Wall clock time and date at job start Wed Apr 1 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36745 * 127.13550 * 2 1 4 4 C 1.50691 * 126.34949 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47215 * 90.00176 * 4 3 2 6 6 C 1.53007 * 109.47268 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47237 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99631 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99918 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00173 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99898 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47132 * 89.99754 * 11 9 7 13 13 H 1.48501 * 109.47360 * 209.99887 * 11 9 7 14 14 H 1.48500 * 109.47149 * 329.99681 * 11 9 7 15 15 N 1.30295 * 107.30171 * 180.02562 * 3 2 1 16 16 N 1.28525 * 110.05448 * 359.72533 * 15 3 2 17 17 C 1.31220 * 109.86231 * 0.45327 * 16 15 3 18 18 N 1.38570 * 126.47540 * 179.82387 * 17 16 15 19 19 C 1.46911 * 111.00403 * 123.64506 * 18 17 16 20 20 C 1.53020 * 109.24034 * 173.46419 * 19 18 17 21 21 C 1.52713 * 109.65891 * 58.90935 * 20 19 18 22 22 H 1.09000 * 107.77116 * 185.61729 * 21 20 19 23 23 N 1.45475 * 110.69705 * 66.95551 * 21 20 19 24 24 C 1.33479 * 123.89525 * 217.68232 * 23 21 20 25 25 O 1.21283 * 118.28661 * 182.64493 * 24 23 21 26 26 C 1.50168 * 123.42762 * 2.67938 * 24 23 21 27 27 C 1.53059 * 110.03393 * 342.37048 * 26 24 23 28 28 C 1.52955 * 110.10412 * 304.17342 * 21 20 19 29 29 H 1.08998 * 109.67475 * 293.84806 * 28 21 20 30 30 C 1.47337 * 110.61907 * 358.93908 * 18 17 16 31 31 H 1.09002 * 109.46922 * 269.97855 * 1 2 3 32 32 H 1.08999 * 109.47276 * 29.96886 * 1 2 3 33 33 H 1.08996 * 109.47531 * 149.97271 * 1 2 3 34 34 H 1.09005 * 109.47607 * 210.00366 * 4 3 2 35 35 H 1.09005 * 109.47157 * 329.99966 * 4 3 2 36 36 H 1.09001 * 109.46962 * 299.99806 * 5 4 3 37 37 H 1.08995 * 109.47170 * 59.99838 * 5 4 3 38 38 H 1.09001 * 109.46708 * 299.99640 * 6 5 4 39 39 H 1.08995 * 109.47420 * 59.99669 * 6 5 4 40 40 H 0.97001 * 119.99949 * 180.02562 * 10 9 7 41 41 H 1.08998 * 109.51292 * 53.53477 * 19 18 17 42 42 H 1.09005 * 109.54812 * 293.41346 * 19 18 17 43 43 H 1.08993 * 109.44287 * 298.84971 * 20 19 18 44 44 H 1.09002 * 109.41047 * 178.94293 * 20 19 18 45 45 H 0.97001 * 118.05416 * 37.97736 * 23 21 20 46 46 H 1.08997 * 109.37896 * 102.54698 * 26 24 23 47 47 H 1.09001 * 109.37300 * 222.31598 * 26 24 23 48 48 H 1.09008 * 109.68389 * 168.62387 * 27 26 24 49 49 H 1.09000 * 109.68684 * 289.14630 * 27 26 24 50 50 H 1.08995 * 109.07060 * 65.79928 * 30 18 17 51 51 H 1.08993 * 110.33133 * 305.64734 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8622 2.5349 -0.0005 5 6 1.7167 3.0243 1.4417 6 6 1.2811 4.4910 1.4412 7 6 1.1385 4.9732 2.8618 8 1 1.3381 4.3006 3.6829 9 6 0.7532 6.2729 3.1132 10 7 0.5106 7.0920 2.1134 11 14 0.5757 6.8704 4.8742 12 1 1.8710 7.4266 5.3412 13 1 -0.4673 7.9258 4.9361 14 1 0.1821 5.7339 5.7452 15 7 3.5162 0.6481 -0.0006 16 7 3.5211 -0.6372 0.0049 17 6 2.2888 -1.0878 -0.0005 18 7 1.8977 -2.4172 -0.0007 19 6 1.0146 -2.7064 1.1372 20 6 0.4780 -4.1337 1.0089 21 6 1.6436 -5.1198 0.9763 22 1 1.2349 -6.1118 0.7839 23 7 2.3342 -5.1421 2.2564 24 6 3.6574 -5.2600 2.3864 25 8 4.1223 -5.3162 3.5052 26 6 4.6007 -5.3260 1.2198 27 6 3.8324 -5.6775 -0.0564 28 6 2.6084 -4.7561 -0.1535 29 1 2.1166 -4.8974 -1.1159 30 6 3.0741 -3.3040 -0.0193 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5133 33 1 -0.3634 -0.8897 -0.5142 34 1 2.6123 3.1362 -0.5143 35 1 0.9058 2.6301 -0.5148 36 1 0.9665 2.4231 1.9555 37 1 2.6730 2.9290 1.9559 38 1 2.0311 5.0925 0.9274 39 1 0.3247 4.5859 0.9271 40 1 0.2399 8.0065 2.2903 41 1 0.1817 -2.0033 1.1396 42 1 1.5748 -2.6104 2.0673 43 1 -0.0987 -4.2231 0.0884 44 1 -0.1628 -4.3578 1.8617 45 1 1.8011 -5.0711 3.0637 46 1 5.0882 -4.3594 1.0938 47 1 5.3552 -6.0899 1.4077 48 1 4.4744 -5.5277 -0.9246 49 1 3.5077 -6.7172 -0.0150 50 1 3.6248 -3.1849 0.9137 51 1 3.7243 -3.0531 -0.8573 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121397921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:21 Heat of formation + Delta-G solvation = 35.928737 kcal Electronic energy + Delta-G solvation = -31292.945619 eV Core-core repulsion = 27227.949577 eV Total energy + Delta-G solvation = -4064.996042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.94817 -41.39821 -38.81741 -36.27232 -35.36385 -34.47611 -34.33496 -32.54540 -31.81485 -29.92440 -29.51240 -27.74088 -26.94439 -25.60703 -24.87759 -23.79136 -22.86937 -21.77588 -21.01147 -20.79813 -20.09713 -18.69682 -17.52763 -17.25402 -16.71813 -16.41071 -16.32930 -16.26187 -16.06167 -15.42802 -14.87639 -14.66341 -14.50904 -14.32410 -14.10970 -14.01905 -13.79364 -13.62049 -13.32659 -13.10582 -12.94138 -12.65702 -12.36043 -12.08805 -12.00970 -11.63642 -11.56766 -11.49788 -11.35179 -11.24139 -11.11317 -10.87957 -10.84551 -10.57944 -10.44104 -10.12498 -10.06487 -9.89227 -9.77955 -9.49482 -9.38680 -9.14239 -8.38276 -8.20352 -6.03519 -4.05828 1.80197 2.21706 2.31181 2.84915 2.95505 3.30458 3.36805 3.39453 3.39898 3.89791 3.92651 4.14077 4.21402 4.36209 4.43077 4.48010 4.53936 4.64219 4.70096 4.79274 4.81876 4.84784 4.92970 4.98870 5.05241 5.15567 5.18013 5.27040 5.32683 5.32991 5.34975 5.39564 5.44675 5.50351 5.57022 5.64004 5.82441 5.85171 5.98744 6.06009 6.36810 6.38150 6.56834 6.59577 6.72876 6.93403 6.99706 7.12744 7.61644 7.74759 7.85897 7.95611 8.38091 8.91262 9.00661 9.58553 11.07711 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.002210 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.167415 B =12664.209987 C =13197.273568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.483 5.483 3 C 0.203 3.797 4 C -0.035 4.035 5 C -0.102 4.102 6 C 0.023 3.977 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.275 1.275 15 N -0.288 5.288 16 N -0.322 5.322 17 C 0.339 3.661 18 N -0.448 5.448 19 C 0.047 3.953 20 C -0.125 4.125 21 C 0.142 3.858 22 H 0.079 0.921 23 N -0.716 5.716 24 C 0.521 3.479 25 O -0.555 6.555 26 C -0.143 4.143 27 C -0.117 4.117 28 C -0.097 4.097 29 H 0.104 0.896 30 C 0.076 3.924 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.398 0.602 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.056 0.944 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 -29.283 -9.098 30.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.178 5.178 3 C -0.064 4.064 4 C -0.075 4.075 5 C -0.141 4.141 6 C -0.014 4.014 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.719 3.281 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.200 1.200 15 N -0.126 5.126 16 N -0.166 5.166 17 C -0.017 4.017 18 N -0.171 5.171 19 C -0.080 4.080 20 C -0.163 4.163 21 C 0.037 3.963 22 H 0.097 0.903 23 N -0.369 5.369 24 C 0.308 3.692 25 O -0.433 6.433 26 C -0.182 4.182 27 C -0.155 4.155 28 C -0.116 4.116 29 H 0.122 0.878 30 C -0.051 4.051 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.234 0.766 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.103 0.897 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.009 -29.273 -9.186 30.697 hybrid contribution -1.596 0.618 1.832 2.507 sum -2.605 -28.655 -7.354 29.698 Atomic orbital electron populations 1.22131 0.75637 1.05198 1.03946 1.46056 1.08557 1.05792 1.57379 1.25278 0.86312 0.92052 1.02783 1.20357 1.02004 0.83660 1.01457 1.21645 1.00973 1.00057 0.91391 1.19099 0.96563 0.88480 0.97268 1.21212 1.45858 0.96401 0.92446 0.92780 1.25003 0.95433 0.96899 0.97025 1.69953 1.46895 1.05963 1.30605 0.86608 0.77889 0.78511 0.85087 1.20572 1.21205 1.19951 1.74012 1.17488 1.02109 1.19016 1.74539 1.15318 1.03988 1.22774 1.22463 0.87258 0.86906 1.05080 1.58676 1.19355 0.97270 1.41821 1.22368 0.96528 0.97978 0.91095 1.21900 0.97198 0.92895 1.04347 1.20832 0.92460 0.99519 0.83473 0.90340 1.45571 1.07319 1.74643 1.09384 1.20238 0.82821 0.75014 0.91088 1.90786 1.75599 1.50318 1.26618 1.21749 0.98129 1.05637 0.92714 1.21721 0.96361 0.99531 0.97886 1.21605 0.96372 0.94329 0.99327 0.87775 1.22246 0.89759 0.89416 1.03695 0.90181 0.88546 0.89123 0.88423 0.90421 0.93702 0.92477 0.96133 0.96504 0.92960 0.89580 0.93120 0.88758 0.89847 0.76578 0.87539 0.87945 0.89702 0.90496 0.92588 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 9.28 59.85 0.56 1.22 16 2 N -0.48 -6.51 3.21 -121.46 -0.39 -6.90 16 3 C 0.20 3.37 7.32 -154.01 -1.13 2.24 16 4 C -0.04 -0.58 5.59 -27.89 -0.16 -0.73 16 5 C -0.10 -2.04 5.14 -26.73 -0.14 -2.18 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 11 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 N -0.29 -5.45 12.18 32.99 0.40 -5.05 16 16 N -0.32 -5.55 11.24 30.31 0.34 -5.21 16 17 C 0.34 4.71 7.21 -318.89 -2.30 2.41 16 18 N -0.45 -4.36 4.68 -174.09 -0.82 -5.18 16 19 C 0.05 0.37 5.22 -3.81 -0.02 0.35 16 20 C -0.12 -0.53 5.70 -26.87 -0.15 -0.68 16 21 C 0.14 0.66 3.01 -68.65 -0.21 0.45 16 22 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 23 N -0.72 -5.08 4.72 -55.13 -0.26 -5.34 16 24 C 0.52 5.18 6.95 -11.82 -0.08 5.09 16 25 O -0.56 -8.18 17.79 5.55 0.10 -8.08 16 26 C -0.14 -1.01 5.38 -28.11 -0.15 -1.16 16 27 C -0.12 -0.51 5.64 -26.44 -0.15 -0.66 16 28 C -0.10 -0.49 2.74 -90.34 -0.25 -0.74 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 C 0.08 0.66 3.66 -3.54 -0.01 0.64 16 31 H 0.08 0.66 7.74 -51.93 -0.40 0.26 16 32 H 0.10 0.81 7.25 -51.93 -0.38 0.43 16 33 H 0.09 0.60 7.67 -51.93 -0.40 0.21 16 34 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.08 1.11 7.27 -51.93 -0.38 0.73 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.09 0.62 5.23 -51.93 -0.27 0.35 16 42 H 0.05 0.50 7.91 -51.93 -0.41 0.09 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.40 2.72 8.68 -40.82 -0.35 2.36 16 46 H 0.11 0.83 6.81 -51.93 -0.35 0.48 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 49 H 0.08 0.26 8.12 -51.93 -0.42 -0.16 16 50 H 0.06 0.60 5.58 -51.93 -0.29 0.31 16 51 H 0.10 0.94 7.96 -51.93 -0.41 0.53 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -36.75 396.17 -11.94 -48.68 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -8.26 Total: -3.08 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -4.74 Total: -6.65 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.01 Total: -53.40 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.10 Total: -8.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.75 -11.94 -48.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121397921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.611 kcal (2) G-P(sol) polarization free energy of solvation -36.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds