Wall clock time and date at job start Wed Apr 1 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34950 * 126.03795 * 2 1 4 4 C 1.35318 * 107.74448 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.03846 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.64572 * 356.85009 * 5 4 3 7 7 C 1.54331 * 110.87179 * 233.60515 * 5 4 3 8 8 N 1.47022 * 107.27324 * 219.37135 * 7 5 4 9 9 C 1.34774 * 125.64450 * 178.98375 * 8 7 5 10 10 O 1.21275 * 120.00191 * 0.02562 * 9 8 7 11 11 C 1.50711 * 119.99585 * 180.02562 * 9 8 7 12 12 N 1.46901 * 109.46815 * 180.02562 * 11 9 8 13 13 C 1.48534 * 111.00022 * 52.60263 * 12 11 9 14 14 C 1.54941 * 103.22245 * 159.71622 * 13 12 11 15 15 C 1.54589 * 102.92424 * 322.58843 * 14 13 12 16 16 C 1.47906 * 110.99510 * 169.99955 * 12 11 9 17 17 C 1.47425 * 108.70063 * 358.94282 * 8 7 5 18 18 C 1.54904 * 104.83734 * 24.12715 * 17 8 7 19 19 H 1.09000 * 111.03568 * 81.07630 * 18 17 8 20 20 N 1.46496 * 111.00766 * 204.91958 * 18 17 8 21 21 C 1.36945 * 119.99718 * 267.19494 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 C 1.39872 * 107.92082 * 0.25733 * 4 3 2 30 30 N 1.30844 * 108.20310 * 359.56049 * 29 4 3 31 31 H 1.09004 * 109.46803 * 90.00179 * 1 2 3 32 32 H 1.08997 * 109.47503 * 210.00171 * 1 2 3 33 33 H 1.08996 * 109.47227 * 330.00638 * 1 2 3 34 34 H 1.07997 * 126.12915 * 359.95588 * 3 2 1 35 35 H 1.09002 * 109.87899 * 338.79430 * 7 5 4 36 36 H 1.08998 * 109.88358 * 99.79895 * 7 5 4 37 37 H 1.09002 * 109.47085 * 300.00497 * 11 9 8 38 38 H 1.09002 * 109.46642 * 60.00149 * 11 9 8 39 39 H 1.08996 * 110.66704 * 278.15456 * 13 12 11 40 40 H 1.08998 * 110.66553 * 41.28636 * 13 12 11 41 41 H 1.08997 * 110.71990 * 204.22524 * 14 13 12 42 42 H 1.09005 * 110.87417 * 81.01995 * 14 13 12 43 43 H 1.08998 * 110.30931 * 263.04077 * 15 14 13 44 44 H 1.09001 * 110.30678 * 140.87264 * 15 14 13 45 45 H 1.08995 * 109.92007 * 333.51022 * 16 12 11 46 46 H 1.09001 * 109.91519 * 94.80534 * 16 12 11 47 47 H 1.08998 * 110.36657 * 265.28712 * 17 8 7 48 48 H 1.09000 * 110.36657 * 142.96590 * 17 8 7 49 49 H 0.96996 * 120.00499 * 87.19225 * 20 18 17 50 50 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 51 51 H 1.07999 * 125.89811 * 179.73274 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 4.7680 1.5452 0.0013 6 1 4.4864 2.5967 -0.0547 7 6 5.7142 1.1709 -1.1590 8 7 7.0895 1.2601 -0.6470 9 6 8.2079 0.9904 -1.3489 10 8 8.1273 0.6402 -2.5072 11 6 9.5589 1.1239 -0.6943 12 7 10.6082 0.7769 -1.6620 13 6 10.4522 1.5542 -2.9180 14 6 11.8595 1.4746 -3.5613 15 6 12.8033 1.5624 -2.3401 16 6 11.9475 1.1222 -1.1379 17 6 7.0424 1.6946 0.7610 18 6 5.6365 1.2757 1.2586 19 1 5.6156 0.2199 1.5288 20 7 5.2067 2.1112 2.3825 21 6 5.4516 1.7081 3.6682 22 1 5.9613 0.7742 3.8534 23 6 5.0449 2.5000 4.7332 24 7 4.4233 3.6380 4.5074 25 14 5.3784 1.9499 6.4869 26 1 4.2357 1.1379 6.9768 27 1 6.6176 1.1324 6.5221 28 1 5.5470 3.1421 7.3560 29 6 3.5347 -0.7322 -0.0050 30 7 2.2891 -1.1329 0.0007 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.9282 2.1193 -0.0007 35 1 5.5078 0.1537 -1.4921 36 1 5.5786 1.8665 -1.9871 37 1 9.7000 2.1513 -0.3585 38 1 9.6161 0.4509 0.1613 39 1 9.7065 1.0931 -3.5656 40 1 10.1869 2.5886 -2.6998 41 1 12.0230 2.3146 -4.2364 42 1 11.9940 0.5284 -4.0855 43 1 13.1500 2.5865 -2.2027 44 1 13.6509 0.8891 -2.4679 45 1 11.8665 1.9390 -0.4208 46 1 12.3962 0.2501 -0.6622 47 1 7.1621 2.7759 0.8286 48 1 7.8157 1.1896 1.3399 49 1 4.7486 2.9498 2.2162 50 1 4.1387 4.1912 5.2517 51 1 4.4054 -1.3711 -0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087009392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:06 Heat of formation + Delta-G solvation = 58.541891 kcal Electronic energy + Delta-G solvation = -31034.320907 eV Core-core repulsion = 26970.305445 eV Total energy + Delta-G solvation = -4064.015462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.19346 -41.20457 -39.63351 -38.36215 -35.80910 -34.48930 -33.47955 -33.06746 -32.21662 -30.10189 -29.72590 -28.98294 -27.92681 -26.72169 -25.69521 -23.89891 -22.49656 -22.24054 -21.74637 -21.64118 -20.66906 -20.18797 -19.17866 -18.15165 -17.62696 -17.34933 -16.99957 -16.59516 -16.33035 -16.22607 -16.05832 -15.45484 -15.33551 -15.13482 -14.83688 -14.67586 -14.34976 -14.22476 -13.92970 -13.84730 -13.60203 -13.49665 -13.31324 -13.23164 -13.12215 -13.01501 -12.84667 -12.60343 -12.51807 -12.32704 -12.19932 -12.13348 -11.87125 -11.79234 -11.73006 -11.43637 -11.37919 -10.99713 -10.63689 -10.28510 -9.65292 -9.39138 -9.28098 -8.88797 -7.90153 -5.17455 1.01483 1.50429 1.52142 1.58939 1.60865 1.74693 1.82421 1.97324 2.59279 3.05476 3.40957 3.42603 3.60815 3.76818 3.88534 3.88988 4.03246 4.06164 4.09623 4.14873 4.26241 4.29244 4.35752 4.37288 4.39077 4.45110 4.46805 4.55768 4.61649 4.66819 4.69903 4.75972 4.80638 4.86081 4.96059 5.00172 5.00942 5.07604 5.13122 5.20659 5.22861 5.31754 5.34465 5.46608 5.60120 5.74542 5.88931 5.96422 6.20337 6.31232 6.55148 6.78077 7.17939 7.40057 8.11672 8.36609 9.32366 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007984 B = 0.003299 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.116473 B = 8486.125931 C =11417.158052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.063 3.937 4 C -0.225 4.225 5 C -0.015 4.015 6 H 0.090 0.910 7 C 0.128 3.872 8 N -0.610 5.610 9 C 0.525 3.475 10 O -0.565 6.565 11 C 0.036 3.964 12 N -0.520 5.520 13 C 0.032 3.968 14 C -0.122 4.122 15 C -0.126 4.126 16 C 0.030 3.970 17 C 0.084 3.916 18 C 0.181 3.819 19 H 0.060 0.940 20 N -0.713 5.713 21 C -0.233 4.233 22 H 0.075 0.925 23 C -0.065 4.065 24 N -0.963 5.963 25 Si 0.959 3.041 26 H -0.295 1.295 27 H -0.269 1.269 28 H -0.298 1.298 29 C 0.048 3.952 30 N -0.332 5.332 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.196 0.804 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.378 0.622 50 H 0.249 0.751 51 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 -2.399 -13.432 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.084 4.084 4 C -0.236 4.236 5 C -0.036 4.036 6 H 0.109 0.891 7 C 0.005 3.995 8 N -0.344 5.344 9 C 0.314 3.686 10 O -0.444 6.444 11 C -0.095 4.095 12 N -0.245 5.245 13 C -0.096 4.096 14 C -0.160 4.160 15 C -0.164 4.164 16 C -0.097 4.097 17 C -0.042 4.042 18 C 0.070 3.930 19 H 0.078 0.922 20 N -0.352 5.352 21 C -0.365 4.365 22 H 0.093 0.907 23 C -0.257 4.257 24 N -0.613 5.613 25 Si 0.789 3.211 26 H -0.223 1.223 27 H -0.194 1.194 28 H -0.225 1.225 29 C -0.138 4.138 30 N -0.154 5.154 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.212 0.788 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.211 0.789 50 H 0.058 0.942 51 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.500 -4.279 -13.993 15.309 hybrid contribution 0.202 1.722 1.487 2.284 sum 4.701 -2.557 -12.506 13.603 Atomic orbital electron populations 1.22142 0.72234 1.05532 1.04587 1.48708 1.07800 1.03286 1.56623 1.22702 0.90682 0.94310 1.00677 1.19737 0.94117 0.93349 1.16414 1.20570 0.90862 0.98430 0.93753 0.89132 1.21856 0.80001 1.01560 0.96062 1.48499 1.05841 1.66491 1.13578 1.20527 0.85716 0.76490 0.85847 1.90607 1.87074 1.48704 1.18047 1.22193 0.88546 1.02315 0.96452 1.64670 1.01659 1.54204 1.03955 1.23400 0.98968 0.95026 0.92189 1.22508 0.93144 1.02658 0.97684 1.22403 0.98225 1.02341 0.93432 1.23036 0.88473 1.00595 0.97635 1.23232 1.01454 0.99833 0.79669 1.21418 0.90338 0.94639 0.86594 0.92164 1.42279 1.68573 1.23615 1.00688 1.19541 1.29732 1.03132 0.84116 0.90737 1.25341 1.02009 0.97428 1.00961 1.69777 1.46467 1.14261 1.30818 0.85353 0.77844 0.76611 0.81242 1.22314 1.19383 1.22458 1.23831 0.95179 0.95123 0.99641 1.77213 1.02208 1.09804 1.26216 0.89056 0.89408 0.87545 0.78756 0.91674 0.91414 0.90721 0.86685 0.89755 0.95035 0.89906 0.91069 0.90414 0.89733 0.92991 0.89519 0.91502 0.90296 0.78916 0.94179 0.79928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 11.47 127.77 1.47 3.11 16 2 N -0.38 -10.50 4.01 -369.56 -1.48 -11.98 16 3 C 0.06 1.74 11.40 83.54 0.95 2.69 16 4 C -0.22 -6.81 4.96 -20.14 -0.10 -6.91 16 5 C -0.02 -0.45 3.00 -10.35 -0.03 -0.48 16 6 H 0.09 2.65 8.00 -2.39 -0.02 2.63 16 7 C 0.13 3.66 6.43 86.73 0.56 4.21 16 8 N -0.61 -17.82 3.33 -811.79 -2.70 -20.52 16 9 C 0.52 15.88 7.56 87.66 0.66 16.55 16 10 O -0.56 -20.19 13.85 -3.01 -0.04 -20.24 16 11 C 0.04 0.89 4.52 85.56 0.39 1.28 16 12 N -0.52 -12.85 5.26 -887.54 -4.67 -17.52 16 13 C 0.03 0.78 5.30 86.65 0.46 1.24 16 14 C -0.12 -2.22 7.06 31.80 0.22 -2.00 16 15 C -0.13 -1.93 6.93 31.47 0.22 -1.71 16 16 C 0.03 0.56 6.70 86.44 0.58 1.13 16 17 C 0.08 2.55 6.38 86.85 0.55 3.11 16 18 C 0.18 6.32 3.14 46.38 0.15 6.46 16 19 H 0.06 2.24 7.65 -2.39 -0.02 2.22 16 20 N -0.71 -31.65 5.24 -316.38 -1.66 -33.31 16 21 C -0.23 -11.80 9.96 84.03 0.84 -10.97 16 22 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 23 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 24 N -0.96 -54.83 13.06 21.65 0.28 -54.55 16 25 Si 0.96 43.90 29.55 68.60 2.03 45.93 16 26 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 29 C 0.05 1.50 10.75 85.24 0.92 2.41 16 30 N -0.33 -10.84 12.58 -57.02 -0.72 -11.55 16 31 H 0.09 1.20 8.14 -2.38 -0.02 1.19 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.20 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.06 1.92 7.23 -2.39 -0.02 1.90 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.69 7.81 -2.39 -0.02 1.67 16 38 H 0.12 2.61 7.85 -2.39 -0.02 2.59 16 39 H 0.08 2.56 5.97 -2.39 -0.01 2.54 16 40 H 0.03 0.78 8.02 -2.39 -0.02 0.76 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.05 0.90 7.57 -2.39 -0.02 0.88 16 46 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.08 2.28 7.48 -2.39 -0.02 2.27 16 49 H 0.38 18.03 7.76 -92.71 -0.72 17.31 16 50 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 51 H 0.18 5.21 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -68.03 408.25 -0.46 -68.49 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: 0.20 Total: 38.11 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 8.29 Total: 17.15 kcal Atomic # 7 Polarization: -138.49 SS G_CDS: -10.95 Total: -149.43 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.04 Total: -20.24 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -68.03 -0.46 -68.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087009392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.030 kcal (2) G-P(sol) polarization free energy of solvation -68.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds