Wall clock time and date at job start Wed Apr 1 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36742 * 127.13309 * 2 1 4 4 C 1.50693 * 126.35130 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47312 * 90.00288 * 4 3 2 6 6 C 1.50701 * 109.47699 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99225 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00342 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99901 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00226 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47373 * 89.99482 * 10 8 6 12 12 H 1.48501 * 109.47255 * 209.99717 * 10 8 6 13 13 H 1.48502 * 109.46717 * 329.99825 * 10 8 6 14 14 N 1.30294 * 107.30353 * 180.02562 * 3 2 1 15 15 N 1.28529 * 110.05379 * 359.72204 * 14 3 2 16 16 C 1.31221 * 109.85896 * 0.45947 * 15 14 3 17 17 N 1.38582 * 126.47111 * 179.82185 * 16 15 14 18 18 C 1.46848 * 110.99767 * 123.63882 * 17 16 15 19 19 C 1.53034 * 109.52065 * 174.15771 * 18 17 16 20 20 C 1.53121 * 109.27947 * 59.18320 * 19 18 17 21 21 C 1.53125 * 109.15749 * 302.34053 * 20 19 18 22 22 H 1.09000 * 109.50708 * 297.67826 * 21 20 19 23 23 C 1.50697 * 109.50329 * 177.59543 * 21 20 19 24 24 O 1.21288 * 119.99852 * 240.00740 * 23 21 20 25 25 N 1.34771 * 120.00045 * 59.99909 * 23 21 20 26 26 C 1.46502 * 120.00043 * 179.97438 * 25 23 21 27 27 C 1.53002 * 117.49878 * 136.25872 * 26 25 23 28 28 C 1.53000 * 117.50101 * 204.91628 * 26 25 23 29 29 C 1.46843 * 111.00175 * 359.42873 * 17 16 15 30 30 H 1.08992 * 109.47289 * 269.97918 * 1 2 3 31 31 H 1.09000 * 109.46886 * 29.98098 * 1 2 3 32 32 H 1.09001 * 109.47062 * 149.97888 * 1 2 3 33 33 H 1.09003 * 109.47342 * 210.00393 * 4 3 2 34 34 H 1.09001 * 109.47016 * 330.00555 * 4 3 2 35 35 H 1.09003 * 109.47003 * 300.00313 * 5 4 3 36 36 H 1.08999 * 109.47430 * 59.99681 * 5 4 3 37 37 H 0.96999 * 120.00061 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.46399 * 54.14468 * 18 17 16 39 39 H 1.08999 * 109.45651 * 294.17176 * 18 17 16 40 40 H 1.09005 * 109.50465 * 299.23761 * 19 18 17 41 41 H 1.09002 * 109.50773 * 179.12094 * 19 18 17 42 42 H 1.09003 * 109.52522 * 182.44367 * 20 19 18 43 43 H 1.08999 * 109.52712 * 62.24412 * 20 19 18 44 44 H 0.97002 * 120.00224 * 0.02562 * 25 23 21 45 45 H 1.09002 * 115.54961 * 350.58847 * 26 25 23 46 46 H 1.09000 * 117.49996 * 215.00801 * 27 26 25 47 47 H 1.08999 * 117.49664 * 0.02562 * 27 26 25 48 48 H 1.09008 * 117.49673 * 359.97438 * 28 26 25 49 49 H 1.08999 * 117.49942 * 144.97376 * 28 26 25 50 50 H 1.09003 * 109.46211 * 65.82338 * 29 17 16 51 51 H 1.09007 * 109.46411 * 305.85812 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0902 0.0000 4 6 1.8621 2.5349 -0.0005 5 6 1.7167 3.0243 1.4417 6 6 1.2876 4.4690 1.4413 7 1 1.1345 4.9864 0.5057 8 6 1.0917 5.1303 2.6350 9 7 1.2787 4.5003 3.7742 10 14 0.5606 6.9213 2.6344 11 1 -0.9224 6.9978 2.6344 12 1 1.0910 7.5953 3.8467 13 1 1.0911 7.5944 1.4217 14 7 3.5162 0.6482 -0.0006 15 7 3.5212 -0.6371 0.0050 16 6 2.2888 -1.0877 -0.0005 17 7 1.8978 -2.4173 -0.0007 18 6 1.0152 -2.7063 1.1367 19 6 0.4884 -4.1387 1.0241 20 6 1.6700 -5.1124 1.0108 21 6 2.5990 -4.7593 -0.1542 22 1 2.0625 -4.8764 -1.0958 23 6 3.7952 -5.6757 -0.1393 24 8 4.9112 -5.2143 -0.0263 25 7 3.6250 -7.0079 -0.2514 26 6 4.7880 -7.8987 -0.2375 27 6 4.6914 -9.1735 0.6031 28 6 4.6448 -9.2583 -0.9245 29 6 3.0646 -3.3089 -0.0074 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 2.6122 3.1362 -0.5143 34 1 0.9057 2.6301 -0.5147 35 1 0.9665 2.4231 1.9555 36 1 2.6730 2.9291 1.9560 37 1 1.1405 4.9655 4.6141 38 1 0.1768 -2.0096 1.1321 39 1 1.5733 -2.5966 2.0665 40 1 -0.0815 -4.2454 0.1010 41 1 -0.1544 -4.3582 1.8767 42 1 1.3016 -6.1308 0.8871 43 1 2.2176 -5.0336 1.9500 44 1 2.7325 -7.3769 -0.3420 45 1 5.7585 -7.4058 -0.2945 46 1 5.5984 -9.5192 1.0992 47 1 3.7625 -9.3495 1.1454 48 1 3.6850 -9.4901 -1.3865 49 1 5.5209 -9.6596 -1.4339 50 1 3.6130 -3.1964 0.9279 51 1 3.7149 -3.0499 -0.8430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121494623.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:04 Heat of formation + Delta-G solvation = 65.836976 kcal Electronic energy + Delta-G solvation = -30476.188153 eV Core-core repulsion = 26412.489030 eV Total energy + Delta-G solvation = -4063.699123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.59574 -40.62276 -38.81821 -37.36008 -34.88129 -34.57161 -33.63183 -32.90396 -31.53521 -31.32314 -28.44375 -27.41737 -25.45459 -24.86641 -24.63911 -22.89034 -22.37462 -21.71389 -21.47181 -20.78511 -20.11520 -19.66911 -17.92329 -17.10213 -16.69499 -16.43878 -15.98802 -15.87704 -15.46237 -15.13044 -15.10088 -14.64106 -14.46528 -14.29969 -14.22975 -13.61267 -13.40323 -13.17031 -13.13214 -12.99610 -12.94301 -12.58165 -12.26720 -12.10126 -11.89494 -11.77685 -11.41973 -11.33600 -11.12301 -11.06026 -11.02541 -10.98602 -10.90715 -10.67803 -10.26483 -10.04758 -10.03629 -9.87622 -9.74144 -9.34508 -9.20460 -9.18141 -8.41289 -7.89278 -6.05531 -4.09659 2.12339 2.23910 2.42363 2.73971 3.28907 3.29681 3.36338 3.39970 3.43439 3.71109 4.12706 4.28479 4.31541 4.41092 4.41639 4.48186 4.49982 4.62766 4.68468 4.81781 4.98360 5.07982 5.10586 5.12216 5.15691 5.21709 5.30274 5.30912 5.31767 5.36557 5.44046 5.48603 5.54113 5.55322 5.56717 5.66830 5.70603 5.84475 5.93731 6.07694 6.23542 6.37184 6.47974 6.66052 6.70746 6.94707 7.05483 7.43596 7.55555 7.70114 7.86301 7.92122 8.29723 8.96563 9.25960 9.54970 11.05557 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.001874 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.095176 B =14935.627224 C =15195.243539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.483 5.483 3 C 0.212 3.788 4 C -0.030 4.030 5 C 0.032 3.968 6 C -0.524 4.524 7 H 0.059 0.941 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.272 1.272 14 N -0.294 5.294 15 N -0.318 5.318 16 C 0.334 3.666 17 N -0.448 5.448 18 C 0.042 3.958 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.104 4.104 22 H 0.110 0.890 23 C 0.525 3.475 24 O -0.525 6.525 25 N -0.704 5.704 26 C 0.080 3.920 27 C -0.194 4.194 28 C -0.190 4.190 29 C 0.094 3.906 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.013 0.987 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.401 0.599 45 H 0.139 0.861 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.062 0.938 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 -29.227 -8.255 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.178 5.178 3 C -0.056 4.056 4 C -0.070 4.070 5 C -0.006 4.006 6 C -0.562 4.562 7 H 0.077 0.923 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 N -0.132 5.132 15 N -0.163 5.163 16 C -0.023 4.023 17 N -0.172 5.172 18 C -0.085 4.085 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.126 4.126 22 H 0.128 0.872 23 C 0.311 3.689 24 O -0.400 6.400 25 N -0.355 5.355 26 C -0.026 4.026 27 C -0.233 4.233 28 C -0.228 4.228 29 C -0.033 4.033 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.236 0.764 45 H 0.156 0.844 46 H 0.121 0.879 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.122 0.878 50 H 0.080 0.920 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.402 -28.938 -8.405 30.229 hybrid contribution -1.911 0.707 0.752 2.172 sum -4.312 -28.230 -7.653 29.566 Atomic orbital electron populations 1.22074 0.75898 1.04763 1.03868 1.46042 1.08441 1.05776 1.57564 1.25556 0.86159 0.92319 1.01544 1.20430 1.00776 0.82616 1.03164 1.19067 0.97836 0.95858 0.87880 1.21148 1.46425 0.96054 0.92568 0.92273 1.25015 0.95402 0.98305 0.95575 1.69974 1.48989 1.36824 0.97335 0.86549 0.78645 0.84862 0.77688 1.20696 1.21190 1.19708 1.74015 1.17627 1.01962 1.19617 1.74566 1.15275 1.04087 1.22341 1.22344 0.87347 0.86675 1.05893 1.58537 1.19168 0.97500 1.41982 1.22445 0.96671 0.98193 0.91165 1.21574 0.97298 0.92660 1.03378 1.21632 0.96209 0.99602 0.97764 1.21359 0.94738 0.94495 1.01990 0.87248 1.20511 0.90810 0.82213 0.75360 1.90769 1.25930 1.75572 1.47688 1.45372 1.09023 1.06038 1.75031 1.21622 0.91885 0.85051 1.04065 1.23438 1.04035 1.01983 0.93796 1.23388 1.03945 1.00067 0.95411 1.21693 0.89272 0.87724 1.04647 0.90244 0.88718 0.89455 0.89275 0.91266 0.96840 0.95623 0.92888 0.89673 0.93137 0.90365 0.90129 0.90911 0.91042 0.76421 0.84381 0.87948 0.88494 0.88468 0.87831 0.91977 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 9.29 59.85 0.56 1.49 16 2 N -0.48 -8.18 3.21 -121.46 -0.39 -8.57 16 3 C 0.21 4.32 7.32 -154.02 -1.13 3.19 16 4 C -0.03 -0.62 5.53 -27.89 -0.15 -0.77 16 5 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 6 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 7 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 10 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 N -0.29 -6.67 12.18 32.99 0.40 -6.27 16 15 N -0.32 -6.70 11.25 30.31 0.34 -6.36 16 16 C 0.33 5.79 7.21 -318.88 -2.30 3.49 16 17 N -0.45 -5.83 4.70 -174.55 -0.82 -6.65 16 18 C 0.04 0.44 5.28 -3.83 -0.02 0.42 16 19 C -0.11 -0.72 6.09 -26.65 -0.16 -0.88 16 20 C -0.11 -0.72 5.16 -26.60 -0.14 -0.86 16 21 C -0.10 -0.89 2.69 -91.69 -0.25 -1.13 16 22 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 23 C 0.53 5.26 7.16 -10.99 -0.08 5.18 16 24 O -0.53 -7.73 15.55 5.55 0.09 -7.65 16 25 N -0.70 -4.73 5.47 -53.80 -0.29 -5.03 16 26 C 0.08 0.55 6.43 -67.93 -0.44 0.11 16 27 C -0.19 -0.97 10.46 -26.69 -0.28 -1.25 16 28 C -0.19 -0.87 10.46 -26.70 -0.28 -1.15 16 29 C 0.09 1.22 3.45 -3.83 -0.01 1.20 16 30 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 31 H 0.09 1.07 7.25 -51.93 -0.38 0.70 16 32 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 33 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.07 1.25 7.27 -51.93 -0.38 0.88 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 0.83 5.23 -51.93 -0.27 0.56 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.27 7.65 -51.93 -0.40 -0.13 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.40 1.51 8.30 -40.82 -0.34 1.17 16 45 H 0.14 1.22 7.40 -51.93 -0.38 0.83 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 49 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 51 H 0.10 1.49 7.90 -51.93 -0.41 1.08 16 LS Contribution 410.78 15.07 6.19 6.19 Total: -1.00 -36.39 410.78 -12.39 -48.77 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.39 Total: -1.44 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -5.23 Total: -3.39 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.02 Total: -58.68 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.39 -12.39 -48.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494623.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.611 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds