Wall clock time and date at job start Wed Apr 1 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.28519 * 124.44333 * 2 1 4 4 C 1.31130 * 109.05520 * 179.73517 * 3 2 1 5 5 C 1.40918 * 105.77746 * 0.42374 * 4 3 2 6 6 C 1.47807 * 127.23364 * 179.84116 * 5 4 3 7 7 O 1.21556 * 120.00130 * 6.56908 * 6 5 4 8 8 N 1.34770 * 119.99768 * 186.56538 * 6 5 4 9 9 C 1.46926 * 120.63456 * 7.45338 * 8 6 5 10 10 C 1.53194 * 108.77820 * 126.38741 * 9 8 6 11 11 C 1.53037 * 109.31121 * 54.63877 * 10 9 8 12 12 C 1.53043 * 109.53566 * 298.63123 * 11 10 9 13 13 C 1.46931 * 120.63240 * 187.44734 * 8 6 5 14 14 H 1.09001 * 109.70272 * 113.75251 * 13 8 6 15 15 C 1.52997 * 109.58472 * 353.40135 * 13 8 6 16 16 C 1.53001 * 112.85300 * 296.99667 * 15 13 8 17 17 N 1.46498 * 109.47604 * 162.00695 * 16 15 13 18 18 C 1.36933 * 120.00117 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99910 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00156 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00070 * 359.72907 * 20 18 17 22 22 Si 1.86803 * 120.00272 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46700 * 90.00015 * 22 20 18 24 24 H 1.48498 * 109.47358 * 209.99930 * 22 20 18 25 25 H 1.48500 * 109.47017 * 330.00301 * 22 20 18 26 26 C 1.53781 * 113.68996 * 68.26268 * 15 13 8 27 27 C 1.53781 * 87.08329 * 89.12937 * 26 15 13 28 28 C 1.53781 * 87.08017 * 25.42963 * 27 26 15 29 29 N 1.28589 * 124.44422 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47068 * 269.97850 * 1 2 3 31 31 H 1.08997 * 109.47040 * 29.98143 * 1 2 3 32 32 H 1.09006 * 109.46683 * 149.98202 * 1 2 3 33 33 H 1.08004 * 127.10710 * 180.29515 * 4 3 2 34 34 H 1.09008 * 109.58629 * 6.60297 * 9 8 6 35 35 H 1.08995 * 109.70851 * 246.24508 * 9 8 6 36 36 H 1.09006 * 109.49866 * 294.68628 * 10 9 8 37 37 H 1.09003 * 109.49598 * 174.59097 * 10 9 8 38 38 H 1.08997 * 109.45867 * 178.61633 * 11 10 9 39 39 H 1.08998 * 109.45978 * 58.65528 * 11 10 9 40 40 H 1.08993 * 109.50245 * 301.41533 * 12 11 10 41 41 H 1.08999 * 109.52304 * 181.33437 * 12 11 10 42 42 H 1.09008 * 109.46903 * 42.00510 * 16 15 13 43 43 H 1.09000 * 109.46740 * 282.01378 * 16 15 13 44 44 H 0.96996 * 119.99933 * 359.97438 * 17 16 15 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.09006 * 113.61428 * 203.67550 * 26 15 13 47 47 H 1.09002 * 113.62041 * 334.57477 * 26 15 13 48 48 H 1.08999 * 113.60929 * 270.88486 * 27 26 15 49 49 H 1.08994 * 113.69607 * 139.99182 * 27 26 15 50 50 H 1.08999 * 113.61659 * 220.01869 * 28 27 26 51 51 H 1.09007 * 113.61020 * 89.11594 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1920 1.0599 0.0000 4 6 3.4563 0.7119 0.0057 5 6 3.4659 -0.6972 -0.0006 6 6 4.6487 -1.5835 -0.0010 7 8 5.7619 -1.1116 0.1249 8 7 4.4931 -2.9149 -0.1409 9 6 3.1765 -3.4857 -0.4562 10 6 3.3086 -4.3746 -1.6968 11 6 4.4044 -5.4160 -1.4589 12 6 5.7415 -4.7082 -1.2272 13 6 5.6369 -3.8232 0.0188 14 1 5.4897 -4.4481 0.8996 15 6 6.9214 -3.0073 0.1776 16 6 7.2455 -2.1630 -1.0565 17 7 8.2028 -1.1151 -0.6937 18 6 8.6431 -0.2315 -1.6427 19 1 8.2842 -0.3069 -2.6585 20 6 9.5497 0.7617 -1.2988 21 7 9.9823 0.8575 -0.0594 22 14 10.1508 1.9667 -2.5935 23 1 9.2499 3.1467 -2.6276 24 1 11.5294 2.4058 -2.2590 25 1 10.1508 1.3054 -3.9231 26 6 6.9955 -2.2222 1.4978 27 6 7.6496 -3.4709 2.1125 28 6 8.1144 -3.8305 0.6914 29 7 2.1924 -1.0604 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8899 -0.5142 33 1 4.3130 1.3695 0.0117 34 1 2.4681 -2.6817 -0.6564 35 1 2.8237 -4.0824 0.3849 36 1 3.5712 -3.7603 -2.5582 37 1 2.3612 -4.8798 -1.8850 38 1 4.4837 -6.0654 -2.3307 39 1 4.1533 -6.0137 -0.5827 40 1 5.9812 -4.0909 -2.0929 41 1 6.5261 -5.4506 -1.0813 42 1 6.3311 -1.7050 -1.4337 43 1 7.6783 -2.7992 -1.8285 44 1 8.5249 -1.0472 0.2187 45 1 10.6161 1.5513 0.1808 46 1 7.6585 -1.3581 1.4554 47 1 6.0190 -1.9873 1.9216 48 1 6.9331 -4.1785 2.5297 49 1 8.4683 -3.2451 2.7957 50 1 8.0414 -4.8940 0.4641 51 1 9.0834 -3.4060 0.4285 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105568637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:45 Heat of formation + Delta-G solvation = 160.967744 kcal Electronic energy + Delta-G solvation = -33594.347191 eV Core-core repulsion = 29534.773247 eV Total energy + Delta-G solvation = -4059.573944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.67606 -42.41046 -39.11191 -38.28645 -35.79950 -34.84176 -34.22010 -33.21767 -32.81333 -32.02930 -29.05903 -28.38745 -26.65490 -26.62695 -25.20013 -24.63334 -23.83077 -23.11832 -22.86345 -21.71161 -20.58054 -19.14895 -18.74820 -18.28501 -17.97853 -17.74645 -17.06647 -16.58615 -16.50268 -16.14633 -15.76874 -15.67199 -15.24391 -15.11222 -15.02363 -14.68702 -14.39860 -14.18041 -13.98373 -13.88552 -13.60417 -13.26502 -13.19638 -13.04922 -12.91656 -12.84258 -12.74600 -12.36952 -12.29271 -12.02418 -11.92036 -11.83842 -11.71193 -11.58923 -11.48336 -11.10702 -11.08091 -10.89274 -10.74589 -10.64802 -10.28189 -10.12874 -9.31821 -8.68275 -7.84066 -5.05963 0.29321 0.89214 1.30831 1.44030 1.47155 1.54958 2.03746 2.31814 2.61707 2.89481 3.47263 3.54691 3.72823 3.87014 3.92837 3.98987 4.07307 4.12458 4.16993 4.21796 4.29440 4.32221 4.33508 4.41433 4.43495 4.50099 4.61634 4.65238 4.68197 4.80806 4.89368 4.94877 4.96809 5.03646 5.08195 5.11393 5.13129 5.16713 5.20685 5.27814 5.29828 5.33308 5.44776 5.51445 5.56007 5.64451 5.70198 5.86371 5.90424 6.39668 6.49247 7.05019 7.35861 7.45637 8.33332 8.56100 9.40755 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.004782 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.071344 B = 5853.761780 C = 7696.262635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.138 5.138 3 N -0.297 5.297 4 C 0.014 3.986 5 C -0.050 4.050 6 C 0.558 3.442 7 O -0.481 6.481 8 N -0.593 5.593 9 C 0.090 3.910 10 C -0.130 4.130 11 C -0.111 4.111 12 C -0.131 4.131 13 C 0.183 3.817 14 H 0.095 0.905 15 C -0.065 4.065 16 C 0.200 3.800 17 N -0.723 5.723 18 C -0.225 4.225 19 H 0.059 0.941 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.966 3.034 23 H -0.291 1.291 24 H -0.294 1.294 25 H -0.274 1.274 26 C -0.085 4.085 27 C -0.145 4.145 28 C -0.127 4.127 29 N -0.243 5.243 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.195 0.805 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.019 0.981 43 H -0.021 1.021 44 H 0.376 0.624 45 H 0.247 0.753 46 H 0.052 0.948 47 H 0.046 0.954 48 H 0.100 0.900 49 H 0.055 0.945 50 H 0.087 0.913 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.492 -14.159 1.532 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.042 5.042 3 N -0.139 5.139 4 C -0.168 4.168 5 C -0.211 4.211 6 C 0.343 3.657 7 O -0.353 6.353 8 N -0.327 5.327 9 C -0.032 4.032 10 C -0.168 4.168 11 C -0.149 4.149 12 C -0.169 4.169 13 C 0.081 3.919 14 H 0.113 0.887 15 C -0.065 4.065 16 C 0.074 3.926 17 N -0.367 5.367 18 C -0.358 4.358 19 H 0.077 0.923 20 C -0.271 4.271 21 N -0.624 5.624 22 Si 0.796 3.204 23 H -0.219 1.219 24 H -0.220 1.220 25 H -0.199 1.199 26 C -0.123 4.123 27 C -0.182 4.182 28 C -0.165 4.165 29 N -0.093 5.093 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.212 0.788 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.036 0.964 43 H -0.004 1.004 44 H 0.212 0.788 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.118 0.882 49 H 0.074 0.926 50 H 0.106 0.894 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.252 -13.819 1.425 28.821 hybrid contribution 1.904 1.564 -0.433 2.502 sum -23.347 -12.255 0.992 26.387 Atomic orbital electron populations 1.22808 0.66811 1.08142 1.07196 1.48834 1.10709 0.98795 1.45879 1.73993 1.03542 1.16207 1.20163 1.24829 0.94626 0.94381 1.02950 1.23181 0.91757 0.94666 1.11465 1.17105 0.86015 0.82385 0.80169 1.91296 1.22642 1.75562 1.45762 1.47757 1.10922 1.04110 1.69951 1.22461 0.83348 0.99330 0.98062 1.21918 1.00574 0.97450 0.96870 1.21503 0.92923 0.97365 1.03077 1.21986 0.99603 0.98625 0.96718 1.21008 0.82667 0.89302 0.98959 0.88727 1.22027 0.94448 0.94967 0.95079 1.20540 0.90624 0.88015 0.93426 1.42622 1.50724 1.33804 1.09532 1.19545 1.17838 1.06918 0.91478 0.92266 1.25383 1.01768 1.01678 0.98243 1.69832 1.37413 1.36836 1.18311 0.85224 0.76933 0.79325 0.78879 1.21873 1.22033 1.19873 1.22686 0.98714 0.95911 0.94999 1.23050 1.00449 0.98693 0.96033 1.22890 0.97134 0.99935 0.96494 1.74205 1.02240 1.14851 1.18030 0.86913 0.86180 0.85227 0.78799 0.86937 0.89921 0.93731 0.88189 0.90570 0.89942 0.93608 0.89581 0.96404 1.00395 0.78776 0.94441 0.92975 0.93491 0.88193 0.92569 0.89424 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 11.55 127.77 1.48 2.16 16 2 N -0.14 -2.94 4.35 -206.53 -0.90 -3.84 16 3 N -0.30 -8.23 12.01 -56.17 -0.67 -8.90 16 4 C 0.01 0.45 12.05 85.45 1.03 1.48 16 5 C -0.05 -1.59 6.87 42.24 0.29 -1.30 16 6 C 0.56 19.60 5.79 86.78 0.50 20.10 16 7 O -0.48 -21.11 7.71 -3.89 -0.03 -21.14 16 8 N -0.59 -16.39 2.92 -798.45 -2.33 -18.72 16 9 C 0.09 1.78 6.11 86.36 0.53 2.30 16 10 C -0.13 -2.14 6.08 30.67 0.19 -1.96 16 11 C -0.11 -1.76 5.88 30.62 0.18 -1.58 16 12 C -0.13 -3.03 5.07 30.67 0.16 -2.87 16 13 C 0.18 4.94 2.28 44.97 0.10 5.04 16 14 H 0.10 2.15 7.32 -2.39 -0.02 2.13 16 15 C -0.06 -2.33 0.25 -51.66 -0.01 -2.34 16 16 C 0.20 9.33 3.71 86.38 0.32 9.65 16 17 N -0.72 -41.13 4.49 -343.46 -1.54 -42.68 16 18 C -0.23 -13.95 9.99 84.03 0.84 -13.11 16 19 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 20 C -0.08 -4.95 5.50 84.86 0.47 -4.49 16 21 N -0.97 -64.08 13.06 21.65 0.28 -63.80 16 22 Si 0.97 50.16 29.55 68.60 2.03 52.19 16 23 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 24 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 25 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16 26 C -0.08 -3.37 4.62 31.12 0.14 -3.22 16 27 C -0.14 -4.55 7.73 31.12 0.24 -4.31 16 28 C -0.13 -4.26 7.00 31.12 0.22 -4.05 16 29 N -0.24 -5.94 8.68 -48.17 -0.42 -6.36 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.20 6.70 8.06 -2.91 -0.02 6.68 16 34 H 0.11 2.34 4.23 -12.67 -0.05 2.28 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 1.33 6.81 -2.39 -0.02 1.31 16 41 H 0.09 1.78 7.54 -2.39 -0.02 1.76 16 42 H 0.02 0.91 5.26 -10.39 -0.05 0.86 16 43 H -0.02 -1.03 7.61 -2.39 -0.02 -1.04 16 44 H 0.38 22.65 4.98 -92.71 -0.46 22.19 16 45 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 46 H 0.05 2.64 5.43 -2.38 -0.01 2.62 16 47 H 0.05 1.83 6.49 -2.39 -0.02 1.82 16 48 H 0.10 2.46 7.61 -2.39 -0.02 2.44 16 49 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.09 2.33 7.47 -2.39 -0.02 2.31 16 51 H 0.05 2.19 7.97 -2.38 -0.02 2.17 16 Total: -1.00 -82.04 380.78 3.49 -78.55 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.41 Total: 33.17 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 6.67 Total: 1.52 kcal Atomic # 7 Polarization: -138.71 SS G_CDS: -5.58 Total: -144.29 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.03 Total: -21.14 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.03 Total: 52.19 kcal Total: -82.04 3.49 -78.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105568637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.522 kcal (2) G-P(sol) polarization free energy of solvation -82.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds