Wall clock time and date at job start Wed Apr 1 2020 05:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47366 * 2 1 4 4 N 1.28517 * 124.44713 * 270.31519 * 3 2 1 5 5 C 1.31128 * 109.06156 * 180.17777 * 4 3 2 6 6 C 1.50703 * 127.11336 * 179.83070 * 5 4 3 7 7 C 1.40923 * 105.77513 * 359.56580 * 5 4 3 8 8 C 1.47802 * 127.23567 * 180.25805 * 7 5 4 9 9 O 1.21551 * 120.00374 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99920 * 180.02562 * 8 7 5 11 11 C 1.48124 * 127.84045 * 359.68038 * 10 8 7 12 12 C 1.54705 * 104.50823 * 140.23558 * 11 10 8 13 13 H 1.08995 * 112.01494 * 262.66582 * 12 11 10 14 14 C 1.54158 * 109.51786 * 137.99489 * 12 11 10 15 15 C 1.54840 * 104.32863 * 270.97994 * 14 12 11 16 16 C 1.56259 * 103.32224 * 322.37705 * 15 14 12 17 17 C 1.54166 * 103.65501 * 37.03713 * 16 15 14 18 18 C 1.53002 * 111.81804 * 214.43294 * 17 16 15 19 19 N 1.46500 * 109.47367 * 298.61375 * 18 17 16 20 20 C 1.36940 * 120.00170 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99490 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00051 * 180.02562 * 20 19 18 23 23 N 1.31616 * 119.99996 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47337 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47556 * 119.99526 * 24 22 20 27 27 H 1.48504 * 109.47176 * 239.99671 * 24 22 20 28 28 C 1.48113 * 127.84593 * 180.02562 * 10 8 7 29 29 N 1.28590 * 124.44299 * 89.99641 * 3 2 1 30 30 H 1.09000 * 109.47091 * 300.00229 * 1 2 3 31 31 H 1.09008 * 109.47335 * 59.99920 * 1 2 3 32 32 H 1.08999 * 109.47694 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46919 * 240.00226 * 2 1 3 34 34 H 1.08997 * 109.46829 * 120.00575 * 2 1 3 35 35 H 1.09002 * 109.47152 * 269.68314 * 6 5 4 36 36 H 1.09001 * 109.46980 * 149.68414 * 6 5 4 37 37 H 1.09004 * 109.47113 * 29.68395 * 6 5 4 38 38 H 1.09004 * 110.39293 * 259.08075 * 11 10 8 39 39 H 1.09000 * 110.39613 * 21.47655 * 11 10 8 40 40 H 1.09001 * 110.46295 * 29.69555 * 14 12 11 41 41 H 1.09003 * 110.45790 * 152.27308 * 14 12 11 42 42 H 1.08997 * 110.75849 * 80.12264 * 15 14 12 43 43 H 1.08994 * 110.76052 * 203.31556 * 15 14 12 44 44 H 1.08999 * 109.43322 * 279.18652 * 16 15 14 45 45 H 1.09000 * 112.13030 * 156.18972 * 16 15 14 46 46 H 1.09001 * 109.47505 * 58.62106 * 18 17 16 47 47 H 1.08998 * 109.46537 * 178.61730 * 18 17 16 48 48 H 0.97003 * 119.99534 * 0.02562 * 19 18 17 49 49 H 0.97000 * 120.00082 * 180.02562 * 23 22 20 50 50 H 1.09001 * 110.39050 * 338.52462 * 28 10 8 51 51 H 1.08999 * 110.39513 * 100.80038 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2552 2.0685 -1.0598 5 6 2.6821 3.2585 -0.7119 6 6 3.0807 4.3857 -1.6294 7 6 2.6853 3.2676 0.6973 8 6 3.0797 4.3827 1.5836 9 8 3.4519 5.4365 1.1057 10 7 3.0266 4.2311 2.9217 11 6 2.5976 3.0360 3.6845 12 6 3.5884 2.9567 4.8700 13 1 4.4028 2.2588 4.6759 14 6 2.8219 2.5989 6.1588 15 6 2.3946 3.9677 6.7430 16 6 3.6203 4.8877 6.4382 17 6 4.1012 4.4069 5.0546 18 6 5.6225 4.4966 4.9186 19 7 6.0443 5.8922 5.0621 20 6 7.3713 6.2188 4.9757 21 1 8.1070 5.4475 4.8022 22 6 7.7710 7.5411 5.1123 23 7 6.8744 8.4810 5.3242 24 14 9.5811 7.9867 4.9937 25 1 10.3788 6.7575 4.7526 26 1 9.7845 8.9373 3.8711 27 1 10.0193 8.6194 6.2637 28 6 3.3772 5.2239 3.9634 29 7 2.2608 2.0669 1.0605 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.1456 4.3149 -1.8506 36 1 2.8729 5.3396 -1.1445 37 1 2.5116 4.3179 -2.5567 38 1 1.5775 3.1628 4.0470 39 1 2.6732 2.1425 3.0648 40 1 1.9458 1.9939 5.9256 41 1 3.4741 2.0737 6.8566 42 1 1.5088 4.3459 6.2329 43 1 2.2178 3.8917 7.8158 44 1 4.3933 4.7225 7.1888 45 1 3.3436 5.9413 6.4004 46 1 6.0930 3.8931 5.6948 47 1 5.9220 4.1255 3.9384 48 1 5.3834 6.5849 5.2184 49 1 7.1536 9.4051 5.4193 50 1 4.0422 5.9846 3.5545 51 1 2.4760 5.6855 4.3669 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112592432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:55 Heat of formation + Delta-G solvation = 87.465610 kcal Electronic energy + Delta-G solvation = -31922.426319 eV Core-core repulsion = 27859.665083 eV Total energy + Delta-G solvation = -4062.761235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.78258 -40.39977 -38.38159 -35.34261 -34.75034 -34.27216 -33.04502 -31.71641 -31.43401 -29.69055 -29.08146 -28.09844 -26.27884 -25.45383 -24.66151 -23.62301 -22.59687 -21.94990 -21.19823 -20.03707 -19.66452 -18.45387 -17.52619 -17.20444 -16.87448 -16.51539 -15.81128 -15.47965 -15.02680 -14.89063 -14.42258 -14.18117 -14.09127 -13.71743 -13.60881 -13.31295 -13.12266 -13.06481 -12.90799 -12.81977 -12.58422 -12.57614 -12.34931 -11.92223 -11.85447 -11.62747 -11.52039 -11.14181 -11.10374 -10.87172 -10.79551 -10.68574 -10.49947 -10.40581 -10.31770 -10.27042 -10.17441 -9.86186 -9.84494 -9.56429 -9.32325 -8.80137 -8.47545 -6.83251 -5.68706 -2.96514 1.24928 1.83514 1.91791 3.02842 3.36209 3.49154 3.54684 3.56872 3.73202 4.33600 4.34823 4.51482 4.58861 4.62486 4.68107 4.69009 4.84212 4.88320 5.04841 5.17141 5.30726 5.34954 5.39857 5.41783 5.48898 5.52439 5.58281 5.62943 5.65092 5.66520 5.68555 5.78326 5.85810 5.88793 6.00372 6.07978 6.10818 6.21208 6.23948 6.29111 6.34576 6.34689 6.47952 6.58285 6.59224 6.67430 6.83799 6.91522 7.69698 7.78108 8.00024 8.29917 8.50150 9.61637 10.18956 10.54099 11.54326 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.003231 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.453986 B = 8665.284509 C =10305.266260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 N -0.146 5.146 4 N -0.294 5.294 5 C 0.062 3.938 6 C -0.069 4.069 7 C -0.035 4.035 8 C 0.623 3.377 9 O -0.518 6.518 10 N -0.605 5.605 11 C 0.103 3.897 12 C -0.097 4.097 13 H 0.085 0.915 14 C -0.112 4.112 15 C -0.126 4.126 16 C -0.105 4.105 17 C -0.075 4.075 18 C 0.173 3.827 19 N -0.728 5.728 20 C -0.235 4.235 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.293 1.293 28 C 0.116 3.884 29 N -0.249 5.249 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.021 0.979 47 H 0.017 0.983 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.100 0.900 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.731 -19.345 -6.968 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.048 5.048 4 N -0.135 5.135 5 C -0.102 4.102 6 C -0.128 4.128 7 C -0.198 4.198 8 C 0.408 3.592 9 O -0.392 6.392 10 N -0.337 5.337 11 C -0.020 4.020 12 C -0.117 4.117 13 H 0.104 0.896 14 C -0.150 4.150 15 C -0.163 4.163 16 C -0.142 4.142 17 C -0.076 4.076 18 C 0.045 3.955 19 N -0.373 5.373 20 C -0.367 4.367 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.220 1.220 28 C -0.005 4.005 29 N -0.097 5.097 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.039 0.961 47 H 0.035 0.965 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.119 0.881 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.797 -20.055 -7.375 27.180 hybrid contribution 1.072 1.136 0.043 1.563 sum -15.725 -18.919 -7.332 25.670 Atomic orbital electron populations 1.22189 0.92967 1.03952 1.03810 1.22056 0.96134 0.74256 1.06034 1.48148 1.44030 1.13278 0.99359 1.73916 1.19044 1.05224 1.15355 1.23273 1.00411 0.93840 0.92659 1.20252 1.02071 0.93827 0.96668 1.22948 1.09043 0.93532 0.94263 1.16155 0.78103 0.85054 0.79901 1.90837 1.47338 1.26892 1.74124 1.48675 1.64408 1.16786 1.03873 1.22803 0.97312 0.89255 0.92670 1.22757 0.97463 0.97058 0.94452 0.89629 1.22299 0.99278 0.97338 0.96086 1.22742 0.98300 0.95148 1.00145 1.22558 0.96992 0.99159 0.95539 1.22276 0.96922 0.93458 0.94926 1.20558 0.88868 0.88531 0.97495 1.42333 1.05835 1.02012 1.87095 1.19234 0.84228 0.92251 1.40966 0.91336 1.24703 0.97444 0.95817 1.02957 1.69659 1.31832 1.00100 1.56497 0.86143 0.85095 0.77992 0.77126 1.20669 1.21895 1.21978 1.22636 0.99325 0.91976 0.86599 1.74346 1.15468 1.04490 1.15354 0.91300 0.91362 0.89479 0.87206 0.87138 0.89920 0.88471 0.90791 0.91330 0.88611 0.91721 0.91340 0.92026 0.91695 0.90877 0.90784 0.96107 0.96542 0.78168 0.93631 0.88134 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.24 37.16 0.38 -0.44 16 2 C 0.13 0.81 7.24 -4.04 -0.03 0.78 16 3 N -0.15 -1.63 3.94 -10.62 -0.04 -1.67 16 4 N -0.29 -3.78 12.01 33.92 0.41 -3.37 16 5 C 0.06 0.87 7.39 -81.88 -0.61 0.27 16 6 C -0.07 -0.84 10.00 36.01 0.36 -0.48 16 7 C -0.04 -0.54 7.06 -82.68 -0.58 -1.12 16 8 C 0.62 11.02 7.92 -12.35 -0.10 10.93 16 9 O -0.52 -10.71 15.46 5.32 0.08 -10.63 16 10 N -0.60 -9.82 3.31 -170.30 -0.56 -10.38 16 11 C 0.10 1.31 6.14 -2.25 -0.01 1.30 16 12 C -0.10 -1.26 3.55 -88.10 -0.31 -1.58 16 13 H 0.09 1.13 7.88 -51.93 -0.41 0.72 16 14 C -0.11 -1.18 6.16 -25.16 -0.15 -1.34 16 15 C -0.13 -1.43 6.87 -24.01 -0.16 -1.60 16 16 C -0.10 -1.57 5.26 -24.37 -0.13 -1.70 16 17 C -0.07 -1.21 0.63 -152.17 -0.10 -1.30 16 18 C 0.17 3.59 5.16 -4.04 -0.02 3.57 16 19 N -0.73 -18.64 4.91 -59.91 -0.29 -18.94 16 20 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 24 Si 0.90 23.08 29.55 -169.99 -5.02 18.05 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 28 C 0.12 2.02 5.76 -2.45 -0.01 2.01 16 29 N -0.25 -3.25 9.25 33.42 0.31 -2.94 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.30 6.77 -51.93 -0.35 0.94 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 39 H 0.10 1.18 5.54 -51.93 -0.29 0.89 16 40 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.19 7.97 -51.93 -0.41 0.78 16 45 H 0.07 1.18 7.76 -51.93 -0.40 0.78 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.38 10.23 6.82 -40.82 -0.28 9.95 16 49 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 50 H 0.10 2.17 6.87 -51.93 -0.36 1.82 16 51 H 0.07 1.09 7.64 -51.93 -0.40 0.70 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -34.90 404.25 -8.36 -43.25 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.32 Total: 6.57 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.73 Total: 1.90 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: 0.54 Total: -65.24 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.90 -8.36 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112592432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.716 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds