Wall clock time and date at job start Wed Apr 1 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36745 * 127.13550 * 2 1 4 4 C 1.50691 * 126.34949 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47215 * 90.00176 * 4 3 2 6 6 C 1.53007 * 109.47268 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47237 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99631 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99918 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00173 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99898 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47132 * 89.99754 * 11 9 7 13 13 H 1.48501 * 109.47360 * 209.99887 * 11 9 7 14 14 H 1.48500 * 109.47149 * 329.99681 * 11 9 7 15 15 N 1.30295 * 107.30171 * 180.02562 * 3 2 1 16 16 N 1.28525 * 110.05448 * 359.72533 * 15 3 2 17 17 C 1.31220 * 109.86231 * 0.45327 * 16 15 3 18 18 N 1.38570 * 126.47540 * 179.82387 * 17 16 15 19 19 C 1.46911 * 111.00403 * 123.64506 * 18 17 16 20 20 C 1.53020 * 109.24034 * 173.46419 * 19 18 17 21 21 C 1.52713 * 109.65891 * 58.90935 * 20 19 18 22 22 H 1.09000 * 107.77116 * 185.61729 * 21 20 19 23 23 N 1.45475 * 110.69705 * 66.95551 * 21 20 19 24 24 C 1.33479 * 123.89525 * 217.68232 * 23 21 20 25 25 O 1.21283 * 118.28661 * 182.64493 * 24 23 21 26 26 C 1.50168 * 123.42762 * 2.67938 * 24 23 21 27 27 C 1.53059 * 110.03393 * 342.37048 * 26 24 23 28 28 C 1.52955 * 110.10412 * 304.17342 * 21 20 19 29 29 H 1.08998 * 109.67475 * 293.84806 * 28 21 20 30 30 C 1.47337 * 110.61907 * 358.93908 * 18 17 16 31 31 H 1.09002 * 109.46922 * 269.97855 * 1 2 3 32 32 H 1.08999 * 109.47276 * 29.96886 * 1 2 3 33 33 H 1.08996 * 109.47531 * 149.97271 * 1 2 3 34 34 H 1.09005 * 109.47607 * 210.00366 * 4 3 2 35 35 H 1.09005 * 109.47157 * 329.99966 * 4 3 2 36 36 H 1.09001 * 109.46962 * 299.99806 * 5 4 3 37 37 H 1.08995 * 109.47170 * 59.99838 * 5 4 3 38 38 H 1.09001 * 109.46708 * 299.99640 * 6 5 4 39 39 H 1.08995 * 109.47420 * 59.99669 * 6 5 4 40 40 H 0.97001 * 119.99949 * 180.02562 * 10 9 7 41 41 H 1.08998 * 109.51292 * 53.53477 * 19 18 17 42 42 H 1.09005 * 109.54812 * 293.41346 * 19 18 17 43 43 H 1.08993 * 109.44287 * 298.84971 * 20 19 18 44 44 H 1.09002 * 109.41047 * 178.94293 * 20 19 18 45 45 H 0.97001 * 118.05416 * 37.97736 * 23 21 20 46 46 H 1.08997 * 109.37896 * 102.54698 * 26 24 23 47 47 H 1.09001 * 109.37300 * 222.31598 * 26 24 23 48 48 H 1.09008 * 109.68389 * 168.62387 * 27 26 24 49 49 H 1.09000 * 109.68684 * 289.14630 * 27 26 24 50 50 H 1.08995 * 109.07060 * 65.79928 * 30 18 17 51 51 H 1.08993 * 110.33133 * 305.64734 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8622 2.5349 -0.0005 5 6 1.7167 3.0243 1.4417 6 6 1.2811 4.4910 1.4412 7 6 1.1385 4.9732 2.8618 8 1 1.3381 4.3006 3.6829 9 6 0.7532 6.2729 3.1132 10 7 0.5106 7.0920 2.1134 11 14 0.5757 6.8704 4.8742 12 1 1.8710 7.4266 5.3412 13 1 -0.4673 7.9258 4.9361 14 1 0.1821 5.7339 5.7452 15 7 3.5162 0.6481 -0.0006 16 7 3.5211 -0.6372 0.0049 17 6 2.2888 -1.0878 -0.0005 18 7 1.8977 -2.4172 -0.0007 19 6 1.0146 -2.7064 1.1372 20 6 0.4780 -4.1337 1.0089 21 6 1.6436 -5.1198 0.9763 22 1 1.2349 -6.1118 0.7839 23 7 2.3342 -5.1421 2.2564 24 6 3.6574 -5.2600 2.3864 25 8 4.1223 -5.3162 3.5052 26 6 4.6007 -5.3260 1.2198 27 6 3.8324 -5.6775 -0.0564 28 6 2.6084 -4.7561 -0.1535 29 1 2.1166 -4.8974 -1.1159 30 6 3.0741 -3.3040 -0.0193 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5133 33 1 -0.3634 -0.8897 -0.5142 34 1 2.6123 3.1362 -0.5143 35 1 0.9058 2.6301 -0.5148 36 1 0.9665 2.4231 1.9555 37 1 2.6730 2.9290 1.9559 38 1 2.0311 5.0925 0.9274 39 1 0.3247 4.5859 0.9271 40 1 0.2399 8.0065 2.2903 41 1 0.1817 -2.0033 1.1396 42 1 1.5748 -2.6104 2.0673 43 1 -0.0987 -4.2231 0.0884 44 1 -0.1628 -4.3578 1.8617 45 1 1.8011 -5.0711 3.0637 46 1 5.0882 -4.3594 1.0938 47 1 5.3552 -6.0899 1.4077 48 1 4.4744 -5.5277 -0.9246 49 1 3.5077 -6.7172 -0.0150 50 1 3.6248 -3.1849 0.9137 51 1 3.7243 -3.0531 -0.8573 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121397921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:20 Heat of formation + Delta-G solvation = 12.316579 kcal Electronic energy + Delta-G solvation = -31293.969519 eV Core-core repulsion = 27227.949577 eV Total energy + Delta-G solvation = -4066.019942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.08541 -42.02462 -39.61277 -37.11076 -36.76912 -35.74779 -34.92439 -34.33979 -32.67394 -30.96352 -30.50514 -28.73526 -28.39301 -26.24255 -25.76340 -25.32880 -23.48621 -22.53777 -22.44968 -21.78895 -21.49741 -19.25570 -18.59474 -18.25141 -17.93222 -17.61157 -17.32260 -16.92972 -16.89469 -16.55596 -16.23638 -15.71207 -15.51127 -15.39745 -15.07695 -14.81074 -14.49633 -14.41822 -14.30876 -14.04461 -13.88290 -13.70559 -13.54623 -13.32281 -13.13992 -12.72756 -12.67390 -12.65887 -12.55127 -12.43078 -12.18940 -11.97607 -11.75937 -11.73426 -11.61048 -11.46748 -11.43619 -11.28155 -11.16613 -10.80600 -10.75174 -10.55463 -10.07294 -9.31884 -8.20842 -6.30844 0.70077 1.21562 1.38681 1.40118 1.50321 1.56361 1.73339 2.28726 2.39977 2.54559 3.12652 3.33995 3.43427 3.47518 3.62349 3.68996 3.75618 3.83336 3.96378 3.99818 4.13835 4.21004 4.23197 4.24440 4.33899 4.35778 4.37216 4.48050 4.51388 4.59982 4.67585 4.69200 4.79771 4.82753 4.88527 4.98317 5.04014 5.06627 5.08357 5.12735 5.13546 5.14867 5.19764 5.44975 5.50490 5.61590 5.73285 5.80006 5.84591 6.11249 6.24860 6.30510 6.84808 7.16362 7.37888 7.70450 8.90498 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.002210 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.167415 B =12664.209987 C =13197.273568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.478 5.478 3 C 0.193 3.807 4 C -0.022 4.022 5 C -0.083 4.083 6 C 0.028 3.972 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.005 3.995 10 N -0.928 5.928 11 Si 0.958 3.042 12 H -0.277 1.277 13 H -0.278 1.278 14 H -0.266 1.266 15 N -0.329 5.329 16 N -0.363 5.363 17 C 0.352 3.648 18 N -0.433 5.433 19 C 0.043 3.957 20 C -0.115 4.115 21 C 0.137 3.863 22 H 0.114 0.886 23 N -0.707 5.707 24 C 0.514 3.486 25 O -0.616 6.616 26 C -0.142 4.142 27 C -0.108 4.108 28 C -0.088 4.088 29 H 0.132 0.868 30 C 0.075 3.925 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.036 0.964 38 H -0.004 1.004 39 H 0.009 0.991 40 H 0.264 0.736 41 H 0.096 0.904 42 H 0.022 0.978 43 H 0.120 0.880 44 H 0.103 0.897 45 H 0.399 0.601 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.028 0.972 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 -31.778 -9.904 33.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.173 5.173 3 C -0.077 4.077 4 C -0.061 4.061 5 C -0.122 4.122 6 C -0.009 4.009 7 C -0.582 4.582 8 H 0.070 0.930 9 C -0.194 4.194 10 N -0.568 5.568 11 Si 0.783 3.217 12 H -0.202 1.202 13 H -0.203 1.203 14 H -0.190 1.190 15 N -0.168 5.168 16 N -0.207 5.207 17 C -0.006 4.006 18 N -0.157 5.157 19 C -0.084 4.084 20 C -0.153 4.153 21 C 0.033 3.967 22 H 0.132 0.868 23 N -0.358 5.358 24 C 0.303 3.697 25 O -0.500 6.500 26 C -0.182 4.182 27 C -0.146 4.146 28 C -0.108 4.108 29 H 0.149 0.851 30 C -0.052 4.052 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.014 0.986 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.041 0.959 43 H 0.138 0.862 44 H 0.121 0.879 45 H 0.235 0.765 46 H 0.109 0.891 47 H 0.125 0.875 48 H 0.116 0.884 49 H 0.118 0.882 50 H 0.047 0.953 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.765 -31.786 -10.026 33.542 hybrid contribution -0.797 1.361 2.053 2.589 sum -4.562 -30.425 -7.973 31.781 Atomic orbital electron populations 1.22540 0.72834 1.07213 1.05220 1.46213 1.10040 1.04631 1.56435 1.25045 0.86473 0.92531 1.03628 1.20118 1.03243 0.83804 0.98983 1.21330 0.99771 0.97235 0.93904 1.18976 0.95368 0.91029 0.95529 1.21638 1.45878 0.96904 0.93811 0.92967 1.25864 0.95019 0.97098 1.01378 1.70061 1.47580 1.06378 1.32789 0.85552 0.78013 0.78214 0.79909 1.20230 1.20322 1.19029 1.73898 1.19295 1.03279 1.20314 1.74436 1.17590 1.03496 1.25193 1.22949 0.86593 0.88581 1.02460 1.58933 1.19527 0.95034 1.42200 1.22549 0.95858 1.01020 0.88923 1.21958 0.97116 0.89675 1.06576 1.21161 0.92192 1.01573 0.81756 0.86792 1.45635 1.06565 1.72799 1.10761 1.20744 0.83933 0.74173 0.90900 1.90748 1.76847 1.53453 1.28907 1.21748 0.98080 1.05047 0.93283 1.21739 0.95928 1.00440 0.96479 1.21649 0.96948 0.91318 1.00836 0.85056 1.22296 0.89383 0.91722 1.01782 0.89214 0.87651 0.86127 0.89080 0.87779 0.92886 0.94547 0.98597 0.97304 0.92680 0.88626 0.95939 0.86155 0.87882 0.76526 0.89078 0.87490 0.88400 0.88236 0.95344 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 9.28 127.77 1.19 2.15 16 2 N -0.48 -12.41 3.21 -538.20 -1.73 -14.14 16 3 C 0.19 6.43 7.32 137.63 1.01 7.43 16 4 C -0.02 -0.72 5.59 29.84 0.17 -0.56 16 5 C -0.08 -3.41 5.14 30.60 0.16 -3.25 16 6 C 0.03 1.43 4.97 29.85 0.15 1.58 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.00 0.27 5.46 84.65 0.46 0.73 16 10 N -0.93 -55.42 13.29 21.44 0.28 -55.13 16 11 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 N -0.33 -12.94 12.18 -49.54 -0.60 -13.55 16 16 N -0.36 -12.95 11.24 -58.01 -0.65 -13.61 16 17 C 0.35 9.61 7.21 260.12 1.88 11.48 16 18 N -0.43 -7.68 4.68 -704.71 -3.30 -10.98 16 19 C 0.04 0.57 5.22 86.31 0.45 1.02 16 20 C -0.12 -0.47 5.70 30.51 0.17 -0.30 16 21 C 0.14 0.74 3.01 45.07 0.14 0.88 16 22 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 23 N -0.71 -8.99 4.72 -447.44 -2.11 -11.10 16 24 C 0.51 10.32 6.95 87.69 0.61 10.93 16 25 O -0.62 -19.22 17.79 -3.04 -0.05 -19.28 16 26 C -0.14 -1.98 5.38 29.70 0.16 -1.82 16 27 C -0.11 -0.65 5.64 30.78 0.17 -0.48 16 28 C -0.09 -0.61 2.74 -10.61 -0.03 -0.63 16 29 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 30 C 0.07 1.23 3.66 86.25 0.32 1.55 16 31 H 0.09 1.24 7.74 -2.39 -0.02 1.22 16 32 H 0.10 1.47 7.25 -2.39 -0.02 1.45 16 33 H 0.12 1.12 7.67 -2.39 -0.02 1.10 16 34 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 35 H 0.10 2.85 7.27 -2.38 -0.02 2.84 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.10 1.08 5.23 -2.39 -0.01 1.07 16 42 H 0.02 0.43 7.91 -2.38 -0.02 0.41 16 43 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.40 5.00 8.68 -92.71 -0.80 4.19 16 46 H 0.09 1.56 6.81 -2.39 -0.02 1.54 16 47 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 49 H 0.10 0.24 8.12 -2.39 -0.02 0.23 16 50 H 0.03 0.64 5.58 -2.39 -0.01 0.62 16 51 H 0.09 1.63 7.96 -2.39 -0.02 1.61 16 Total: -1.00 -85.03 396.17 1.23 -83.81 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.14 Total: 7.58 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 7.23 Total: 0.10 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -8.11 Total: -118.51 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.05 Total: -19.28 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -85.03 1.23 -83.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121397921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.123 kcal (2) G-P(sol) polarization free energy of solvation -85.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds