Wall clock time and date at job start Wed Apr 1 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.28519 * 124.44333 * 2 1 4 4 C 1.31130 * 109.05520 * 179.73517 * 3 2 1 5 5 C 1.40918 * 105.77746 * 0.42374 * 4 3 2 6 6 C 1.47807 * 127.23364 * 179.84116 * 5 4 3 7 7 O 1.21556 * 120.00130 * 6.56908 * 6 5 4 8 8 N 1.34770 * 119.99768 * 186.56538 * 6 5 4 9 9 C 1.46926 * 120.63456 * 7.45338 * 8 6 5 10 10 C 1.53194 * 108.77820 * 126.38741 * 9 8 6 11 11 C 1.53037 * 109.31121 * 54.63877 * 10 9 8 12 12 C 1.53043 * 109.53566 * 298.63123 * 11 10 9 13 13 C 1.46931 * 120.63240 * 187.44734 * 8 6 5 14 14 H 1.09001 * 109.70272 * 113.75251 * 13 8 6 15 15 C 1.52997 * 109.58472 * 353.40135 * 13 8 6 16 16 C 1.53001 * 112.85300 * 296.99667 * 15 13 8 17 17 N 1.46498 * 109.47604 * 162.00695 * 16 15 13 18 18 C 1.36933 * 120.00117 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99910 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00156 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00070 * 359.72907 * 20 18 17 22 22 Si 1.86803 * 120.00272 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46700 * 90.00015 * 22 20 18 24 24 H 1.48498 * 109.47358 * 209.99930 * 22 20 18 25 25 H 1.48500 * 109.47017 * 330.00301 * 22 20 18 26 26 C 1.53781 * 113.68996 * 68.26268 * 15 13 8 27 27 C 1.53781 * 87.08329 * 89.12937 * 26 15 13 28 28 C 1.53781 * 87.08017 * 25.42963 * 27 26 15 29 29 N 1.28589 * 124.44422 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47068 * 269.97850 * 1 2 3 31 31 H 1.08997 * 109.47040 * 29.98143 * 1 2 3 32 32 H 1.09006 * 109.46683 * 149.98202 * 1 2 3 33 33 H 1.08004 * 127.10710 * 180.29515 * 4 3 2 34 34 H 1.09008 * 109.58629 * 6.60297 * 9 8 6 35 35 H 1.08995 * 109.70851 * 246.24508 * 9 8 6 36 36 H 1.09006 * 109.49866 * 294.68628 * 10 9 8 37 37 H 1.09003 * 109.49598 * 174.59097 * 10 9 8 38 38 H 1.08997 * 109.45867 * 178.61633 * 11 10 9 39 39 H 1.08998 * 109.45978 * 58.65528 * 11 10 9 40 40 H 1.08993 * 109.50245 * 301.41533 * 12 11 10 41 41 H 1.08999 * 109.52304 * 181.33437 * 12 11 10 42 42 H 1.09008 * 109.46903 * 42.00510 * 16 15 13 43 43 H 1.09000 * 109.46740 * 282.01378 * 16 15 13 44 44 H 0.96996 * 119.99933 * 359.97438 * 17 16 15 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.09006 * 113.61428 * 203.67550 * 26 15 13 47 47 H 1.09002 * 113.62041 * 334.57477 * 26 15 13 48 48 H 1.08999 * 113.60929 * 270.88486 * 27 26 15 49 49 H 1.08994 * 113.69607 * 139.99182 * 27 26 15 50 50 H 1.08999 * 113.61659 * 220.01869 * 28 27 26 51 51 H 1.09007 * 113.61020 * 89.11594 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1920 1.0599 0.0000 4 6 3.4563 0.7119 0.0057 5 6 3.4659 -0.6972 -0.0006 6 6 4.6487 -1.5835 -0.0010 7 8 5.7619 -1.1116 0.1249 8 7 4.4931 -2.9149 -0.1409 9 6 3.1765 -3.4857 -0.4562 10 6 3.3086 -4.3746 -1.6968 11 6 4.4044 -5.4160 -1.4589 12 6 5.7415 -4.7082 -1.2272 13 6 5.6369 -3.8232 0.0188 14 1 5.4897 -4.4481 0.8996 15 6 6.9214 -3.0073 0.1776 16 6 7.2455 -2.1630 -1.0565 17 7 8.2028 -1.1151 -0.6937 18 6 8.6431 -0.2315 -1.6427 19 1 8.2842 -0.3069 -2.6585 20 6 9.5497 0.7617 -1.2988 21 7 9.9823 0.8575 -0.0594 22 14 10.1508 1.9667 -2.5935 23 1 9.2499 3.1467 -2.6276 24 1 11.5294 2.4058 -2.2590 25 1 10.1508 1.3054 -3.9231 26 6 6.9955 -2.2222 1.4978 27 6 7.6496 -3.4709 2.1125 28 6 8.1144 -3.8305 0.6914 29 7 2.1924 -1.0604 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8899 -0.5142 33 1 4.3130 1.3695 0.0117 34 1 2.4681 -2.6817 -0.6564 35 1 2.8237 -4.0824 0.3849 36 1 3.5712 -3.7603 -2.5582 37 1 2.3612 -4.8798 -1.8850 38 1 4.4837 -6.0654 -2.3307 39 1 4.1533 -6.0137 -0.5827 40 1 5.9812 -4.0909 -2.0929 41 1 6.5261 -5.4506 -1.0813 42 1 6.3311 -1.7050 -1.4337 43 1 7.6783 -2.7992 -1.8285 44 1 8.5249 -1.0472 0.2187 45 1 10.6161 1.5513 0.1808 46 1 7.6585 -1.3581 1.4554 47 1 6.0190 -1.9873 1.9216 48 1 6.9331 -4.1785 2.5297 49 1 8.4683 -3.2451 2.7957 50 1 8.0414 -4.8940 0.4641 51 1 9.0834 -3.4060 0.4285 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105568637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:46 Heat of formation + Delta-G solvation = 184.489864 kcal Electronic energy + Delta-G solvation = -33593.327195 eV Core-core repulsion = 29534.773247 eV Total energy + Delta-G solvation = -4058.553948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.61631 -41.10519 -37.74768 -37.17880 -33.91205 -33.69055 -33.17463 -32.16908 -31.15080 -30.48713 -28.18321 -26.78617 -25.36944 -25.20625 -23.67408 -23.50662 -22.31536 -21.91168 -21.58996 -20.64492 -19.48424 -17.45205 -17.28092 -17.00104 -16.97754 -16.52846 -15.78453 -15.21957 -14.84530 -14.70290 -14.50533 -14.23077 -14.07112 -13.88287 -13.77315 -13.34828 -13.32964 -13.19551 -13.03704 -12.64718 -12.36413 -12.11328 -11.82606 -11.74850 -11.50171 -11.24651 -11.19071 -10.80984 -10.78150 -10.74706 -10.60796 -10.56246 -10.30026 -10.06552 -9.91179 -9.87320 -9.50180 -9.33045 -9.21725 -9.20048 -8.83091 -8.50950 -8.08273 -6.50026 -5.51211 -2.73256 1.38963 2.07465 2.10814 3.14255 3.56022 3.57305 3.62084 3.63553 3.93665 4.58430 4.69939 4.77647 4.81597 4.84694 4.92290 4.95987 4.99958 5.10947 5.21082 5.26555 5.38125 5.40184 5.43986 5.58952 5.62932 5.71512 5.72810 5.76643 5.84074 5.86479 5.92572 5.97973 6.08204 6.13073 6.18971 6.19606 6.38591 6.45355 6.55958 6.57697 6.63033 6.66072 6.75437 6.87824 6.97964 7.21240 7.33912 7.38602 7.66425 7.92321 8.14223 8.59598 8.70390 9.80469 10.48176 10.82128 11.72883 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.004782 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.071344 B = 5853.761780 C = 7696.262635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.156 5.156 3 N -0.294 5.294 4 C 0.038 3.962 5 C -0.026 4.026 6 C 0.562 3.438 7 O -0.429 6.429 8 N -0.597 5.597 9 C 0.094 3.906 10 C -0.134 4.134 11 C -0.118 4.118 12 C -0.133 4.133 13 C 0.181 3.819 14 H 0.069 0.931 15 C -0.075 4.075 16 C 0.192 3.808 17 N -0.715 5.715 18 C -0.216 4.216 19 H 0.062 0.938 20 C -0.020 4.020 21 N -0.937 5.937 22 Si 0.899 3.101 23 H -0.293 1.293 24 H -0.294 1.294 25 H -0.286 1.286 26 C -0.086 4.086 27 C -0.162 4.162 28 C -0.129 4.129 29 N -0.263 5.263 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.210 0.790 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.031 0.969 43 H -0.008 1.008 44 H 0.384 0.616 45 H 0.250 0.750 46 H 0.104 0.896 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.053 0.947 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.255 -11.430 1.738 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.058 5.058 3 N -0.134 5.134 4 C -0.145 4.145 5 C -0.188 4.188 6 C 0.346 3.654 7 O -0.297 6.297 8 N -0.333 5.333 9 C -0.030 4.030 10 C -0.172 4.172 11 C -0.156 4.156 12 C -0.171 4.171 13 C 0.078 3.922 14 H 0.087 0.913 15 C -0.076 4.076 16 C 0.065 3.935 17 N -0.361 5.361 18 C -0.349 4.349 19 H 0.080 0.920 20 C -0.215 4.215 21 N -0.588 5.588 22 Si 0.731 3.269 23 H -0.221 1.221 24 H -0.221 1.221 25 H -0.212 1.212 26 C -0.124 4.124 27 C -0.200 4.200 28 C -0.167 4.167 29 N -0.111 5.111 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.227 0.773 34 H 0.135 0.865 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.010 0.990 44 H 0.222 0.778 45 H 0.060 0.940 46 H 0.122 0.878 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.071 0.929 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.967 -11.037 1.661 24.640 hybrid contribution 1.124 0.704 -0.484 1.412 sum -20.843 -10.332 1.177 23.293 Atomic orbital electron populations 1.22149 0.70387 1.05867 1.04970 1.48126 1.08964 0.99689 1.48979 1.74016 1.04078 1.15366 1.19940 1.24962 0.94100 0.94056 1.01371 1.23421 0.91143 0.95013 1.09259 1.16805 0.86152 0.81408 0.81063 1.91309 1.20818 1.74617 1.42955 1.47615 1.09577 1.04954 1.71159 1.22234 0.85210 0.99050 0.96502 1.21924 0.98943 0.97802 0.98574 1.21519 0.95097 0.97509 1.01444 1.21995 0.97121 0.98982 0.99008 1.20940 0.84597 0.89704 0.96931 0.91304 1.22111 0.92056 0.95383 0.98047 1.20519 0.92504 0.88892 0.91574 1.42446 1.50104 1.33184 1.10368 1.19205 1.18182 1.06379 0.91085 0.91963 1.24599 1.01064 0.99688 0.96132 1.69654 1.36644 1.36119 1.16379 0.86287 0.77831 0.81787 0.80966 1.22144 1.22113 1.21166 1.22947 0.99819 0.96427 0.93171 1.23087 1.00292 0.99954 0.96678 1.23001 0.99347 0.98423 0.95908 1.74216 1.03370 1.14776 1.18773 0.89194 0.87866 0.87943 0.77291 0.86548 0.92220 0.91643 0.91300 0.91981 0.92136 0.90652 0.90794 0.95217 0.99044 0.77799 0.93977 0.87782 0.93246 0.91803 0.92157 0.92852 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.59 11.55 59.85 0.69 1.29 16 2 N -0.16 -1.80 4.35 -16.63 -0.07 -1.88 16 3 N -0.29 -4.09 12.01 30.90 0.37 -3.72 16 4 C 0.04 0.59 12.05 -16.84 -0.20 0.39 16 5 C -0.03 -0.40 6.87 -82.68 -0.57 -0.96 16 6 C 0.56 9.55 5.79 -12.35 -0.07 9.48 16 7 O -0.43 -8.80 7.71 5.32 0.04 -8.75 16 8 N -0.60 -8.56 2.92 -166.34 -0.49 -9.05 16 9 C 0.09 1.06 6.11 -3.71 -0.02 1.04 16 10 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16 11 C -0.12 -1.17 5.88 -26.69 -0.16 -1.33 16 12 C -0.13 -1.68 5.07 -26.61 -0.14 -1.81 16 13 C 0.18 2.60 2.28 -67.60 -0.15 2.44 16 14 H 0.07 0.93 7.32 -51.93 -0.38 0.55 16 15 C -0.08 -1.33 0.25 -153.70 -0.04 -1.37 16 16 C 0.19 4.23 3.71 -4.04 -0.01 4.22 16 17 N -0.72 -19.05 4.49 -59.91 -0.27 -19.32 16 18 C -0.22 -6.38 9.99 -15.06 -0.15 -6.53 16 19 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 21 N -0.94 -29.49 13.06 55.49 0.72 -28.76 16 22 Si 0.90 23.55 29.55 -169.99 -5.02 18.53 16 23 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 24 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 C -0.09 -1.63 4.62 -25.92 -0.12 -1.75 16 27 C -0.16 -2.61 7.73 -25.92 -0.20 -2.81 16 28 C -0.13 -2.18 7.00 -25.92 -0.18 -2.36 16 29 N -0.26 -3.40 8.68 33.42 0.29 -3.11 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.21 3.21 8.06 -52.48 -0.42 2.78 16 34 H 0.12 1.36 4.23 -59.88 -0.25 1.10 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 1.11 6.81 -51.93 -0.35 0.75 16 41 H 0.07 0.88 7.54 -51.93 -0.39 0.49 16 42 H 0.03 0.70 5.26 -52.43 -0.28 0.43 16 43 H -0.01 -0.18 7.61 -51.93 -0.40 -0.57 16 44 H 0.38 10.72 4.98 -40.82 -0.20 10.51 16 45 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.10 2.42 5.43 -51.93 -0.28 2.13 16 47 H 0.05 0.93 6.49 -51.93 -0.34 0.59 16 48 H 0.06 0.90 7.61 -51.93 -0.40 0.50 16 49 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.05 0.77 7.47 -51.93 -0.39 0.39 16 51 H 0.09 1.79 7.97 -51.93 -0.41 1.38 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -34.95 380.78 -8.11 -43.06 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.84 Total: 9.54 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.58 Total: -2.27 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: 0.56 Total: -65.83 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.04 Total: -8.75 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.53 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.95 -8.11 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105568637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.547 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds