Wall clock time and date at job start Wed Apr 1 2020 05:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47058 * 2 1 4 4 C 1.46896 * 110.99880 * 297.55945 * 3 2 1 5 5 C 1.53004 * 109.47157 * 288.26347 * 4 3 2 6 6 C 1.46898 * 110.99784 * 61.51057 * 3 2 1 7 7 C 1.50700 * 109.47092 * 66.04670 * 6 3 2 8 8 O 1.21286 * 120.00134 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00125 * 180.02562 * 7 6 3 10 10 C 1.46503 * 120.00081 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.41374 * 34.30019 * 10 9 7 12 12 C 1.54729 * 110.46370 * 156.78426 * 10 9 7 13 13 C 1.53716 * 101.40064 * 142.94259 * 12 10 9 14 14 C 1.53037 * 115.17817 * 105.40993 * 13 12 10 15 15 N 1.47752 * 85.82649 * 93.68934 * 14 13 12 16 16 C 1.36932 * 134.41476 * 204.00522 * 15 14 13 17 17 H 1.08001 * 120.00359 * 179.97438 * 16 15 14 18 18 C 1.38816 * 119.99939 * 359.94966 * 16 15 14 19 19 N 1.31620 * 119.99800 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00185 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46960 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47380 * 119.99918 * 20 18 16 23 23 H 1.48501 * 109.46978 * 240.00360 * 20 18 16 24 24 C 1.47762 * 91.17401 * 23.97198 * 15 14 13 25 25 N 1.46162 * 106.70350 * 335.22824 * 13 12 10 26 26 C 1.37266 * 142.22177 * 196.35904 * 25 13 12 27 27 C 1.34527 * 106.91480 * 179.97438 * 26 25 13 28 28 N 1.33984 * 108.04657 * 0.02562 * 27 26 25 29 29 C 1.30853 * 109.34953 * 0.03584 * 28 27 26 30 30 H 1.09001 * 109.47451 * 61.26879 * 1 2 3 31 31 H 1.09005 * 109.47061 * 181.26188 * 1 2 3 32 32 H 1.09001 * 109.47413 * 301.26470 * 1 2 3 33 33 H 1.09002 * 109.47353 * 240.00194 * 2 1 3 34 34 H 1.08997 * 109.47564 * 120.00389 * 2 1 3 35 35 H 1.08999 * 109.47626 * 48.26679 * 4 3 2 36 36 H 1.09005 * 109.46782 * 168.27225 * 4 3 2 37 37 H 1.09001 * 109.46496 * 59.88465 * 5 4 3 38 38 H 1.09002 * 109.47321 * 179.88114 * 5 4 3 39 39 H 1.08993 * 109.47443 * 299.88587 * 5 4 3 40 40 H 1.08997 * 109.47151 * 186.04499 * 6 3 2 41 41 H 1.08996 * 109.47294 * 306.04574 * 6 3 2 42 42 H 0.96998 * 119.99861 * 359.97438 * 9 7 6 43 43 H 1.08996 * 111.02060 * 261.07233 * 12 10 9 44 44 H 1.08998 * 111.02270 * 24.97046 * 12 10 9 45 45 H 1.09004 * 113.81129 * 207.91727 * 14 13 12 46 46 H 1.09000 * 113.81682 * 339.45737 * 14 13 12 47 47 H 0.96995 * 120.00109 * 179.97438 * 19 18 16 48 48 H 1.08999 * 113.81326 * 221.80046 * 24 15 14 49 49 H 1.08997 * 113.81863 * 90.25169 * 24 15 14 50 50 H 1.07997 * 126.54099 * 359.93045 * 26 25 13 51 51 H 1.07997 * 125.97738 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5968 2.0928 -1.2158 5 6 2.3837 1.5608 -2.4153 6 6 1.5783 2.0993 1.2054 7 6 2.2309 1.4884 2.4186 8 8 2.9886 0.5499 2.2916 9 7 1.9717 1.9841 3.6448 10 6 2.6057 1.3898 4.8242 11 1 3.6106 1.0440 4.5821 12 6 2.6500 2.4102 5.9865 13 6 2.3913 1.5012 7.1989 14 6 3.6185 1.2048 8.0639 15 7 3.1840 2.3545 8.8840 16 6 3.8198 3.2212 9.7323 17 1 3.2602 4.0021 10.2256 18 6 5.1836 3.0958 9.9586 19 7 5.8657 2.1441 9.3574 20 14 6.0509 4.2777 11.1163 21 1 5.0677 5.2488 11.6601 22 1 6.6644 3.5156 12.2334 23 1 7.1100 5.0087 10.3753 24 6 1.7894 2.1957 8.4223 25 7 1.6633 0.3353 6.7020 26 6 0.8965 -0.7239 7.1196 27 6 0.5586 -1.4202 6.0193 28 7 1.1013 -0.8085 4.9580 29 6 1.7667 0.2448 5.3580 30 1 -0.3634 0.4940 -0.9011 31 1 -0.3633 -1.0275 0.0226 32 1 -0.3634 0.5333 0.8784 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5315 1.9302 -1.3791 36 1 1.7881 3.1597 -1.1001 37 1 2.1941 0.4935 -2.5296 38 1 2.0685 2.0845 -3.3178 39 1 3.4488 1.7253 -2.2530 40 1 1.8622 3.1490 1.1300 41 1 0.4950 2.0217 1.2976 42 1 1.3654 2.7344 3.7463 43 1 3.6290 2.8848 6.0530 44 1 1.8620 3.1560 5.8824 45 1 3.5689 0.2486 8.5850 46 1 4.5672 1.3633 7.5511 47 1 6.8187 2.0567 9.5152 48 1 1.2918 3.1380 8.1930 49 1 1.1897 1.5378 9.0512 50 1 0.6182 -0.9546 8.1373 51 1 -0.0440 -2.3161 5.9956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101647773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:57 Heat of formation + Delta-G solvation = 116.070901 kcal Electronic energy + Delta-G solvation = -31487.004522 eV Core-core repulsion = 27425.483705 eV Total energy + Delta-G solvation = -4061.520817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.26328 -39.90959 -38.60405 -37.74039 -35.38940 -33.37371 -31.88181 -31.61186 -31.01205 -30.02740 -28.16543 -27.51785 -26.32339 -25.36660 -24.30189 -23.91161 -22.18318 -21.27009 -20.96847 -19.95025 -19.69167 -18.67876 -17.20007 -17.04353 -16.45159 -16.39302 -15.98686 -15.63255 -15.04648 -14.96580 -14.50710 -14.31346 -14.16701 -13.97172 -13.74172 -13.60960 -13.40967 -13.21256 -12.87817 -12.84808 -12.52343 -12.30823 -12.15762 -12.10778 -12.04588 -11.81975 -11.59560 -11.55926 -11.18827 -11.12877 -11.03423 -10.94261 -10.67255 -10.58774 -10.19728 -9.81987 -9.64421 -9.52337 -9.15135 -9.02844 -8.99001 -8.39879 -8.03706 -7.18534 -5.98212 -3.33926 2.34549 2.73792 2.90986 3.16577 3.28138 3.34093 3.36299 3.53404 3.86973 4.14357 4.27237 4.50080 4.67905 4.73199 4.81791 4.90173 4.93477 4.95770 5.03660 5.09168 5.15801 5.22723 5.28954 5.30338 5.38219 5.39035 5.46581 5.50483 5.64285 5.71872 5.83297 5.83767 5.91115 5.95498 5.97516 5.98611 6.06921 6.16764 6.19280 6.25720 6.46222 6.74863 6.79942 6.81377 6.91940 6.94668 7.18559 7.24324 7.46092 7.54191 7.73135 8.34956 8.49964 8.81163 9.47665 10.27874 11.18601 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.002609 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.352122 B =10728.926628 C =11972.582807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 N -0.517 5.517 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.032 3.968 7 C 0.519 3.481 8 O -0.507 6.507 9 N -0.720 5.720 10 C 0.232 3.768 11 H 0.118 0.882 12 C -0.094 4.094 13 C 0.102 3.898 14 C 0.171 3.829 15 N -0.600 5.600 16 C -0.231 4.231 17 H 0.085 0.915 18 C -0.002 4.002 19 N -0.917 5.917 20 Si 0.916 3.084 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.287 1.287 24 C 0.124 3.876 25 N -0.452 5.452 26 C -0.027 4.027 27 C -0.037 4.037 28 N -0.472 5.472 29 C 0.169 3.831 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.399 0.601 43 H 0.116 0.884 44 H 0.088 0.912 45 H 0.036 0.964 46 H 0.087 0.913 47 H 0.258 0.742 48 H 0.057 0.943 49 H 0.041 0.959 50 H 0.166 0.834 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 0.817 -16.983 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.087 4.087 3 N -0.241 5.241 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.099 4.099 7 C 0.305 3.695 8 O -0.380 6.380 9 N -0.373 5.373 10 C 0.125 3.875 11 H 0.135 0.865 12 C -0.133 4.133 13 C 0.017 3.983 14 C 0.045 3.955 15 N -0.327 5.327 16 C -0.358 4.358 17 H 0.103 0.897 18 C -0.199 4.199 19 N -0.563 5.563 20 Si 0.746 3.254 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.002 4.002 25 N -0.134 5.134 26 C -0.161 4.161 27 C -0.186 4.186 28 N -0.191 5.191 29 C -0.095 4.095 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.234 0.766 43 H 0.135 0.865 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.106 0.894 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.058 0.942 50 H 0.184 0.816 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.673 0.074 -17.486 20.486 hybrid contribution -0.847 0.893 1.920 2.281 sum -11.520 0.966 -15.566 19.389 Atomic orbital electron populations 1.22424 0.98740 1.02605 1.01306 1.22387 0.92187 0.89569 1.04600 1.61940 1.59523 1.02479 1.00179 1.22167 0.97718 0.98216 0.90187 1.21748 1.01241 1.01155 0.96233 1.22003 0.98834 0.99209 0.89831 1.20421 0.81826 0.83492 0.83807 1.90702 1.34979 1.26725 1.85575 1.45876 1.49412 1.36478 1.05549 1.19939 0.95338 0.87673 0.84579 0.86466 1.22609 1.05612 0.95799 0.89289 1.23799 0.96306 0.83449 0.94775 1.22505 0.93844 0.90853 0.88304 1.45790 1.01543 1.32378 1.52976 1.19013 0.90755 1.06833 1.19194 0.89708 1.24839 0.96282 0.98632 1.00176 1.69794 1.07703 1.33294 1.45480 0.85996 0.79535 0.79837 0.80038 1.20326 1.21558 1.21408 1.22708 0.90102 0.97208 0.90205 1.46564 1.36490 1.20574 1.09816 1.22339 1.01594 0.91349 1.00834 1.22208 1.06339 1.02388 0.87656 1.69778 1.12331 1.05835 1.31163 1.24551 1.03407 0.98613 0.82967 0.92822 0.91873 0.92625 0.90736 0.88119 0.94230 0.91016 0.92635 0.92506 0.91764 0.88047 0.91531 0.76610 0.86532 0.89306 0.94664 0.89450 0.93226 0.92481 0.94154 0.81634 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 9.28 37.15 0.34 -1.49 16 2 C 0.04 0.45 5.57 -3.83 -0.02 0.43 16 3 N -0.52 -5.56 4.41 -236.08 -1.04 -6.60 16 4 C 0.04 0.36 5.55 -3.82 -0.02 0.34 16 5 C -0.15 -1.12 9.96 37.16 0.37 -0.75 16 6 C 0.03 0.32 5.23 -4.98 -0.03 0.29 16 7 C 0.52 6.94 7.54 -10.98 -0.08 6.85 16 8 O -0.51 -8.94 13.99 5.55 0.08 -8.86 16 9 N -0.72 -8.69 5.15 -53.58 -0.28 -8.96 16 10 C 0.23 3.49 3.25 -67.70 -0.22 3.27 16 11 H 0.12 1.97 7.61 -51.93 -0.40 1.58 16 12 C -0.09 -1.37 6.19 -25.45 -0.16 -1.53 16 13 C 0.10 1.78 1.56 -136.62 -0.21 1.57 16 14 C 0.17 3.78 6.94 -3.34 -0.02 3.75 16 15 N -0.60 -14.01 3.69 -182.63 -0.67 -14.68 16 16 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 17 H 0.09 2.11 7.83 -52.49 -0.41 1.70 16 18 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 19 N -0.92 -25.60 11.39 55.49 0.63 -24.96 16 20 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.12 2.32 8.46 -3.35 -0.03 2.29 16 25 N -0.45 -7.77 3.37 -103.40 -0.35 -8.11 16 26 C -0.03 -0.43 12.03 -16.43 -0.20 -0.63 16 27 C -0.04 -0.59 11.86 -17.92 -0.21 -0.80 16 28 N -0.47 -8.69 11.25 -10.50 -0.12 -8.81 16 29 C 0.17 2.94 8.23 -154.60 -1.27 1.67 16 30 H 0.05 0.44 6.29 -51.93 -0.33 0.11 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.56 6.25 -51.93 -0.32 0.24 16 33 H 0.07 0.79 6.60 -51.93 -0.34 0.44 16 34 H 0.10 1.48 5.86 -51.93 -0.30 1.18 16 35 H 0.04 0.30 5.89 -51.93 -0.31 -0.01 16 36 H 0.07 0.51 7.81 -51.93 -0.41 0.10 16 37 H 0.05 0.44 6.71 -51.93 -0.35 0.09 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.77 7.86 -51.93 -0.41 0.36 16 41 H 0.07 0.58 6.02 -51.93 -0.31 0.26 16 42 H 0.40 3.53 8.40 -40.82 -0.34 3.19 16 43 H 0.12 1.81 7.92 -51.93 -0.41 1.40 16 44 H 0.09 1.07 7.78 -51.93 -0.40 0.66 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 2.11 7.08 -51.93 -0.37 1.74 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 51 H 0.17 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -32.87 401.10 -10.67 -43.54 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.92 Total: 6.54 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -2.02 Total: 9.00 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.82 Total: -72.13 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.87 -10.67 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101647773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.607 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds