Wall clock time and date at job start Wed Apr 1 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34587 * 125.74980 * 2 1 4 4 N 1.30865 * 107.62797 * 179.72806 * 3 2 1 5 5 C 1.34548 * 107.26837 * 0.39319 * 4 3 2 6 6 C 1.47873 * 126.05153 * 179.86977 * 5 4 3 7 7 O 1.21556 * 120.00216 * 185.26747 * 6 5 4 8 8 N 1.34772 * 119.99522 * 5.25701 * 6 5 4 9 9 C 1.46921 * 120.63504 * 8.83056 * 8 6 5 10 10 C 1.53192 * 108.78222 * 126.38487 * 9 8 6 11 11 C 1.53042 * 109.30973 * 54.63524 * 10 9 8 12 12 C 1.53048 * 109.53956 * 298.63702 * 11 10 9 13 13 C 1.46935 * 120.62965 * 188.81986 * 8 6 5 14 14 H 1.08996 * 109.70142 * 113.75539 * 13 8 6 15 15 C 1.53001 * 109.58562 * 353.40151 * 13 8 6 16 16 C 1.52996 * 112.84979 * 293.85865 * 15 13 8 17 17 N 1.46499 * 109.47243 * 173.35377 * 16 15 13 18 18 C 1.36938 * 120.00170 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99713 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99989 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99714 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47092 * 60.00854 * 22 20 18 24 24 H 1.48501 * 109.46904 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47467 * 300.00348 * 22 20 18 26 26 C 1.53788 * 113.61264 * 65.04946 * 15 13 8 27 27 C 1.53959 * 87.01916 * 89.23035 * 26 15 13 28 28 C 1.53780 * 113.61511 * 162.65655 * 15 13 8 29 29 N 1.28848 * 125.75350 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47224 * 269.99888 * 1 2 3 31 31 H 1.09000 * 109.46995 * 29.99660 * 1 2 3 32 32 H 1.08997 * 109.46841 * 149.99438 * 1 2 3 33 33 H 1.08001 * 126.18515 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.58698 * 6.59071 * 9 8 6 35 35 H 1.09007 * 109.70153 * 246.24384 * 9 8 6 36 36 H 1.08995 * 109.49539 * 294.68641 * 10 9 8 37 37 H 1.08997 * 109.52814 * 174.59768 * 10 9 8 38 38 H 1.08996 * 109.46053 * 178.61461 * 11 10 9 39 39 H 1.08998 * 109.46349 * 58.65471 * 11 10 9 40 40 H 1.09005 * 109.49372 * 301.41699 * 12 11 10 41 41 H 1.09003 * 109.52423 * 181.33628 * 12 11 10 42 42 H 1.08997 * 109.47883 * 53.34630 * 16 15 13 43 43 H 1.09010 * 109.46928 * 293.34783 * 16 15 13 44 44 H 0.97005 * 119.99647 * 359.97438 * 17 16 15 45 45 H 0.97005 * 119.99258 * 179.97438 * 21 20 18 46 46 H 1.08997 * 113.60982 * 203.74403 * 26 15 13 47 47 H 1.08999 * 113.61443 * 334.65185 * 26 15 13 48 48 H 1.09000 * 113.53776 * 270.81460 * 27 26 15 49 49 H 1.09000 * 113.66778 * 139.92904 * 27 26 15 50 50 H 1.08998 * 113.61453 * 25.34983 * 28 15 13 51 51 H 1.08996 * 113.61594 * 156.25295 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 0.0059 5 6 3.4750 -0.6601 0.0008 6 6 4.6575 -1.5480 0.0018 7 8 4.5145 -2.7508 -0.0999 8 7 5.8938 -1.0236 0.1153 9 6 6.0773 0.3995 0.4313 10 6 6.9953 0.5194 1.6517 11 6 8.2978 -0.2374 1.3816 12 6 7.9907 -1.7190 1.1518 13 6 7.0839 -1.8642 -0.0743 14 1 7.6217 -1.5438 -0.9666 15 6 6.6599 -3.3262 -0.2284 16 6 6.0386 -3.9021 1.0457 17 7 5.5179 -5.2437 0.7718 18 6 4.9133 -5.9604 1.7698 19 1 4.8200 -5.5364 2.7587 20 6 4.4194 -7.2315 1.5101 21 7 4.5327 -7.7479 0.3047 22 14 3.5940 -8.2088 2.8713 23 1 2.4130 -7.4605 3.3717 24 1 3.1578 -9.5254 2.3407 25 1 4.5554 -8.4178 3.9835 26 6 5.8304 -3.5968 -1.4948 27 6 7.1655 -3.8546 -2.2169 28 6 7.7487 -4.2220 -0.8422 29 7 2.2179 -1.0457 0.0005 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 1.9164 2.1191 0.0004 34 1 5.1110 0.8517 0.6549 35 1 6.5310 0.9091 -0.4188 36 1 6.4998 0.0913 2.5231 37 1 7.2172 1.5700 1.8389 38 1 8.9629 -0.1331 2.2388 39 1 8.7804 0.1750 0.4955 40 1 7.4857 -2.1260 2.0279 41 1 8.9207 -2.2619 0.9829 42 1 5.2248 -3.2570 1.3769 43 1 6.7975 -3.9593 1.8261 44 1 5.6014 -5.6243 -0.1165 45 1 4.1879 -8.6363 0.1234 46 1 5.1965 -4.4804 -1.4209 47 1 5.2962 -2.7207 -1.8624 48 1 7.6054 -2.9572 -2.6521 49 1 7.1313 -4.6914 -2.9145 50 1 8.7609 -3.8499 -0.6837 51 1 7.6401 -5.2767 -0.5896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105535268.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:38 Heat of formation + Delta-G solvation = 167.171779 kcal Electronic energy + Delta-G solvation = -33446.402724 eV Core-core repulsion = 29387.097807 eV Total energy + Delta-G solvation = -4059.304917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.47431 -41.06303 -37.65053 -37.13236 -34.72641 -33.68063 -32.60516 -31.77666 -31.18128 -30.44587 -28.09409 -26.74803 -25.27679 -25.11646 -23.63278 -23.30546 -22.69297 -21.90014 -21.53240 -20.56325 -19.47260 -17.79061 -17.07610 -16.89643 -16.73811 -16.34972 -15.99382 -15.32158 -15.00456 -14.69086 -14.44432 -14.16438 -14.02037 -13.87585 -13.70790 -13.44661 -13.40801 -13.12957 -13.00833 -12.62313 -12.27427 -12.17107 -11.72016 -11.67626 -11.46853 -11.14386 -11.03801 -10.74345 -10.73911 -10.65789 -10.57350 -10.50028 -10.35119 -9.94420 -9.83304 -9.74316 -9.54623 -9.34256 -9.22593 -9.14910 -8.80203 -8.48562 -7.99738 -6.47360 -5.49485 -2.71800 1.50396 2.09177 2.13539 3.11719 3.58839 3.61993 3.63158 3.63987 4.03513 4.21878 4.56856 4.73220 4.80886 4.85114 4.93353 4.96621 5.05126 5.07664 5.21364 5.32300 5.44735 5.50072 5.51305 5.68498 5.70883 5.77426 5.81923 5.87620 5.92936 5.99708 6.06445 6.08944 6.16121 6.22601 6.26404 6.29242 6.44863 6.53018 6.55012 6.61186 6.71678 6.72983 6.81928 6.92305 7.08725 7.25770 7.42506 7.43850 7.67406 7.93733 8.01590 8.61928 8.71753 9.81552 10.48544 10.82792 11.74570 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008474 B = 0.004767 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.247339 B = 5872.753323 C = 7802.279410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.307 5.307 3 C 0.180 3.820 4 N -0.488 5.488 5 C 0.158 3.842 6 C 0.565 3.435 7 O -0.427 6.427 8 N -0.591 5.591 9 C 0.086 3.914 10 C -0.134 4.134 11 C -0.119 4.119 12 C -0.133 4.133 13 C 0.182 3.818 14 H 0.070 0.930 15 C -0.077 4.077 16 C 0.182 3.818 17 N -0.719 5.719 18 C -0.217 4.217 19 H 0.063 0.937 20 C -0.021 4.021 21 N -0.938 5.938 22 Si 0.901 3.099 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.289 1.289 26 C -0.080 4.080 27 C -0.165 4.165 28 C -0.128 4.128 29 N -0.249 5.249 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.222 0.778 34 H 0.133 0.867 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.042 0.958 43 H -0.003 1.003 44 H 0.383 0.617 45 H 0.251 0.749 46 H 0.099 0.901 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.052 0.948 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 25.170 -2.688 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.103 5.103 3 C -0.114 4.114 4 N -0.215 5.215 5 C -0.122 4.122 6 C 0.349 3.651 7 O -0.295 6.295 8 N -0.327 5.327 9 C -0.037 4.037 10 C -0.172 4.172 11 C -0.156 4.156 12 C -0.172 4.172 13 C 0.079 3.921 14 H 0.088 0.912 15 C -0.078 4.078 16 C 0.055 3.945 17 N -0.363 5.363 18 C -0.349 4.349 19 H 0.081 0.919 20 C -0.216 4.216 21 N -0.588 5.588 22 Si 0.734 3.266 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.217 1.217 26 C -0.117 4.117 27 C -0.203 4.203 28 C -0.166 4.166 29 N -0.087 5.087 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.238 0.762 34 H 0.150 0.850 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.014 0.986 44 H 0.219 0.781 45 H 0.061 0.939 46 H 0.117 0.883 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.071 0.929 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.237 23.936 -2.592 24.108 hybrid contribution -0.777 -0.219 0.544 0.974 sum -2.014 23.717 -2.048 23.890 Atomic orbital electron populations 1.22220 0.72484 1.05841 1.04934 1.47376 1.09271 1.03895 1.49718 1.26558 0.86447 0.95914 1.02497 1.71072 1.19200 1.09907 1.21297 1.24142 0.92520 0.89015 1.06512 1.16387 0.80823 0.86042 0.81865 1.91253 1.84209 1.11801 1.42241 1.47472 1.04098 1.10263 1.70868 1.22473 1.03802 0.80994 0.96429 1.21928 0.96351 1.00148 0.98809 1.21532 0.97122 0.95622 1.01345 1.22016 0.99825 0.96131 0.99190 1.20954 0.84456 0.89661 0.97042 0.91171 1.22125 0.96284 0.91523 0.97851 1.20782 0.94175 0.87831 0.91743 1.42356 1.69415 1.13009 1.11544 1.19169 1.28278 0.96172 0.91300 0.91926 1.24624 1.02716 0.97779 0.96441 1.69653 1.52863 1.16989 1.19343 0.86332 0.79429 0.79445 0.81445 1.21724 1.21925 1.21665 1.22939 0.94041 1.01886 0.92857 1.23170 1.00107 1.00170 0.96809 1.22994 0.96591 1.01298 0.95746 1.74498 1.02910 1.12722 1.18586 0.89218 0.88225 0.88093 0.76154 0.85003 0.92364 0.91797 0.91291 0.92071 0.92166 0.90560 0.90792 0.94136 0.98551 0.78109 0.93919 0.88300 0.93266 0.91826 0.92183 0.92879 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.38 59.85 0.68 1.13 16 2 N -0.31 -3.27 3.72 -69.40 -0.26 -3.53 16 3 C 0.18 1.61 12.62 -90.48 -1.14 0.47 16 4 N -0.49 -6.18 7.87 -12.36 -0.10 -6.28 16 5 C 0.16 2.60 7.65 -156.36 -1.20 1.40 16 6 C 0.57 10.37 5.83 -12.32 -0.07 10.30 16 7 O -0.43 -9.45 8.05 5.32 0.04 -9.41 16 8 N -0.59 -9.08 2.96 -166.31 -0.49 -9.57 16 9 C 0.09 1.04 6.07 -3.71 -0.02 1.02 16 10 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 11 C -0.12 -1.28 5.88 -26.69 -0.16 -1.43 16 12 C -0.13 -1.82 5.02 -26.61 -0.13 -1.95 16 13 C 0.18 2.79 2.30 -67.60 -0.16 2.63 16 14 H 0.07 1.00 7.33 -51.93 -0.38 0.62 16 15 C -0.08 -1.46 0.27 -153.69 -0.04 -1.50 16 16 C 0.18 4.23 4.05 -4.04 -0.02 4.22 16 17 N -0.72 -20.07 4.71 -59.91 -0.28 -20.35 16 18 C -0.22 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.06 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 21 N -0.94 -30.32 13.06 55.49 0.72 -29.59 16 22 Si 0.90 24.15 29.55 -169.99 -5.02 19.12 16 23 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 24 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 C -0.08 -1.60 4.51 -25.82 -0.12 -1.72 16 27 C -0.16 -2.83 7.74 -25.82 -0.20 -3.03 16 28 C -0.13 -2.33 6.91 -25.92 -0.18 -2.51 16 29 N -0.25 -4.07 12.09 32.07 0.39 -3.68 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.22 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.13 1.64 4.18 -58.87 -0.25 1.40 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.21 6.47 -51.93 -0.34 0.87 16 41 H 0.07 0.96 7.79 -51.93 -0.40 0.55 16 42 H 0.04 1.03 5.13 -53.59 -0.27 0.76 16 43 H 0.00 -0.07 6.95 -51.92 -0.36 -0.43 16 44 H 0.38 11.16 4.99 -40.82 -0.20 10.96 16 45 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 46 H 0.10 2.42 6.06 -51.93 -0.31 2.10 16 47 H 0.05 0.99 6.15 -51.93 -0.32 0.67 16 48 H 0.06 0.95 7.62 -51.93 -0.40 0.56 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.05 0.83 7.75 -51.93 -0.40 0.43 16 51 H 0.09 2.01 7.11 -51.93 -0.37 1.64 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -38.45 380.12 -10.21 -48.66 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.78 Total: 9.02 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -3.16 Total: -0.11 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -0.02 Total: -73.01 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.04 Total: -9.41 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.02 Total: 19.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.45 -10.21 -48.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105535268.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.831 kcal (2) G-P(sol) polarization free energy of solvation -38.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds