Wall clock time and date at job start Wed Apr 1 2020 05:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47058 * 2 1 4 4 C 1.46896 * 110.99880 * 297.55945 * 3 2 1 5 5 C 1.53004 * 109.47157 * 288.26347 * 4 3 2 6 6 C 1.46898 * 110.99784 * 61.51057 * 3 2 1 7 7 C 1.50700 * 109.47092 * 66.04670 * 6 3 2 8 8 O 1.21286 * 120.00134 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00125 * 180.02562 * 7 6 3 10 10 C 1.46503 * 120.00081 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.41374 * 34.30019 * 10 9 7 12 12 C 1.54729 * 110.46370 * 156.78426 * 10 9 7 13 13 C 1.53716 * 101.40064 * 142.94259 * 12 10 9 14 14 C 1.53037 * 115.17817 * 105.40993 * 13 12 10 15 15 N 1.47752 * 85.82649 * 93.68934 * 14 13 12 16 16 C 1.36932 * 134.41476 * 204.00522 * 15 14 13 17 17 H 1.08001 * 120.00359 * 179.97438 * 16 15 14 18 18 C 1.38816 * 119.99939 * 359.94966 * 16 15 14 19 19 N 1.31620 * 119.99800 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00185 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46960 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47380 * 119.99918 * 20 18 16 23 23 H 1.48501 * 109.46978 * 240.00360 * 20 18 16 24 24 C 1.47762 * 91.17401 * 23.97198 * 15 14 13 25 25 N 1.46162 * 106.70350 * 335.22824 * 13 12 10 26 26 C 1.37266 * 142.22177 * 196.35904 * 25 13 12 27 27 C 1.34527 * 106.91480 * 179.97438 * 26 25 13 28 28 N 1.33984 * 108.04657 * 0.02562 * 27 26 25 29 29 C 1.30853 * 109.34953 * 0.03584 * 28 27 26 30 30 H 1.09001 * 109.47451 * 61.26879 * 1 2 3 31 31 H 1.09005 * 109.47061 * 181.26188 * 1 2 3 32 32 H 1.09001 * 109.47413 * 301.26470 * 1 2 3 33 33 H 1.09002 * 109.47353 * 240.00194 * 2 1 3 34 34 H 1.08997 * 109.47564 * 120.00389 * 2 1 3 35 35 H 1.08999 * 109.47626 * 48.26679 * 4 3 2 36 36 H 1.09005 * 109.46782 * 168.27225 * 4 3 2 37 37 H 1.09001 * 109.46496 * 59.88465 * 5 4 3 38 38 H 1.09002 * 109.47321 * 179.88114 * 5 4 3 39 39 H 1.08993 * 109.47443 * 299.88587 * 5 4 3 40 40 H 1.08997 * 109.47151 * 186.04499 * 6 3 2 41 41 H 1.08996 * 109.47294 * 306.04574 * 6 3 2 42 42 H 0.96998 * 119.99861 * 359.97438 * 9 7 6 43 43 H 1.08996 * 111.02060 * 261.07233 * 12 10 9 44 44 H 1.08998 * 111.02270 * 24.97046 * 12 10 9 45 45 H 1.09004 * 113.81129 * 207.91727 * 14 13 12 46 46 H 1.09000 * 113.81682 * 339.45737 * 14 13 12 47 47 H 0.96995 * 120.00109 * 179.97438 * 19 18 16 48 48 H 1.08999 * 113.81326 * 221.80046 * 24 15 14 49 49 H 1.08997 * 113.81863 * 90.25169 * 24 15 14 50 50 H 1.07997 * 126.54099 * 359.93045 * 26 25 13 51 51 H 1.07997 * 125.97738 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5968 2.0928 -1.2158 5 6 2.3837 1.5608 -2.4153 6 6 1.5783 2.0993 1.2054 7 6 2.2309 1.4884 2.4186 8 8 2.9886 0.5499 2.2916 9 7 1.9717 1.9841 3.6448 10 6 2.6057 1.3898 4.8242 11 1 3.6106 1.0440 4.5821 12 6 2.6500 2.4102 5.9865 13 6 2.3913 1.5012 7.1989 14 6 3.6185 1.2048 8.0639 15 7 3.1840 2.3545 8.8840 16 6 3.8198 3.2212 9.7323 17 1 3.2602 4.0021 10.2256 18 6 5.1836 3.0958 9.9586 19 7 5.8657 2.1441 9.3574 20 14 6.0509 4.2777 11.1163 21 1 5.0677 5.2488 11.6601 22 1 6.6644 3.5156 12.2334 23 1 7.1100 5.0087 10.3753 24 6 1.7894 2.1957 8.4223 25 7 1.6633 0.3353 6.7020 26 6 0.8965 -0.7239 7.1196 27 6 0.5586 -1.4202 6.0193 28 7 1.1013 -0.8085 4.9580 29 6 1.7667 0.2448 5.3580 30 1 -0.3634 0.4940 -0.9011 31 1 -0.3633 -1.0275 0.0226 32 1 -0.3634 0.5333 0.8784 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5315 1.9302 -1.3791 36 1 1.7881 3.1597 -1.1001 37 1 2.1941 0.4935 -2.5296 38 1 2.0685 2.0845 -3.3178 39 1 3.4488 1.7253 -2.2530 40 1 1.8622 3.1490 1.1300 41 1 0.4950 2.0217 1.2976 42 1 1.3654 2.7344 3.7463 43 1 3.6290 2.8848 6.0530 44 1 1.8620 3.1560 5.8824 45 1 3.5689 0.2486 8.5850 46 1 4.5672 1.3633 7.5511 47 1 6.8187 2.0567 9.5152 48 1 1.2918 3.1380 8.1930 49 1 1.1897 1.5378 9.0512 50 1 0.6182 -0.9546 8.1373 51 1 -0.0440 -2.3161 5.9956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101647773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:56 Heat of formation + Delta-G solvation = 93.512191 kcal Electronic energy + Delta-G solvation = -31487.982741 eV Core-core repulsion = 27425.483705 eV Total energy + Delta-G solvation = -4062.499036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.60217 -40.91433 -40.12266 -38.63546 -36.67824 -34.89696 -33.58085 -32.37347 -32.09970 -30.95870 -29.67421 -28.99256 -27.31247 -27.01044 -25.64866 -24.72960 -23.64150 -22.68108 -21.99925 -21.04461 -20.75406 -20.09730 -18.89525 -18.20769 -17.55899 -17.41737 -17.17427 -16.67037 -16.62519 -16.13702 -15.78986 -15.71281 -15.36147 -15.23731 -14.88765 -14.79865 -14.69851 -14.41288 -13.98268 -13.87128 -13.69473 -13.59918 -13.29108 -13.20389 -13.00594 -12.87695 -12.83023 -12.75130 -12.65141 -12.62163 -12.30381 -12.09215 -11.93510 -11.91231 -11.66722 -11.43392 -10.98035 -10.87769 -10.71006 -10.43976 -10.25873 -9.33505 -9.14184 -9.09024 -7.97541 -5.34043 1.03953 1.47036 1.47449 1.57889 1.63371 1.77382 1.97815 2.29879 2.45055 2.85280 3.05811 3.10683 3.28226 3.37463 3.49418 3.60936 3.87144 4.04340 4.06285 4.15575 4.20162 4.24504 4.32458 4.40094 4.42902 4.52183 4.55375 4.58832 4.61778 4.68152 4.72447 4.73270 4.74191 4.84941 4.86579 5.05738 5.06241 5.11648 5.13861 5.20815 5.27269 5.35467 5.39329 5.47585 5.50924 5.77683 5.91839 6.03544 6.12441 6.22146 6.61730 6.81344 7.18273 7.37319 7.51795 8.38441 9.19150 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.002609 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.352122 B =10728.926628 C =11972.582807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.045 3.955 3 N -0.538 5.538 4 C 0.045 3.955 5 C -0.145 4.145 6 C 0.039 3.961 7 C 0.514 3.486 8 O -0.557 6.557 9 N -0.705 5.705 10 C 0.239 3.761 11 H 0.091 0.909 12 C -0.082 4.082 13 C 0.124 3.876 14 C 0.168 3.832 15 N -0.623 5.623 16 C -0.232 4.232 17 H 0.095 0.905 18 C -0.061 4.061 19 N -0.952 5.952 20 Si 0.979 3.021 21 H -0.261 1.261 22 H -0.298 1.298 23 H -0.291 1.291 24 C 0.130 3.870 25 N -0.459 5.459 26 C -0.034 4.034 27 C -0.040 4.040 28 N -0.501 5.501 29 C 0.159 3.841 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.419 0.581 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.009 0.991 46 H 0.058 0.942 47 H 0.250 0.750 48 H 0.086 0.914 49 H 0.047 0.953 50 H 0.189 0.811 51 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.665 2.939 -17.822 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.083 4.083 3 N -0.262 5.262 4 C -0.081 4.081 5 C -0.203 4.203 6 C -0.092 4.092 7 C 0.301 3.699 8 O -0.433 6.433 9 N -0.360 5.360 10 C 0.130 3.870 11 H 0.109 0.891 12 C -0.120 4.120 13 C 0.039 3.961 14 C 0.041 3.959 15 N -0.350 5.350 16 C -0.360 4.360 17 H 0.113 0.887 18 C -0.254 4.254 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.225 1.225 23 H -0.218 1.218 24 C 0.005 3.995 25 N -0.142 5.142 26 C -0.166 4.166 27 C -0.188 4.188 28 N -0.220 5.220 29 C -0.105 4.105 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.149 0.851 41 H 0.103 0.897 42 H 0.257 0.743 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.027 0.973 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.104 0.896 49 H 0.065 0.935 50 H 0.206 0.794 51 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.414 2.228 -18.334 22.826 hybrid contribution -0.060 0.125 2.167 2.171 sum -13.474 2.352 -16.167 21.176 Atomic orbital electron populations 1.22333 0.97195 1.02673 1.01956 1.22188 0.93360 0.90079 1.02677 1.61891 1.60460 1.02402 1.01494 1.22249 0.98305 0.98709 0.88872 1.21747 1.00414 1.01021 0.97077 1.22054 0.99334 1.00067 0.87695 1.21191 0.81056 0.82756 0.84863 1.90693 1.37298 1.29024 1.86286 1.45714 1.49217 1.36615 1.04412 1.19678 0.94077 0.87453 0.85767 0.89113 1.22574 1.06379 0.95699 0.87363 1.23347 0.93565 0.83799 0.95417 1.22300 0.94816 0.89608 0.89161 1.46033 1.03967 1.32150 1.52818 1.19412 0.91040 1.06931 1.18568 0.88749 1.25641 0.97265 1.00415 1.02128 1.69986 1.07350 1.35350 1.47346 0.85001 0.78437 0.78062 0.77740 1.18453 1.22549 1.21765 1.22843 0.88073 0.98642 0.89948 1.46576 1.36884 1.20903 1.09814 1.22820 1.01064 0.90747 1.02003 1.22731 1.06092 1.02972 0.87018 1.69788 1.13302 1.06486 1.32449 1.24916 1.03456 0.98961 0.83205 0.90944 0.92140 0.93016 0.90637 0.92086 0.93052 0.89448 0.93339 0.90580 0.93152 0.85068 0.89679 0.74330 0.87611 0.85533 0.97294 0.92419 0.94090 0.89597 0.93530 0.79410 0.78703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 9.28 71.98 0.67 -2.56 16 2 C 0.04 1.01 5.57 86.30 0.48 1.49 16 3 N -0.54 -10.87 4.41 -900.82 -3.97 -14.83 16 4 C 0.05 0.62 5.55 86.31 0.48 1.10 16 5 C -0.14 -1.98 9.96 71.98 0.72 -1.26 16 6 C 0.04 0.68 5.23 85.56 0.45 1.13 16 7 C 0.51 13.44 7.54 87.66 0.66 14.10 16 8 O -0.56 -20.34 13.99 -3.05 -0.04 -20.39 16 9 N -0.71 -16.07 5.15 -441.82 -2.27 -18.34 16 10 C 0.24 7.14 3.25 45.14 0.15 7.29 16 11 H 0.09 3.22 7.61 -2.39 -0.02 3.20 16 12 C -0.08 -2.28 6.19 31.42 0.19 -2.08 16 13 C 0.12 4.27 1.56 5.68 0.01 4.27 16 14 C 0.17 7.64 6.94 86.15 0.60 8.24 16 15 N -0.62 -28.93 3.69 -731.72 -2.70 -31.63 16 16 C -0.23 -11.86 10.70 84.04 0.90 -10.96 16 17 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 18 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 19 N -0.95 -54.98 11.39 21.65 0.25 -54.74 16 20 Si 0.98 43.20 29.55 68.60 2.03 45.23 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 24 C 0.13 4.59 8.46 86.14 0.73 5.32 16 25 N -0.46 -15.40 3.37 -481.04 -1.62 -17.03 16 26 C -0.03 -1.03 12.03 82.99 1.00 -0.03 16 27 C -0.04 -1.24 11.86 83.51 0.99 -0.25 16 28 N -0.50 -18.24 11.25 -187.12 -2.11 -20.34 16 29 C 0.16 5.48 8.23 138.31 1.14 6.62 16 30 H 0.07 1.00 6.29 -2.39 -0.02 0.98 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.05 0.95 6.25 -2.39 -0.01 0.93 16 33 H 0.08 1.61 6.60 -2.39 -0.02 1.60 16 34 H 0.06 1.89 5.86 -2.39 -0.01 1.87 16 35 H 0.05 0.59 5.89 -2.39 -0.01 0.58 16 36 H 0.09 0.93 7.81 -2.38 -0.02 0.91 16 37 H 0.05 0.72 6.71 -2.39 -0.02 0.70 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.13 1.51 7.86 -2.39 -0.02 1.49 16 41 H 0.09 1.20 6.02 -2.39 -0.01 1.19 16 42 H 0.42 6.17 8.40 -92.71 -0.78 5.39 16 43 H 0.11 3.26 7.92 -2.39 -0.02 3.24 16 44 H 0.13 2.58 7.78 -2.39 -0.02 2.56 16 45 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.06 2.95 7.08 -2.39 -0.02 2.94 16 47 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 48 H 0.09 2.58 8.09 -2.39 -0.02 2.56 16 49 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 51 H 0.20 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -74.61 401.10 -0.65 -75.26 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.17 Total: 27.18 kcal Atomic # 6 Polarization: 20.01 SS G_CDS: 9.62 Total: 29.63 kcal Atomic # 7 Polarization: -144.48 SS G_CDS: -12.43 Total: -156.91 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.04 Total: -20.39 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -74.61 -0.65 -75.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101647773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.772 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds