Wall clock time and date at job start Wed Apr 1 2020 05:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46511 * 109.46955 * 2 1 4 4 N 1.28515 * 124.44107 * 270.02198 * 3 2 1 5 5 C 1.31131 * 109.05722 * 179.69328 * 4 3 2 6 6 C 1.40928 * 105.77565 * 0.43274 * 5 4 3 7 7 C 1.47796 * 127.23866 * 179.84121 * 6 5 4 8 8 O 1.21559 * 119.99875 * 359.70530 * 7 6 5 9 9 N 1.34779 * 120.00204 * 179.70939 * 7 6 5 10 10 C 1.46502 * 120.00069 * 179.97438 * 9 7 6 11 11 H 1.08998 * 113.22436 * 22.19100 * 10 9 7 12 12 C 1.49996 * 114.12422 * 249.14139 * 10 9 7 13 13 H 1.09002 * 112.50905 * 170.16258 * 12 10 9 14 14 C 1.51204 * 126.17494 * 27.76813 * 12 10 9 15 15 C 1.54094 * 106.19811 * 198.57232 * 14 12 10 16 16 C 1.52500 * 112.66947 * 55.43500 * 15 14 12 17 17 N 1.48400 * 111.87262 * 313.21878 * 16 15 14 18 18 C 1.36942 * 123.16680 * 231.83742 * 17 16 15 19 19 H 1.07993 * 120.00195 * 209.27122 * 18 17 16 20 20 C 1.38817 * 119.99588 * 29.27092 * 18 17 16 21 21 N 1.31621 * 120.00400 * 17.12451 * 20 18 17 22 22 Si 1.86803 * 119.99668 * 197.12427 * 20 18 17 23 23 H 1.48500 * 109.46919 * 90.00357 * 22 20 18 24 24 H 1.48504 * 109.46793 * 210.00193 * 22 20 18 25 25 H 1.48499 * 109.47254 * 329.99978 * 22 20 18 26 26 C 1.45380 * 113.67007 * 51.83664 * 17 16 15 27 27 H 1.08997 * 111.70851 * 59.54612 * 26 17 16 28 28 C 1.49968 * 126.66950 * 204.05081 * 26 17 16 29 29 C 1.52998 * 114.08315 * 253.25834 * 28 26 17 30 30 C 1.52994 * 114.08728 * 25.68556 * 28 26 17 31 31 N 1.28586 * 124.44309 * 90.00031 * 3 2 1 32 32 H 1.09006 * 109.47154 * 60.00069 * 1 2 3 33 33 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47456 * 300.00286 * 1 2 3 35 35 H 1.08995 * 109.47153 * 240.00059 * 2 1 3 36 36 H 1.08995 * 109.47297 * 119.99454 * 2 1 3 37 37 H 1.08000 * 127.11499 * 180.28854 * 5 4 3 38 38 H 0.96996 * 119.99686 * 359.97438 * 9 7 6 39 39 H 1.08998 * 110.10350 * 317.74062 * 14 12 10 40 40 H 1.09001 * 110.10429 * 79.40422 * 14 12 10 41 41 H 1.09002 * 108.84432 * 176.25789 * 15 14 12 42 42 H 1.09001 * 108.83990 * 294.61853 * 15 14 12 43 43 H 1.09010 * 108.99761 * 73.83213 * 16 15 14 44 44 H 1.08998 * 109.00259 * 192.59602 * 16 15 14 45 45 H 0.96990 * 120.00246 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.47076 * 60.00571 * 29 28 26 47 47 H 1.08998 * 109.47311 * 180.02562 * 29 28 26 48 48 H 1.09004 * 109.47522 * 300.00428 * 29 28 26 49 49 H 1.08998 * 109.47513 * 54.24614 * 30 28 26 50 50 H 1.09000 * 109.47362 * 174.25323 * 30 28 26 51 51 H 1.09001 * 109.46869 * 294.24651 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2602 2.0667 -1.0599 5 6 2.6754 3.2609 -0.7120 6 6 2.6848 3.2679 0.6972 7 6 3.0788 4.3831 1.5835 8 8 3.4505 5.4371 1.1055 9 7 3.0260 4.2314 2.9217 10 6 3.4171 5.3366 3.8002 11 1 3.3600 6.3115 3.3159 12 6 4.6898 5.0973 4.5571 13 1 5.0469 5.9923 5.0666 14 6 5.8383 4.2180 4.1165 15 6 6.6617 3.9191 5.3843 16 6 5.8226 3.3016 6.4980 17 7 4.5474 4.0332 6.7000 18 6 4.1312 4.4901 7.9220 19 1 3.0761 4.5765 8.1355 20 6 5.0657 4.8421 8.8863 21 7 6.3163 5.0634 8.5411 22 14 4.5480 5.0017 10.6741 23 1 4.7073 3.6913 11.3544 24 1 5.3990 6.0156 11.3472 25 1 3.1262 5.4251 10.7419 26 6 3.7815 4.2193 5.4784 27 1 3.5207 3.2668 5.0170 28 6 2.7637 5.2885 5.2135 29 6 1.3178 4.7884 5.2161 30 6 2.9658 6.5610 6.0384 31 7 2.2607 2.0670 1.0604 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8900 37 1 2.9550 4.0708 -1.3695 38 1 2.7291 3.3904 3.3031 39 1 5.4575 3.2902 3.6898 40 1 6.4533 4.7432 3.3857 41 1 7.4667 3.2307 5.1271 42 1 7.0989 4.8492 5.7475 43 1 5.6007 2.2654 6.2422 44 1 6.3942 3.3218 7.4259 45 1 6.9691 5.3097 9.2148 46 1 1.0842 4.3573 6.1896 47 1 0.6446 5.6222 5.0167 48 1 1.1943 4.0294 4.4436 49 1 3.9810 6.9306 5.8935 50 1 2.2533 7.3202 5.7158 51 1 2.8071 6.3390 7.0937 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087285044.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:54 Heat of formation + Delta-G solvation = 145.805205 kcal Electronic energy + Delta-G solvation = -32394.372640 eV Core-core repulsion = 28334.141199 eV Total energy + Delta-G solvation = -4060.231441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.82110 -41.08635 -38.68288 -35.25679 -35.12863 -33.47300 -32.88192 -32.43240 -30.71217 -30.17006 -29.23712 -26.94817 -25.98104 -25.46358 -24.58811 -23.59555 -22.31289 -21.77090 -20.74528 -20.39352 -19.02915 -18.33855 -17.68793 -17.18697 -16.76928 -16.61618 -15.48838 -15.25003 -14.79741 -14.60277 -14.55841 -14.16956 -13.98520 -13.71586 -13.68036 -13.30886 -13.13589 -12.69982 -12.65074 -12.50767 -12.38580 -12.10533 -11.91077 -11.88268 -11.50720 -11.26071 -11.18098 -11.12156 -10.95855 -10.85901 -10.64467 -10.59608 -10.41751 -10.23705 -10.19386 -10.00351 -9.81851 -9.63124 -9.47035 -9.20937 -8.86612 -8.58912 -8.37857 -6.52158 -5.74835 -3.17346 1.20353 1.80758 1.90356 3.16388 3.30222 3.37888 3.45531 3.46220 3.76146 4.35966 4.40651 4.49790 4.64905 4.76051 4.81451 4.92138 5.04281 5.10265 5.21221 5.27536 5.35006 5.48318 5.49674 5.56916 5.66006 5.80609 5.91114 5.95156 5.99358 6.05468 6.15685 6.16868 6.33057 6.38504 6.40129 6.44068 6.55402 6.60042 6.67707 6.71357 6.78646 6.85240 6.99806 7.08794 7.13611 7.31045 7.51040 7.61391 7.72032 7.80303 7.97423 8.27753 8.47161 9.18143 9.84782 10.51565 11.32080 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.002945 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.845330 B = 9504.323737 C = 9679.238903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.142 5.142 4 N -0.293 5.293 5 C 0.033 3.967 6 C -0.042 4.042 7 C 0.609 3.391 8 O -0.530 6.530 9 N -0.684 5.684 10 C 0.135 3.865 11 H 0.099 0.901 12 C -0.167 4.167 13 H 0.108 0.892 14 C -0.086 4.086 15 C -0.121 4.121 16 C 0.157 3.843 17 N -0.570 5.570 18 C -0.234 4.234 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.280 1.280 26 C 0.145 3.855 27 H 0.045 0.955 28 C -0.064 4.064 29 C -0.134 4.134 30 C -0.116 4.116 31 N -0.248 5.248 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.207 0.793 38 H 0.406 0.594 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.066 0.934 43 H -0.007 1.007 44 H 0.098 0.902 45 H 0.252 0.748 46 H 0.060 0.940 47 H 0.050 0.950 48 H 0.047 0.953 49 H 0.065 0.935 50 H 0.037 0.963 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.479 -8.024 -15.924 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.046 5.046 4 N -0.132 5.132 5 C -0.151 4.151 6 C -0.205 4.205 7 C 0.392 3.608 8 O -0.404 6.404 9 N -0.334 5.334 10 C 0.030 3.970 11 H 0.117 0.883 12 C -0.188 4.188 13 H 0.125 0.875 14 C -0.123 4.123 15 C -0.160 4.160 16 C 0.032 3.968 17 N -0.292 5.292 18 C -0.364 4.364 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.540 5.540 22 Si 0.726 3.274 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.037 3.963 27 H 0.063 0.937 28 C -0.065 4.065 29 C -0.192 4.192 30 C -0.173 4.173 31 N -0.096 5.096 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.224 0.776 38 H 0.243 0.757 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.011 0.989 44 H 0.116 0.884 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.056 0.944 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.522 -8.506 -16.068 20.523 hybrid contribution 0.105 0.403 1.075 1.153 sum -9.417 -8.103 -14.993 19.471 Atomic orbital electron populations 1.22193 0.92865 1.04076 1.03840 1.22105 0.96231 0.74150 1.06192 1.48260 1.43664 1.13466 0.99163 1.73986 1.18020 1.05519 1.15668 1.24835 1.01402 0.95097 0.93721 1.23162 1.08891 0.93547 0.94885 1.16578 0.77725 0.84863 0.81638 1.90803 1.47562 1.26711 1.75361 1.45550 1.65858 1.17317 1.04707 1.21661 0.96424 0.89671 0.89267 0.88278 1.23333 0.94313 1.01652 0.99505 0.87461 1.21049 0.96503 0.97679 0.97095 1.21804 0.97542 1.01512 0.95192 1.20894 0.87351 0.89874 0.98679 1.43834 1.18831 1.64125 1.02377 1.18961 0.91538 1.36944 0.88923 0.91625 1.24968 0.96287 0.99869 0.98542 1.69940 1.02364 1.49710 1.32012 0.86395 0.77789 0.77309 0.85907 1.21715 1.21931 1.20538 1.21774 0.92639 0.92834 0.89056 0.93743 1.21871 0.93711 0.97761 0.93152 1.21685 0.95646 1.00299 1.01529 1.21595 1.01269 0.93347 1.01094 1.74394 1.14875 1.04568 1.15787 0.91370 0.89406 0.91183 0.87103 0.86979 0.77602 0.75697 0.93754 0.94082 0.94296 0.91480 0.98869 0.88444 0.93813 0.92121 0.93091 0.93372 0.91655 0.94383 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.16 0.38 -0.48 16 2 C 0.13 0.80 7.24 -4.04 -0.03 0.77 16 3 N -0.14 -1.51 3.94 -10.61 -0.04 -1.55 16 4 N -0.29 -3.38 12.01 30.90 0.37 -3.01 16 5 C 0.03 0.40 12.04 -16.83 -0.20 0.19 16 6 C -0.04 -0.57 7.21 -82.68 -0.60 -1.16 16 7 C 0.61 9.47 7.83 -12.35 -0.10 9.37 16 8 O -0.53 -9.53 16.55 5.31 0.09 -9.44 16 9 N -0.68 -10.35 4.18 -58.62 -0.25 -10.59 16 10 C 0.14 2.26 3.98 -71.83 -0.29 1.97 16 11 H 0.10 1.72 7.45 -51.93 -0.39 1.33 16 12 C -0.17 -3.17 2.98 -95.83 -0.29 -3.45 16 13 H 0.11 2.30 5.88 -51.93 -0.31 2.00 16 14 C -0.09 -1.61 5.94 -27.07 -0.16 -1.78 16 15 C -0.12 -2.52 5.90 -26.42 -0.16 -2.68 16 16 C 0.16 3.63 5.75 -3.25 -0.02 3.61 16 17 N -0.57 -13.34 2.91 -169.41 -0.49 -13.83 16 18 C -0.23 -5.96 7.77 -15.05 -0.12 -6.07 16 19 H 0.07 1.67 7.28 -52.49 -0.38 1.28 16 20 C 0.00 0.05 5.07 -17.43 -0.09 -0.04 16 21 N -0.90 -24.55 11.16 55.49 0.62 -23.93 16 22 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.15 2.84 2.93 -72.13 -0.21 2.63 16 27 H 0.05 0.87 6.50 -51.93 -0.34 0.53 16 28 C -0.06 -1.09 1.39 -159.15 -0.22 -1.31 16 29 C -0.13 -2.01 9.22 37.16 0.34 -1.67 16 30 C -0.12 -2.10 8.41 37.15 0.31 -1.79 16 31 N -0.25 -3.12 11.84 33.42 0.40 -2.72 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.21 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.41 5.85 6.12 -40.82 -0.25 5.60 16 39 H 0.04 0.81 7.97 -51.93 -0.41 0.40 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 43 H -0.01 -0.15 8.14 -51.92 -0.42 -0.57 16 44 H 0.10 2.54 5.67 -51.93 -0.29 2.25 16 45 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.66 6.46 -51.93 -0.34 0.33 16 49 H 0.06 1.29 5.92 -51.93 -0.31 0.98 16 50 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.08 1.68 6.12 -51.93 -0.32 1.36 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -30.18 396.87 -7.75 -37.93 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.96 Total: 7.06 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.43 Total: -1.88 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.61 Total: -55.63 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.18 -7.75 -37.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285044.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.735 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds