16 16 N 1.47443 * 107.23286 * 22.28383 * 15 14 13 17 17 C 1.46905 * 111.00265 * 123.25733 * 16 15 14 18 18 C 1.48140 * 104.32507 * 39.84955 * 8 7 5 19 19 C 1.54285 * 110.34312 * 122.72117 * 5 4 3 20 20 H 1.09000 * 110.34189 * 359.89696 * 19 5 4 21 21 N 1.46498 * 110.34302 * 237.73839 * 19 5 4 22 22 C 1.36937 * 119.99715 * 154.99738 * 21 19 5 23 23 H 1.08002 * 119.99987 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99755 * 180.02562 * 22 21 19 25 25 N 1.31608 * 120.00197 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99651 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47349 * 90.00186 * 26 24 22 28 28 H 1.48505 * 109.47185 * 209.99975 * 26 24 22 29 29 H 1.48493 * 109.47513 * 330.00117 * 26 24 22 30 30 C 1.39874 * 107.91663 * 359.61123 * 4 3 2 31 31 N 1.30830 * 108.20457 * 0.24049 * 30 4 3 32 32 H 1.09000 * 109.46837 * 270.30627 * 1 2 3 33 33 H 1.08998 * 109.47281 * 30.30389 * 1 2 3 34 34 H 1.08994 * 109.46728 * 150.31174 * 1 2 3 35 35 H 1.08000 * 126.12938 * 0.02562 * 3 2 1 36 36 H 1.08997 * 110.41050 * 98.48116 * 7 5 4 37 37 H 1.08997 * 110.51083 * 336.09358 * 7 5 4 38 38 H 1.09008 * 110.98940 * 273.99241 * 13 11 9 39 39 H 1.08995 * 110.99274 * 37.80297 * 13 11 9 40 40 H 1.08999 * 110.70434 * 205.96652 * 14 13 11 41 41 H 1.08996 * 110.85890 * 82.79605 * 14 13 11 42 42 H 1.08998 * 109.89373 * 262.88244 * 15 14 13 43 43 H 1.08998 * 109.89054 * 141.68531 * 15 14 13 44 44 H 1.09001 * 109.46935 * 299.15715 * 17 16 15 45 45 H 1.08995 * 109.46980 * 59.15628 * 17 16 15 46 46 H 1.08995 * 109.47231 * 179.15679 * 17 16 15 47 47 H 1.09001 * 110.41247 * 78.93475 * 18 8 7 48 48 H 1.09004 * 110.40474 * 201.36625 * 18 8 7 49 49 H 0.96999 * 119.99900 * 335.00678 * 21 19 5 50 50 H 0.97006 * 120.00240 * 179.97438 * 25 24 22 51 51 H 1.08005 * 125.89488 * 180.22245 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0034 5 6 4.7680 1.5454 -0.0073 6 1 4.4791 2.5964 0.0007 7 6 5.6446 1.2391 -1.2407 8 7 7.0369 1.3590 -0.7489 9 6 8.0950 1.8987 -1.3857 10 8 7.9616 2.3611 -2.4990 11 6 9.4424 1.9338 -0.7117 12 1 9.3297 2.1592 0.3488 13 6 10.1767 0.5834 -0.9034 14 6 11.6601 1.0072 -0.7399 15 6 11.6941 2.4091 -1.3841 16 7 10.3166 2.9343 -1.3604 17 6 10.2561 4.2219 -0.6559 18 6 7.0036 0.7451 0.5989 19 6 5.6631 1.2235 1.2074 20 1 5.2164 0.4311 1.8079 21 7 5.8681 2.4242 2.0214 22 6 6.1662 2.3061 3.3527 23 1 6.2507 1.3279 3.8025 24 6 6.3599 3.4438 4.1241 25 7 6.2565 4.6359 3.5762 26 14 6.7673 3.2827 5.9400 27 1 8.2408 3.2167 6.1128 28 1 6.2352 4.4595 6.6731 29 1 6.1500 2.0439 6.4779 30 6 3.5347 -0.7321 0.0035 31 7 2.2892 -1.1327 0.0055 32 1 -0.3633 0.0055 1.0277 33 1 -0.3634 0.8872 -0.5185 34 1 -0.3632 -0.8927 -0.5090 35 1 1.9281 2.1194 0.0004 36 1 5.4566 1.9662 -2.0307 37 1 5.4550 0.2285 -1.6025 38 1 9.8875 -0.1311 -0.1327 39 1 9.9939 0.1774 -1.8983 40 1 12.3179 0.3216 -1.2740 41 1 11.9346 1.0605 0.3136 42 1 12.0453 2.3358 -2.4133 43 1 12.3506 3.0644 -0.8117 44 1 10.5836 4.0878 0.3751 45 1 10.9082 4.9395 -1.1538 46 1 9.2316 4.5939 -0.6662 47 1 7.0223 -0.3421 0.5220 48 1 7.8422 1.0991 1.1986 49 1 5.7924 3.3028 1.6174 50 1 6.3914 5.4310 4.1153 51 1 4.4055 -1.3709 0.0063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086971041.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:48 Heat of formation + Delta-G solvation = 59.074414 kcal Electronic energy + Delta-G solvation = -31831.368681 eV Core-core repulsion = 27767.376311 eV Total energy + Delta-G solvation = -4063.992370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20662 -41.20232 -39.56782 -38.25492 -35.68331 -34.41576 -33.29369 -32.96217 -32.29608 -30.81139 -29.50164 -28.82269 -27.15184 -26.67170 -25.95746 -24.55111 -22.64800 -22.26373 -21.97720 -21.70310 -20.63875 -19.87763 -19.09027 -18.39487 -17.62387 -17.00840 -16.83614 -16.54672 -16.35421 -16.23312 -15.69879 -15.39952 -15.30025 -15.03858 -14.92389 -14.65558 -14.42250 -14.29943 -13.82770 -13.70356 -13.58213 -13.56674 -13.30462 -13.16284 -13.04866 -12.98854 -12.81512 -12.54774 -12.47698 -12.29813 -12.21612 -12.16401 -12.08422 -11.91563 -11.71483 -11.64760 -11.35897 -11.00746 -10.71113 -10.28213 -9.71655 -9.33182 -9.29150 -8.81972 -7.89325 -5.17117 1.00620 1.49468 1.50430 1.58132 1.64211 1.75507 1.88846 2.02170 2.58913 3.03876 3.42296 3.49674 3.61143 3.65355 3.84534 3.91940 3.97177 4.01046 4.10576 4.15245 4.22365 4.36319 4.37960 4.40304 4.43087 4.47568 4.48668 4.57801 4.62244 4.72039 4.73579 4.77714 4.79870 4.86599 4.88664 4.90955 4.93790 4.96674 5.04477 5.10515 5.21462 5.29198 5.36159 5.49991 5.61485 5.77816 5.85872 6.04303 6.18085 6.31384 6.67432 6.79750 7.29440 7.38408 8.13238 8.36265 9.33744 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007190 B = 0.004314 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3893.207935 B = 6489.140691 C = 9375.808719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.058 3.942 4 C -0.228 4.228 5 C -0.015 4.015 6 H 0.067 0.933 7 C 0.123 3.877 8 N -0.615 5.615 9 C 0.540 3.460 10 O -0.573 6.573 11 C 0.058 3.942 12 H 0.068 0.932 13 C -0.108 4.108 14 C -0.131 4.131 15 C 0.040 3.960 16 N -0.535 5.535 17 C 0.029 3.971 18 C 0.082 3.918 19 C 0.174 3.826 20 H 0.072 0.928 21 N -0.724 5.724 22 C -0.229 4.229 23 H 0.081 0.919 24 C -0.071 4.071 25 N -0.968 5.968 26 Si 0.962 3.038 27 H -0.289 1.289 28 H -0.303 1.303 29 H -0.269 1.269 30 C 0.055 3.945 31 N -0.328 5.328 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.190 0.810 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.087 0.913 46 H 0.039 0.961 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.369 0.631 50 H 0.247 0.753 51 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 -11.032 -8.717 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.088 4.088 4 C -0.240 4.240 5 C -0.036 4.036 6 H 0.085 0.915 7 C 0.000 4.000 8 N -0.348 5.348 9 C 0.329 3.671 10 O -0.453 6.453 11 C -0.054 4.054 12 H 0.086 0.914 13 C -0.147 4.147 14 C -0.169 4.169 15 C -0.087 4.087 16 N -0.260 5.260 17 C -0.120 4.120 18 C -0.043 4.043 19 C 0.064 3.936 20 H 0.090 0.910 21 N -0.362 5.362 22 C -0.361 4.361 23 H 0.099 0.901 24 C -0.263 4.263 25 N -0.619 5.619 26 Si 0.792 3.208 27 H -0.216 1.216 28 H -0.230 1.230 29 H -0.194 1.194 30 C -0.131 4.131 31 N -0.150 5.150 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.207 0.793 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.106 0.894 46 H 0.058 0.942 47 H 0.116 0.884 48 H 0.087 0.913 49 H 0.201 0.799 50 H 0.056 0.944 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.101 -11.730 -9.680 15.249 hybrid contribution 0.703 1.695 1.870 2.620 sum -0.398 -10.035 -7.810 12.723 Atomic orbital electron populations 1.22146 0.72212 1.05878 1.04287 1.48714 1.07784 1.03227 1.56656 1.22680 0.90909 0.94264 1.00995 1.19764 0.93623 0.93786 1.16836 1.20405 0.91410 0.97697 0.94118 0.91498 1.22328 0.79717 1.02027 0.95921 1.48977 1.08647 1.58554 1.18634 1.20362 0.85312 0.76306 0.85153 1.90615 1.85237 1.48102 1.21304 1.22469 0.91125 0.95496 0.96301 0.91382 1.22636 0.95128 0.93597 1.03298 1.22782 0.95698 0.96447 1.02005 1.22958 0.87866 0.95925 1.01965 1.63052 1.08107 1.02770 1.52045 1.22458 1.01583 0.91640 0.96299 1.23514 1.01009 0.98012 0.81812 1.21458 0.91963 0.89712 0.90509 0.91006 1.42620 1.83786 1.03397 1.06408 1.19604 1.37443 0.92685 0.86399 0.90129 1.25411 1.04086 0.95189 1.01618 1.69817 1.58614 0.97191 1.36298 0.85308 0.77582 0.76662 0.81238 1.21627 1.23006 1.19414 1.23982 0.95465 0.94502 0.99118 1.77236 1.02224 1.09561 1.25995 0.90174 0.87124 0.88712 0.79335 0.91991 0.89186 0.88439 0.90682 0.87939 0.90379 0.89815 0.91298 0.95095 0.89446 0.94172 0.88445 0.91318 0.79891 0.94372 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 11.47 127.77 1.47 2.80 16 2 N -0.38 -9.09 4.01 -369.56 -1.48 -10.57 16 3 C 0.06 1.47 11.39 83.54 0.95 2.42 16 4 C -0.23 -6.29 4.72 -20.14 -0.10 -6.38 16 5 C -0.01 -0.46 3.23 -10.63 -0.03 -0.49 16 6 H 0.07 2.36 7.66 -2.39 -0.02 2.34 16 7 C 0.12 3.67 6.55 86.53 0.57 4.24 16 8 N -0.61 -20.03 3.31 -807.15 -2.67 -22.70 16 9 C 0.54 19.69 7.20 87.66 0.63 20.32 16 10 O -0.57 -24.99 16.86 -3.04 -0.05 -25.04 16 11 C 0.06 1.80 2.27 44.64 0.10 1.90 16 12 H 0.07 2.33 6.62 -2.39 -0.02 2.31 16 13 C -0.11 -2.47 6.48 31.98 0.21 -2.27 16 14 C -0.13 -2.42 6.94 31.77 0.22 -2.20 16 15 C 0.04 0.89 6.90 86.65 0.60 1.49 16 16 N -0.54 -16.55 4.69 -891.01 -4.18 -20.73 16 17 C 0.03 0.89 9.13 127.69 1.17 2.05 16 18 C 0.08 2.48 6.66 86.68 0.58 3.06 16 19 C 0.17 6.07 3.27 46.04 0.15 6.22 16 20 H 0.07 2.51 7.39 -2.39 -0.02 2.49 16 21 N -0.72 -33.47 5.13 -317.99 -1.63 -35.10 16 22 C -0.23 -11.73 9.96 84.03 0.84 -10.89 16 23 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 24 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 25 N -0.97 -57.36 13.06 21.65 0.28 -57.08 16 26 Si 0.96 44.32 29.55 68.60 2.03 46.35 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 30 C 0.05 1.42 10.92 85.24 0.93 2.35 16 31 N -0.33 -9.07 12.58 -57.02 -0.72 -9.79 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.19 3.91 8.06 -2.91 -0.02 3.89 16 36 H 0.06 2.04 7.88 -2.39 -0.02 2.02 16 37 H 0.09 2.29 7.41 -2.39 -0.02 2.28 16 38 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.37 7.58 -2.39 -0.02 1.35 16 44 H 0.03 0.93 8.09 -2.39 -0.02 0.91 16 45 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.07 2.34 6.66 -2.38 -0.02 2.32 16 49 H 0.37 19.26 7.56 -92.71 -0.70 18.56 16 50 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 51 H 0.20 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -73.78 411.67 0.54 -73.24 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: 0.22 Total: 40.19 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 8.74 Total: 21.23 kcal Atomic # 7 Polarization: -145.57 SS G_CDS: -10.40 Total: -155.98 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -73.78 0.54 -73.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086971041.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.319 kcal (2) G-P(sol) polarization free energy of solvation -73.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds