Wall clock time and date at job start Wed Apr 1 2020 05:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46511 * 109.46955 * 2 1 4 4 N 1.28515 * 124.44107 * 270.02198 * 3 2 1 5 5 C 1.31131 * 109.05722 * 179.69328 * 4 3 2 6 6 C 1.40928 * 105.77565 * 0.43274 * 5 4 3 7 7 C 1.47796 * 127.23866 * 179.84121 * 6 5 4 8 8 O 1.21559 * 119.99875 * 359.70530 * 7 6 5 9 9 N 1.34779 * 120.00204 * 179.70939 * 7 6 5 10 10 C 1.46502 * 120.00069 * 179.97438 * 9 7 6 11 11 H 1.08998 * 113.22436 * 22.19100 * 10 9 7 12 12 C 1.49996 * 114.12422 * 249.14139 * 10 9 7 13 13 H 1.09002 * 112.50905 * 170.16258 * 12 10 9 14 14 C 1.51204 * 126.17494 * 27.76813 * 12 10 9 15 15 C 1.54094 * 106.19811 * 198.57232 * 14 12 10 16 16 C 1.52500 * 112.66947 * 55.43500 * 15 14 12 17 17 N 1.48400 * 111.87262 * 313.21878 * 16 15 14 18 18 C 1.36942 * 123.16680 * 231.83742 * 17 16 15 19 19 H 1.07993 * 120.00195 * 209.27122 * 18 17 16 20 20 C 1.38817 * 119.99588 * 29.27092 * 18 17 16 21 21 N 1.31621 * 120.00400 * 17.12451 * 20 18 17 22 22 Si 1.86803 * 119.99668 * 197.12427 * 20 18 17 23 23 H 1.48500 * 109.46919 * 90.00357 * 22 20 18 24 24 H 1.48504 * 109.46793 * 210.00193 * 22 20 18 25 25 H 1.48499 * 109.47254 * 329.99978 * 22 20 18 26 26 C 1.45380 * 113.67007 * 51.83664 * 17 16 15 27 27 H 1.08997 * 111.70851 * 59.54612 * 26 17 16 28 28 C 1.49968 * 126.66950 * 204.05081 * 26 17 16 29 29 C 1.52998 * 114.08315 * 253.25834 * 28 26 17 30 30 C 1.52994 * 114.08728 * 25.68556 * 28 26 17 31 31 N 1.28586 * 124.44309 * 90.00031 * 3 2 1 32 32 H 1.09006 * 109.47154 * 60.00069 * 1 2 3 33 33 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47456 * 300.00286 * 1 2 3 35 35 H 1.08995 * 109.47153 * 240.00059 * 2 1 3 36 36 H 1.08995 * 109.47297 * 119.99454 * 2 1 3 37 37 H 1.08000 * 127.11499 * 180.28854 * 5 4 3 38 38 H 0.96996 * 119.99686 * 359.97438 * 9 7 6 39 39 H 1.08998 * 110.10350 * 317.74062 * 14 12 10 40 40 H 1.09001 * 110.10429 * 79.40422 * 14 12 10 41 41 H 1.09002 * 108.84432 * 176.25789 * 15 14 12 42 42 H 1.09001 * 108.83990 * 294.61853 * 15 14 12 43 43 H 1.09010 * 108.99761 * 73.83213 * 16 15 14 44 44 H 1.08998 * 109.00259 * 192.59602 * 16 15 14 45 45 H 0.96990 * 120.00246 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.47076 * 60.00571 * 29 28 26 47 47 H 1.08998 * 109.47311 * 180.02562 * 29 28 26 48 48 H 1.09004 * 109.47522 * 300.00428 * 29 28 26 49 49 H 1.08998 * 109.47513 * 54.24614 * 30 28 26 50 50 H 1.09000 * 109.47362 * 174.25323 * 30 28 26 51 51 H 1.09001 * 109.46869 * 294.24651 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2602 2.0667 -1.0599 5 6 2.6754 3.2609 -0.7120 6 6 2.6848 3.2679 0.6972 7 6 3.0788 4.3831 1.5835 8 8 3.4505 5.4371 1.1055 9 7 3.0260 4.2314 2.9217 10 6 3.4171 5.3366 3.8002 11 1 3.3600 6.3115 3.3159 12 6 4.6898 5.0973 4.5571 13 1 5.0469 5.9923 5.0666 14 6 5.8383 4.2180 4.1165 15 6 6.6617 3.9191 5.3843 16 6 5.8226 3.3016 6.4980 17 7 4.5474 4.0332 6.7000 18 6 4.1312 4.4901 7.9220 19 1 3.0761 4.5765 8.1355 20 6 5.0657 4.8421 8.8863 21 7 6.3163 5.0634 8.5411 22 14 4.5480 5.0017 10.6741 23 1 4.7073 3.6913 11.3544 24 1 5.3990 6.0156 11.3472 25 1 3.1262 5.4251 10.7419 26 6 3.7815 4.2193 5.4784 27 1 3.5207 3.2668 5.0170 28 6 2.7637 5.2885 5.2135 29 6 1.3178 4.7884 5.2161 30 6 2.9658 6.5610 6.0384 31 7 2.2607 2.0670 1.0604 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8900 37 1 2.9550 4.0708 -1.3695 38 1 2.7291 3.3904 3.3031 39 1 5.4575 3.2902 3.6898 40 1 6.4533 4.7432 3.3857 41 1 7.4667 3.2307 5.1271 42 1 7.0989 4.8492 5.7475 43 1 5.6007 2.2654 6.2422 44 1 6.3942 3.3218 7.4259 45 1 6.9691 5.3097 9.2148 46 1 1.0842 4.3573 6.1896 47 1 0.6446 5.6222 5.0167 48 1 1.1943 4.0294 4.4436 49 1 3.9810 6.9306 5.8935 50 1 2.2533 7.3202 5.7158 51 1 2.8071 6.3390 7.0937 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087285044.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:53 Heat of formation + Delta-G solvation = 127.537562 kcal Electronic energy + Delta-G solvation = -32395.164784 eV Core-core repulsion = 28334.141199 eV Total energy + Delta-G solvation = -4061.023585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.70443 -42.55999 -39.98637 -36.92371 -35.79452 -34.76225 -34.55945 -33.51481 -32.09472 -31.38000 -30.69931 -28.37146 -27.54839 -26.83748 -25.68028 -24.66801 -23.94013 -22.55839 -22.27041 -21.70344 -20.57043 -19.75869 -18.74710 -18.47643 -18.13762 -17.63512 -16.94593 -16.43088 -16.06070 -15.95514 -15.67829 -15.49451 -15.38453 -15.24879 -15.00462 -14.73294 -14.28505 -14.10674 -13.94741 -13.69038 -13.49568 -13.16223 -13.08987 -12.97460 -12.91021 -12.76884 -12.68616 -12.52457 -12.34130 -12.25146 -12.07686 -12.05672 -12.04855 -11.72196 -11.51777 -11.47684 -11.35488 -11.18399 -10.81553 -10.61937 -10.50896 -10.22326 -9.93730 -8.42125 -7.74694 -5.17444 0.21213 0.89377 1.19986 1.48795 1.51941 1.57967 1.98525 2.15553 2.57232 2.87243 3.28367 3.42513 3.51051 3.71299 3.77156 3.93386 3.94031 3.95824 4.06360 4.16656 4.27108 4.32104 4.40999 4.52732 4.58589 4.59816 4.65667 4.70818 4.76796 4.77228 4.80346 4.90564 4.98541 5.00235 5.08056 5.12487 5.17476 5.17950 5.19902 5.24547 5.32835 5.40707 5.53266 5.57171 5.60792 5.66528 5.72567 5.80843 5.90660 6.40250 6.51341 7.01225 7.11745 7.20512 7.92611 8.57800 9.30576 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.002945 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.845330 B = 9504.323737 C = 9679.238903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.131 5.131 4 N -0.296 5.296 5 C 0.031 3.969 6 C -0.064 4.064 7 C 0.614 3.386 8 O -0.557 6.557 9 N -0.678 5.678 10 C 0.154 3.846 11 H 0.097 0.903 12 C -0.163 4.163 13 H 0.079 0.921 14 C -0.077 4.077 15 C -0.111 4.111 16 C 0.157 3.843 17 N -0.584 5.584 18 C -0.226 4.226 19 H 0.066 0.934 20 C -0.047 4.047 21 N -0.923 5.923 22 Si 0.949 3.051 23 H -0.293 1.293 24 H -0.302 1.302 25 H -0.270 1.270 26 C 0.138 3.862 27 H 0.056 0.944 28 C -0.060 4.060 29 C -0.128 4.128 30 C -0.110 4.110 31 N -0.252 5.252 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.223 0.777 38 H 0.412 0.588 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.035 0.965 43 H 0.002 0.998 44 H 0.066 0.934 45 H 0.244 0.756 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.065 0.935 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.467 -9.554 -17.675 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.000 4.000 3 N -0.036 5.036 4 N -0.136 5.136 5 C -0.152 4.152 6 C -0.226 4.226 7 C 0.399 3.601 8 O -0.434 6.434 9 N -0.328 5.328 10 C 0.048 3.952 11 H 0.115 0.885 12 C -0.184 4.184 13 H 0.097 0.903 14 C -0.115 4.115 15 C -0.150 4.150 16 C 0.032 3.968 17 N -0.306 5.306 18 C -0.357 4.357 19 H 0.084 0.916 20 C -0.243 4.243 21 N -0.569 5.569 22 Si 0.780 3.220 23 H -0.221 1.221 24 H -0.229 1.229 25 H -0.194 1.194 26 C 0.030 3.970 27 H 0.073 0.927 28 C -0.061 4.061 29 C -0.185 4.185 30 C -0.167 4.167 31 N -0.101 5.101 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.074 0.926 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.240 0.760 38 H 0.250 0.750 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.542 -10.055 -17.835 23.503 hybrid contribution 0.682 0.763 1.549 1.857 sum -10.860 -9.292 -16.285 21.668 Atomic orbital electron populations 1.22169 0.91928 1.05558 1.02661 1.22646 0.96986 0.72220 1.08098 1.48822 1.41976 1.14359 0.98477 1.74006 1.18173 1.05453 1.15942 1.25149 1.00978 0.95719 0.93374 1.22860 1.10931 0.93620 0.95159 1.16745 0.76841 0.84971 0.81571 1.90788 1.48784 1.28005 1.75789 1.45418 1.65828 1.16994 1.04578 1.21332 0.94527 0.90197 0.89107 0.88487 1.23198 0.95007 1.00344 0.99886 0.90311 1.20957 0.96247 0.98172 0.96079 1.21651 0.97851 1.00176 0.95342 1.20804 0.87388 0.90573 0.97997 1.43995 1.19340 1.64135 1.03115 1.19140 0.91433 1.35292 0.89790 0.91612 1.25547 0.96472 1.00776 1.01477 1.70090 1.03085 1.51441 1.32315 0.85529 0.77662 0.76569 0.82287 1.22067 1.22907 1.19449 1.22006 0.93669 0.93899 0.87398 0.92687 1.21831 0.94891 0.96398 0.92982 1.21633 0.93941 1.01260 1.01676 1.21485 1.00702 0.94669 0.99889 1.74348 1.14815 1.04372 1.16595 0.92219 0.86606 0.92582 0.84894 0.85473 0.76038 0.75032 0.92556 0.93475 0.92478 0.94568 0.97979 0.91631 0.94679 0.92823 0.91387 0.91931 0.93934 0.91618 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.24 71.98 0.74 -0.46 16 2 C 0.12 1.06 7.24 86.38 0.63 1.69 16 3 N -0.13 -2.46 3.94 -187.49 -0.74 -3.20 16 4 N -0.30 -6.16 12.01 -56.16 -0.67 -6.84 16 5 C 0.03 0.68 12.04 85.46 1.03 1.71 16 6 C -0.06 -1.64 7.21 42.24 0.30 -1.33 16 7 C 0.61 18.11 7.83 86.77 0.68 18.79 16 8 O -0.56 -19.39 16.55 -3.90 -0.06 -19.46 16 9 N -0.68 -19.24 4.18 -457.66 -1.91 -21.16 16 10 C 0.15 4.97 3.98 42.46 0.17 5.14 16 11 H 0.10 3.25 7.45 -2.39 -0.02 3.24 16 12 C -0.16 -6.15 2.98 -14.17 -0.04 -6.19 16 13 H 0.08 3.48 5.88 -2.39 -0.01 3.47 16 14 C -0.08 -2.85 5.94 30.38 0.18 -2.67 16 15 C -0.11 -4.65 5.90 30.80 0.18 -4.47 16 16 C 0.16 7.38 5.75 85.85 0.49 7.87 16 17 N -0.58 -27.54 2.91 -689.89 -2.00 -29.54 16 18 C -0.23 -11.64 7.77 84.03 0.65 -10.98 16 19 H 0.07 3.34 7.28 -2.91 -0.02 3.32 16 20 C -0.05 -2.53 5.07 84.86 0.43 -2.10 16 21 N -0.92 -52.40 11.16 21.65 0.24 -52.16 16 22 Si 0.95 44.01 29.59 68.60 2.03 46.04 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.14 5.28 2.93 42.87 0.13 5.41 16 27 H 0.06 2.04 6.50 -2.39 -0.02 2.02 16 28 C -0.06 -1.98 1.39 -55.19 -0.08 -2.06 16 29 C -0.13 -3.52 9.22 71.98 0.66 -2.86 16 30 C -0.11 -3.96 8.41 71.98 0.61 -3.36 16 31 N -0.25 -5.76 11.84 -48.17 -0.57 -6.33 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.22 3.91 8.06 -2.91 -0.02 3.88 16 38 H 0.41 10.89 6.12 -92.71 -0.57 10.32 16 39 H 0.06 1.96 7.97 -2.39 -0.02 1.94 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 44 H 0.07 3.53 5.67 -2.39 -0.01 3.52 16 45 H 0.24 13.72 8.31 -92.72 -0.77 12.95 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.06 1.54 6.46 -2.39 -0.02 1.52 16 49 H 0.04 1.71 5.92 -2.39 -0.01 1.70 16 50 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.06 2.43 6.12 -2.39 -0.01 2.41 16 Total: -1.00 -66.05 396.87 3.44 -62.61 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.38 Total: 25.91 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.76 Total: 4.12 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -5.66 Total: -119.22 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.05 3.44 -62.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285044.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.147 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds