Wall clock time and date at job start Wed Apr 1 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36742 * 127.13309 * 2 1 4 4 C 1.50693 * 126.35130 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47312 * 90.00288 * 4 3 2 6 6 C 1.50701 * 109.47699 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99225 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00342 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99901 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00226 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47373 * 89.99482 * 10 8 6 12 12 H 1.48501 * 109.47255 * 209.99717 * 10 8 6 13 13 H 1.48502 * 109.46717 * 329.99825 * 10 8 6 14 14 N 1.30294 * 107.30353 * 180.02562 * 3 2 1 15 15 N 1.28529 * 110.05379 * 359.72204 * 14 3 2 16 16 C 1.31221 * 109.85896 * 0.45947 * 15 14 3 17 17 N 1.38582 * 126.47111 * 179.82185 * 16 15 14 18 18 C 1.46848 * 110.99767 * 123.63882 * 17 16 15 19 19 C 1.53034 * 109.52065 * 174.15771 * 18 17 16 20 20 C 1.53121 * 109.27947 * 59.18320 * 19 18 17 21 21 C 1.53125 * 109.15749 * 302.34053 * 20 19 18 22 22 H 1.09000 * 109.50708 * 297.67826 * 21 20 19 23 23 C 1.50697 * 109.50329 * 177.59543 * 21 20 19 24 24 O 1.21288 * 119.99852 * 240.00740 * 23 21 20 25 25 N 1.34771 * 120.00045 * 59.99909 * 23 21 20 26 26 C 1.46502 * 120.00043 * 179.97438 * 25 23 21 27 27 C 1.53002 * 117.49878 * 136.25872 * 26 25 23 28 28 C 1.53000 * 117.50101 * 204.91628 * 26 25 23 29 29 C 1.46843 * 111.00175 * 359.42873 * 17 16 15 30 30 H 1.08992 * 109.47289 * 269.97918 * 1 2 3 31 31 H 1.09000 * 109.46886 * 29.98098 * 1 2 3 32 32 H 1.09001 * 109.47062 * 149.97888 * 1 2 3 33 33 H 1.09003 * 109.47342 * 210.00393 * 4 3 2 34 34 H 1.09001 * 109.47016 * 330.00555 * 4 3 2 35 35 H 1.09003 * 109.47003 * 300.00313 * 5 4 3 36 36 H 1.08999 * 109.47430 * 59.99681 * 5 4 3 37 37 H 0.96999 * 120.00061 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.46399 * 54.14468 * 18 17 16 39 39 H 1.08999 * 109.45651 * 294.17176 * 18 17 16 40 40 H 1.09005 * 109.50465 * 299.23761 * 19 18 17 41 41 H 1.09002 * 109.50773 * 179.12094 * 19 18 17 42 42 H 1.09003 * 109.52522 * 182.44367 * 20 19 18 43 43 H 1.08999 * 109.52712 * 62.24412 * 20 19 18 44 44 H 0.97002 * 120.00224 * 0.02562 * 25 23 21 45 45 H 1.09002 * 115.54961 * 350.58847 * 26 25 23 46 46 H 1.09000 * 117.49996 * 215.00801 * 27 26 25 47 47 H 1.08999 * 117.49664 * 0.02562 * 27 26 25 48 48 H 1.09008 * 117.49673 * 359.97438 * 28 26 25 49 49 H 1.08999 * 117.49942 * 144.97376 * 28 26 25 50 50 H 1.09003 * 109.46211 * 65.82338 * 29 17 16 51 51 H 1.09007 * 109.46411 * 305.85812 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0902 0.0000 4 6 1.8621 2.5349 -0.0005 5 6 1.7167 3.0243 1.4417 6 6 1.2876 4.4690 1.4413 7 1 1.1345 4.9864 0.5057 8 6 1.0917 5.1303 2.6350 9 7 1.2787 4.5003 3.7742 10 14 0.5606 6.9213 2.6344 11 1 -0.9224 6.9978 2.6344 12 1 1.0910 7.5953 3.8467 13 1 1.0911 7.5944 1.4217 14 7 3.5162 0.6482 -0.0006 15 7 3.5212 -0.6371 0.0050 16 6 2.2888 -1.0877 -0.0005 17 7 1.8978 -2.4173 -0.0007 18 6 1.0152 -2.7063 1.1367 19 6 0.4884 -4.1387 1.0241 20 6 1.6700 -5.1124 1.0108 21 6 2.5990 -4.7593 -0.1542 22 1 2.0625 -4.8764 -1.0958 23 6 3.7952 -5.6757 -0.1393 24 8 4.9112 -5.2143 -0.0263 25 7 3.6250 -7.0079 -0.2514 26 6 4.7880 -7.8987 -0.2375 27 6 4.6914 -9.1735 0.6031 28 6 4.6448 -9.2583 -0.9245 29 6 3.0646 -3.3089 -0.0074 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 2.6122 3.1362 -0.5143 34 1 0.9057 2.6301 -0.5147 35 1 0.9665 2.4231 1.9555 36 1 2.6730 2.9291 1.9560 37 1 1.1405 4.9655 4.6141 38 1 0.1768 -2.0096 1.1321 39 1 1.5733 -2.5966 2.0665 40 1 -0.0815 -4.2454 0.1010 41 1 -0.1544 -4.3582 1.8767 42 1 1.3016 -6.1308 0.8871 43 1 2.2176 -5.0336 1.9500 44 1 2.7325 -7.3769 -0.3420 45 1 5.7585 -7.4058 -0.2945 46 1 5.5984 -9.5192 1.0992 47 1 3.7625 -9.3495 1.1454 48 1 3.6850 -9.4901 -1.3865 49 1 5.5209 -9.6596 -1.4339 50 1 3.6130 -3.1964 0.9279 51 1 3.7149 -3.0499 -0.8430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121494623.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:03 Heat of formation + Delta-G solvation = 42.613890 kcal Electronic energy + Delta-G solvation = -30477.195182 eV Core-core repulsion = 26412.489030 eV Total energy + Delta-G solvation = -4064.706152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.05284 -41.43489 -39.68458 -37.99919 -36.42782 -35.87886 -35.02754 -33.79947 -33.20656 -32.13510 -30.08051 -28.58757 -27.21030 -25.80543 -25.63059 -23.77652 -23.25982 -22.83425 -22.43658 -21.73662 -21.46799 -20.69821 -18.90758 -18.55918 -17.91504 -17.44475 -17.41079 -17.03345 -16.49320 -16.30304 -16.05600 -15.76031 -15.46833 -15.27472 -15.11246 -14.87901 -14.67648 -14.37580 -14.29405 -14.15082 -13.82077 -13.61902 -13.59116 -13.17734 -12.85237 -12.77687 -12.59394 -12.51005 -12.44972 -12.34307 -12.08537 -12.07730 -11.88538 -11.79283 -11.69321 -11.46205 -11.44557 -11.32232 -11.13961 -10.84868 -10.76095 -10.57035 -9.76612 -9.34246 -8.20431 -6.32922 0.72549 1.20018 1.43068 1.45440 1.48655 1.56354 1.76507 1.98829 2.42269 2.60993 2.98996 3.13885 3.38015 3.45171 3.60768 3.75203 3.77425 3.81457 3.87074 3.95869 4.04257 4.07279 4.08474 4.16755 4.26643 4.27121 4.39574 4.50865 4.56485 4.60000 4.67512 4.73611 4.78119 4.82293 4.82820 4.86890 4.90930 4.97099 5.02768 5.04647 5.10446 5.22119 5.31094 5.43397 5.47702 5.50126 5.57052 5.61442 5.78151 6.11143 6.17186 6.47754 6.83066 7.19676 7.37258 7.73429 8.91647 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.001874 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.095176 B =14935.627224 C =15195.243539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.478 5.478 3 C 0.197 3.803 4 C -0.013 4.013 5 C 0.043 3.957 6 C -0.538 4.538 7 H 0.073 0.927 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.261 1.261 14 N -0.336 5.336 15 N -0.366 5.366 16 C 0.348 3.652 17 N -0.431 5.431 18 C 0.034 3.966 19 C -0.100 4.100 20 C -0.110 4.110 21 C -0.090 4.090 22 H 0.138 0.862 23 C 0.522 3.478 24 O -0.586 6.586 25 N -0.682 5.682 26 C 0.046 3.954 27 C -0.184 4.184 28 C -0.169 4.169 29 C 0.098 3.902 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.101 0.899 35 H -0.003 1.003 36 H -0.021 1.021 37 H 0.263 0.737 38 H 0.096 0.904 39 H 0.026 0.974 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.054 0.946 44 H 0.420 0.580 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.108 0.892 50 H 0.028 0.972 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 -31.346 -9.500 33.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.172 5.172 3 C -0.072 4.072 4 C -0.053 4.053 5 C 0.005 3.995 6 C -0.576 4.576 7 H 0.092 0.908 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.794 3.206 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.185 1.185 14 N -0.174 5.174 15 N -0.211 5.211 16 C -0.009 4.009 17 N -0.155 5.155 18 C -0.092 4.092 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.112 4.112 22 H 0.156 0.844 23 C 0.309 3.691 24 O -0.465 6.465 25 N -0.333 5.333 26 C -0.060 4.060 27 C -0.222 4.222 28 C -0.207 4.207 29 C -0.029 4.029 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.015 0.985 36 H -0.003 1.003 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.045 0.955 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.073 0.927 44 H 0.258 0.742 45 H 0.126 0.874 46 H 0.121 0.879 47 H 0.129 0.871 48 H 0.134 0.866 49 H 0.126 0.874 50 H 0.046 0.954 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.375 -31.117 -9.670 33.203 hybrid contribution -0.672 1.224 1.156 1.812 sum -7.046 -29.894 -8.513 31.871 Atomic orbital electron populations 1.22511 0.72775 1.07153 1.05028 1.46198 1.10082 1.04433 1.56522 1.25370 0.86395 0.92963 1.02494 1.20150 1.02353 0.82764 1.00001 1.18835 0.94654 0.95607 0.90425 1.21597 1.45896 0.96894 0.93247 0.90838 1.26010 0.95357 1.03317 0.95114 1.70129 1.50307 1.38964 0.98115 0.85375 0.78765 0.78695 0.77773 1.19213 1.21448 1.18518 1.73886 1.19540 1.03102 1.20906 1.74460 1.17849 1.03669 1.25080 1.22833 0.86627 0.88472 1.02994 1.58788 1.18833 0.95004 1.42838 1.22723 0.95848 1.01763 0.88851 1.21621 0.97353 0.89069 1.05738 1.21695 0.95436 1.02004 0.95669 1.21302 0.94597 0.90682 1.04581 0.84415 1.20797 0.90297 0.83361 0.74655 1.90755 1.28204 1.76739 1.50809 1.45149 1.10059 1.04822 1.73251 1.21612 0.90927 0.85862 1.07559 1.23505 1.04786 0.99521 0.94393 1.23472 1.05119 0.96918 0.95230 1.21568 0.88987 0.90801 1.01577 0.89628 0.87578 0.85929 0.89565 0.88051 0.98457 1.00286 0.92833 0.88589 0.95523 0.87972 0.87591 0.86650 0.92711 0.74168 0.87375 0.87909 0.87082 0.86591 0.87387 0.95397 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.45 9.29 127.77 1.19 2.64 16 2 N -0.48 -16.20 3.21 -538.20 -1.73 -17.92 16 3 C 0.20 8.32 7.32 137.64 1.01 9.33 16 4 C -0.01 -0.55 5.53 29.84 0.16 -0.38 16 5 C 0.04 2.28 4.95 29.85 0.15 2.43 16 6 C -0.54 -29.66 9.11 25.60 0.23 -29.43 16 7 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 8 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 9 N -0.94 -56.94 13.29 21.44 0.28 -56.65 16 10 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 14 N -0.34 -16.22 12.18 -49.54 -0.60 -16.83 16 15 N -0.37 -16.51 11.25 -58.00 -0.65 -17.16 16 16 C 0.35 12.44 7.21 260.11 1.88 14.31 16 17 N -0.43 -11.06 4.70 -706.14 -3.32 -14.38 16 18 C 0.03 0.66 5.28 86.32 0.46 1.11 16 19 C -0.10 -0.88 6.09 30.65 0.19 -0.70 16 20 C -0.11 -1.05 5.16 30.68 0.16 -0.89 16 21 C -0.09 -1.42 2.69 -11.49 -0.03 -1.45 16 22 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 23 C 0.52 10.50 7.16 87.66 0.63 11.13 16 24 O -0.59 -18.78 15.55 -3.05 -0.05 -18.83 16 25 N -0.68 -8.09 5.47 -442.53 -2.42 -10.51 16 26 C 0.05 0.62 6.43 44.99 0.29 0.90 16 27 C -0.18 -1.49 10.46 30.62 0.32 -1.17 16 28 C -0.17 -1.17 10.46 30.62 0.32 -0.85 16 29 C 0.10 2.68 3.45 86.33 0.30 2.98 16 30 H 0.09 1.81 7.75 -2.39 -0.02 1.79 16 31 H 0.11 2.13 7.25 -2.39 -0.02 2.11 16 32 H 0.12 1.82 7.66 -2.39 -0.02 1.80 16 33 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.10 3.54 7.27 -2.39 -0.02 3.52 16 35 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.10 1.64 5.23 -2.38 -0.01 1.62 16 39 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.12 0.21 7.65 -2.39 -0.02 0.19 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.42 1.62 8.30 -92.71 -0.77 0.85 16 45 H 0.11 2.11 7.40 -2.39 -0.02 2.09 16 46 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.12 0.40 8.14 -2.38 -0.02 0.38 16 49 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.03 0.94 8.08 -2.39 -0.02 0.92 16 51 H 0.07 2.23 7.90 -2.38 -0.02 2.21 16 Total: -1.00 -87.60 410.78 1.41 -86.19 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.17 Total: 10.29 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 7.70 Total: 10.43 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -8.44 Total: -133.45 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.05 Total: -18.83 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -87.60 1.41 -86.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494623.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.803 kcal (2) G-P(sol) polarization free energy of solvation -87.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds