Wall clock time and date at job start Wed Apr 1 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34587 * 125.74980 * 2 1 4 4 N 1.30865 * 107.62797 * 179.72806 * 3 2 1 5 5 C 1.34548 * 107.26837 * 0.39319 * 4 3 2 6 6 C 1.47873 * 126.05153 * 179.86977 * 5 4 3 7 7 O 1.21556 * 120.00216 * 185.26747 * 6 5 4 8 8 N 1.34772 * 119.99522 * 5.25701 * 6 5 4 9 9 C 1.46921 * 120.63504 * 8.83056 * 8 6 5 10 10 C 1.53192 * 108.78222 * 126.38487 * 9 8 6 11 11 C 1.53042 * 109.30973 * 54.63524 * 10 9 8 12 12 C 1.53048 * 109.53956 * 298.63702 * 11 10 9 13 13 C 1.46935 * 120.62965 * 188.81986 * 8 6 5 14 14 H 1.08996 * 109.70142 * 113.75539 * 13 8 6 15 15 C 1.53001 * 109.58562 * 353.40151 * 13 8 6 16 16 C 1.52996 * 112.84979 * 293.85865 * 15 13 8 17 17 N 1.46499 * 109.47243 * 173.35377 * 16 15 13 18 18 C 1.36938 * 120.00170 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99713 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99989 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99714 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47092 * 60.00854 * 22 20 18 24 24 H 1.48501 * 109.46904 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47467 * 300.00348 * 22 20 18 26 26 C 1.53788 * 113.61264 * 65.04946 * 15 13 8 27 27 C 1.53959 * 87.01916 * 89.23035 * 26 15 13 28 28 C 1.53780 * 113.61511 * 162.65655 * 15 13 8 29 29 N 1.28848 * 125.75350 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47224 * 269.99888 * 1 2 3 31 31 H 1.09000 * 109.46995 * 29.99660 * 1 2 3 32 32 H 1.08997 * 109.46841 * 149.99438 * 1 2 3 33 33 H 1.08001 * 126.18515 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.58698 * 6.59071 * 9 8 6 35 35 H 1.09007 * 109.70153 * 246.24384 * 9 8 6 36 36 H 1.08995 * 109.49539 * 294.68641 * 10 9 8 37 37 H 1.08997 * 109.52814 * 174.59768 * 10 9 8 38 38 H 1.08996 * 109.46053 * 178.61461 * 11 10 9 39 39 H 1.08998 * 109.46349 * 58.65471 * 11 10 9 40 40 H 1.09005 * 109.49372 * 301.41699 * 12 11 10 41 41 H 1.09003 * 109.52423 * 181.33628 * 12 11 10 42 42 H 1.08997 * 109.47883 * 53.34630 * 16 15 13 43 43 H 1.09010 * 109.46928 * 293.34783 * 16 15 13 44 44 H 0.97005 * 119.99647 * 359.97438 * 17 16 15 45 45 H 0.97005 * 119.99258 * 179.97438 * 21 20 18 46 46 H 1.08997 * 113.60982 * 203.74403 * 26 15 13 47 47 H 1.08999 * 113.61443 * 334.65185 * 26 15 13 48 48 H 1.09000 * 113.53776 * 270.81460 * 27 26 15 49 49 H 1.09000 * 113.66778 * 139.92904 * 27 26 15 50 50 H 1.08998 * 113.61453 * 25.34983 * 28 15 13 51 51 H 1.08996 * 113.61594 * 156.25295 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 0.0059 5 6 3.4750 -0.6601 0.0008 6 6 4.6575 -1.5480 0.0018 7 8 4.5145 -2.7508 -0.0999 8 7 5.8938 -1.0236 0.1153 9 6 6.0773 0.3995 0.4313 10 6 6.9953 0.5194 1.6517 11 6 8.2978 -0.2374 1.3816 12 6 7.9907 -1.7190 1.1518 13 6 7.0839 -1.8642 -0.0743 14 1 7.6217 -1.5438 -0.9666 15 6 6.6599 -3.3262 -0.2284 16 6 6.0386 -3.9021 1.0457 17 7 5.5179 -5.2437 0.7718 18 6 4.9133 -5.9604 1.7698 19 1 4.8200 -5.5364 2.7587 20 6 4.4194 -7.2315 1.5101 21 7 4.5327 -7.7479 0.3047 22 14 3.5940 -8.2088 2.8713 23 1 2.4130 -7.4605 3.3717 24 1 3.1578 -9.5254 2.3407 25 1 4.5554 -8.4178 3.9835 26 6 5.8304 -3.5968 -1.4948 27 6 7.1655 -3.8546 -2.2169 28 6 7.7487 -4.2220 -0.8422 29 7 2.2179 -1.0457 0.0005 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 1.9164 2.1191 0.0004 34 1 5.1110 0.8517 0.6549 35 1 6.5310 0.9091 -0.4188 36 1 6.4998 0.0913 2.5231 37 1 7.2172 1.5700 1.8389 38 1 8.9629 -0.1331 2.2388 39 1 8.7804 0.1750 0.4955 40 1 7.4857 -2.1260 2.0279 41 1 8.9207 -2.2619 0.9829 42 1 5.2248 -3.2570 1.3769 43 1 6.7975 -3.9593 1.8261 44 1 5.6014 -5.6243 -0.1165 45 1 4.1879 -8.6363 0.1234 46 1 5.1965 -4.4804 -1.4209 47 1 5.2962 -2.7207 -1.8624 48 1 7.6054 -2.9572 -2.6521 49 1 7.1313 -4.6914 -2.9145 50 1 8.7609 -3.8499 -0.6837 51 1 7.6401 -5.2767 -0.5896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105535268.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:37 Heat of formation + Delta-G solvation = 141.702271 kcal Electronic energy + Delta-G solvation = -33447.507164 eV Core-core repulsion = 29387.097807 eV Total energy + Delta-G solvation = -4060.409357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.39685 -42.43985 -39.09087 -38.30741 -35.86201 -35.57345 -33.69110 -32.92123 -32.68715 -32.11694 -28.92635 -28.41730 -26.60492 -26.59752 -25.21963 -24.36004 -24.06798 -23.29897 -22.81155 -21.63500 -20.56581 -19.24979 -18.99734 -18.11248 -17.69399 -17.51354 -17.17303 -16.69887 -16.57381 -16.21299 -15.78973 -15.65280 -15.19262 -15.14132 -15.04907 -14.64562 -14.43783 -14.17421 -14.02792 -14.00790 -13.83480 -13.24963 -13.21581 -13.09081 -12.85209 -12.84751 -12.66004 -12.39544 -12.10459 -12.05470 -11.90945 -11.88257 -11.66512 -11.57980 -11.38964 -11.12501 -11.03332 -10.80665 -10.76723 -10.59371 -10.33945 -10.15882 -9.31972 -8.72873 -7.89818 -5.13315 0.46484 1.20198 1.39222 1.39620 1.44950 1.50867 2.05824 2.39298 2.57130 3.12643 3.41038 3.47208 3.67601 3.74251 3.89969 3.94404 4.04944 4.09581 4.15512 4.22260 4.29494 4.34419 4.38532 4.41580 4.43560 4.58967 4.67064 4.67672 4.81265 4.86098 4.92373 4.96989 5.05619 5.06374 5.10430 5.12254 5.16151 5.19609 5.27429 5.28292 5.30047 5.43113 5.46297 5.49223 5.56692 5.64661 5.73862 5.83120 5.99121 6.33441 6.46871 7.03133 7.35143 7.38733 8.24118 8.47731 9.34799 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008474 B = 0.004767 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.247339 B = 5872.753323 C = 7802.279410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.306 5.306 3 C 0.203 3.797 4 N -0.498 5.498 5 C 0.131 3.869 6 C 0.558 3.442 7 O -0.486 6.486 8 N -0.586 5.586 9 C 0.082 3.918 10 C -0.130 4.130 11 C -0.111 4.111 12 C -0.131 4.131 13 C 0.183 3.817 14 H 0.097 0.903 15 C -0.065 4.065 16 C 0.190 3.810 17 N -0.728 5.728 18 C -0.233 4.233 19 H 0.059 0.941 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.973 3.027 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.276 1.276 26 C -0.076 4.076 27 C -0.146 4.146 28 C -0.126 4.126 29 N -0.303 5.303 30 H 0.102 0.898 31 H 0.149 0.851 32 H 0.086 0.914 33 H 0.284 0.716 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.023 0.977 43 H -0.013 1.013 44 H 0.374 0.626 45 H 0.249 0.751 46 H 0.043 0.957 47 H 0.045 0.955 48 H 0.101 0.899 49 H 0.056 0.944 50 H 0.087 0.913 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 29.293 -2.547 29.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.101 5.101 3 C -0.090 4.090 4 N -0.225 5.225 5 C -0.148 4.148 6 C 0.343 3.657 7 O -0.358 6.358 8 N -0.320 5.320 9 C -0.039 4.039 10 C -0.168 4.168 11 C -0.149 4.149 12 C -0.170 4.170 13 C 0.080 3.920 14 H 0.115 0.885 15 C -0.066 4.066 16 C 0.064 3.936 17 N -0.370 5.370 18 C -0.365 4.365 19 H 0.077 0.923 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.802 3.198 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.114 4.114 27 C -0.184 4.184 28 C -0.164 4.164 29 N -0.143 5.143 30 H 0.121 0.879 31 H 0.167 0.833 32 H 0.104 0.896 33 H 0.299 0.701 34 H 0.149 0.851 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.040 0.960 43 H 0.005 0.995 44 H 0.208 0.792 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.119 0.881 49 H 0.074 0.926 50 H 0.106 0.894 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.570 28.136 -2.424 28.246 hybrid contribution -1.138 -1.342 0.510 1.832 sum -1.708 26.794 -1.914 26.917 Atomic orbital electron populations 1.22688 0.69662 1.07584 1.06364 1.47736 1.10734 1.03119 1.48479 1.27689 0.85022 0.97506 0.98804 1.70993 1.21436 1.07783 1.22277 1.23792 0.91948 0.90381 1.08665 1.16862 0.82239 0.85896 0.80706 1.91230 1.85172 1.14046 1.45350 1.47639 1.03175 1.11635 1.69579 1.22714 1.04520 0.78875 0.97824 1.21919 0.95810 1.01918 0.97118 1.21515 0.97377 0.92964 1.03021 1.22001 0.99336 0.98780 0.96855 1.21022 0.84856 0.87021 0.99052 0.88546 1.22035 0.95664 0.94119 0.94782 1.20795 0.93222 0.85640 0.93969 1.42521 1.69378 1.14562 1.10574 1.19525 1.28398 0.96838 0.91767 0.92264 1.25496 1.03812 0.98865 0.99089 1.69841 1.53982 1.17140 1.21438 0.85211 0.78396 0.77590 0.78608 1.21183 1.21575 1.20232 1.22646 0.94627 0.99303 0.94857 1.23134 0.97675 1.01516 0.96050 1.22870 0.98256 0.98946 0.96374 1.74388 1.03785 1.15954 1.20212 0.87913 0.83310 0.89553 0.70082 0.85113 0.90294 0.93980 0.88115 0.90608 0.89901 0.93717 0.89707 0.95983 0.99532 0.79232 0.94257 0.93821 0.93650 0.88070 0.92563 0.89422 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 11.38 127.77 1.45 2.10 16 2 N -0.31 -6.13 3.72 -373.47 -1.39 -7.51 16 3 C 0.20 3.01 12.62 180.30 2.27 5.29 16 4 N -0.50 -11.85 7.87 -193.03 -1.52 -13.36 16 5 C 0.13 4.43 7.65 137.13 1.05 5.48 16 6 C 0.56 21.49 5.83 86.80 0.51 22.00 16 7 O -0.49 -23.32 8.05 -3.89 -0.03 -23.35 16 8 N -0.59 -17.85 2.96 -798.37 -2.36 -20.21 16 9 C 0.08 1.81 6.07 86.36 0.52 2.33 16 10 C -0.13 -2.43 6.08 30.67 0.19 -2.24 16 11 C -0.11 -2.02 5.88 30.62 0.18 -1.84 16 12 C -0.13 -3.41 5.02 30.67 0.15 -3.26 16 13 C 0.18 5.46 2.30 44.97 0.10 5.56 16 14 H 0.10 2.43 7.33 -2.39 -0.02 2.42 16 15 C -0.07 -2.56 0.27 -51.65 -0.01 -2.58 16 16 C 0.19 9.50 4.05 86.38 0.35 9.85 16 17 N -0.73 -43.77 4.71 -343.45 -1.62 -45.39 16 18 C -0.23 -15.07 9.99 84.03 0.84 -14.24 16 19 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 20 C -0.08 -5.24 5.50 84.86 0.47 -4.77 16 21 N -0.97 -65.92 13.06 21.65 0.28 -65.64 16 22 Si 0.97 51.45 29.55 68.60 2.03 53.48 16 23 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.29 -15.06 7.11 99.48 0.71 -14.36 16 25 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 26 C -0.08 -3.27 4.51 31.18 0.14 -3.13 16 27 C -0.15 -5.00 7.74 31.18 0.24 -4.76 16 28 C -0.13 -4.67 6.91 31.12 0.22 -4.46 16 29 N -0.30 -10.28 12.09 -52.44 -0.63 -10.91 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.28 0.14 8.06 -2.91 -0.02 0.11 16 34 H 0.13 3.02 4.18 -16.10 -0.07 2.95 16 35 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.04 1.44 6.47 -2.38 -0.02 1.42 16 41 H 0.08 2.00 7.79 -2.39 -0.02 1.99 16 42 H 0.02 1.24 5.13 -28.73 -0.15 1.09 16 43 H -0.01 -0.65 6.95 -2.38 -0.02 -0.66 16 44 H 0.37 23.67 4.99 -92.70 -0.46 23.21 16 45 H 0.25 16.23 8.31 -92.70 -0.77 15.46 16 46 H 0.04 2.35 6.06 -2.39 -0.01 2.34 16 47 H 0.04 1.93 6.15 -2.39 -0.01 1.91 16 48 H 0.10 2.73 7.62 -2.39 -0.02 2.72 16 49 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.09 2.60 7.75 -2.39 -0.02 2.58 16 51 H 0.05 2.42 7.11 -2.39 -0.02 2.40 16 Total: -1.00 -93.85 380.12 3.73 -90.12 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.30 Total: 31.44 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 8.67 Total: 11.34 kcal Atomic # 7 Polarization: -155.79 SS G_CDS: -7.24 Total: -163.03 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.03 Total: -23.35 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.03 Total: 53.48 kcal Total: -93.85 3.73 -90.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105535268.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.822 kcal (2) G-P(sol) polarization free energy of solvation -93.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds