Wall clock time and date at job start Wed Apr 1 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00312 * 2 1 4 4 N 1.46500 * 109.47152 * 124.99985 * 3 2 1 5 5 C 1.36733 * 127.13665 * 95.19831 * 4 3 2 6 6 C 1.50698 * 126.34760 * 0.02562 * 5 4 3 7 7 C 1.53002 * 109.47034 * 269.71029 * 6 5 4 8 8 C 1.50708 * 109.47030 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99801 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99662 * 179.72587 * 8 7 6 11 11 N 1.31517 * 119.99761 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00124 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47251 * 90.00254 * 12 10 8 14 14 H 1.48506 * 109.47013 * 209.99722 * 12 10 8 15 15 H 1.48499 * 109.47454 * 329.99984 * 12 10 8 16 16 N 1.30298 * 107.30546 * 179.73520 * 5 4 3 17 17 N 1.28525 * 110.05274 * 0.26356 * 16 5 4 18 18 C 1.31213 * 109.85971 * 0.02562 * 17 16 5 19 19 N 1.38590 * 126.47027 * 180.02562 * 18 17 16 20 20 C 1.46843 * 111.00329 * 59.27383 * 19 18 17 21 21 C 1.53039 * 109.52214 * 174.16231 * 20 19 18 22 22 C 1.53112 * 109.28044 * 59.17845 * 21 20 19 23 23 N 1.46499 * 109.52546 * 182.43768 * 22 21 20 24 24 C 1.34770 * 120.00150 * 274.68700 * 23 22 21 25 25 C 1.50699 * 120.00026 * 179.97438 * 24 23 22 26 26 O 1.21280 * 120.00342 * 359.97438 * 24 23 22 27 27 C 1.53129 * 109.16031 * 302.34455 * 22 21 20 28 28 C 1.46852 * 110.99668 * 295.06001 * 19 18 17 29 29 H 1.07998 * 120.00156 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99606 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99606 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46866 * 5.00523 * 3 2 1 33 33 H 1.08997 * 109.47163 * 244.99936 * 3 2 1 34 34 H 1.09008 * 109.47558 * 149.70833 * 6 5 4 35 35 H 1.09000 * 109.47476 * 29.70879 * 6 5 4 36 36 H 1.09000 * 109.46910 * 60.00144 * 7 6 5 37 37 H 1.08996 * 109.47110 * 299.99766 * 7 6 5 38 38 H 0.96993 * 119.99958 * 179.97438 * 11 10 8 39 39 H 1.09001 * 109.45876 * 294.17948 * 20 19 18 40 40 H 1.08996 * 109.46129 * 54.13947 * 20 19 18 41 41 H 1.08997 * 109.49792 * 299.23644 * 21 20 19 42 42 H 1.09005 * 109.49773 * 179.11799 * 21 20 19 43 43 H 1.09001 * 109.52368 * 62.24685 * 22 21 20 44 44 H 0.97005 * 119.99394 * 94.68169 * 23 22 21 45 45 H 1.08999 * 109.46866 * 59.99972 * 25 24 23 46 46 H 1.08996 * 109.47413 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47499 * 299.99924 * 25 24 23 48 48 H 1.08993 * 109.50155 * 297.71096 * 27 22 21 49 49 H 1.09001 * 109.49874 * 177.59346 * 27 22 21 50 50 H 1.09003 * 109.46321 * 305.85888 * 28 19 18 51 51 H 1.08994 * 109.45849 * 65.82652 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3183 0.9923 1.1193 6 6 5.1072 0.5150 -0.0727 7 6 5.0333 -1.0110 -0.1552 8 6 5.8228 -1.4884 -1.3470 9 1 6.3270 -0.7747 -1.9816 10 6 5.9063 -2.8365 -1.6233 11 7 6.5956 -3.2532 -2.6630 12 14 5.0416 -4.0714 -0.5202 13 1 3.6647 -4.3065 -1.0245 14 1 5.7952 -5.3510 -0.5238 15 1 4.9774 -3.5385 0.8644 16 7 4.7735 1.1639 2.3281 17 7 3.8326 1.5803 3.0983 18 6 2.7174 1.6970 2.4168 19 7 1.4921 2.1188 2.9080 20 6 1.5871 3.4735 3.4667 21 6 0.1923 3.9613 3.8652 22 6 -0.4019 3.0026 4.9006 23 7 -1.7602 3.4319 5.2427 24 6 -1.9519 4.3646 6.1965 25 6 -3.3491 4.8067 6.5480 26 8 -1.0001 4.8482 6.7719 27 6 -0.4450 1.5900 4.3110 28 6 0.9682 1.1709 3.8997 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0897 33 1 2.6214 1.4025 -0.9313 34 1 6.1474 0.8233 0.0328 35 1 4.6902 0.9486 -0.9816 36 1 3.9932 -1.3192 -0.2608 37 1 5.4504 -1.4446 0.7537 38 1 6.6546 -4.2016 -2.8572 39 1 2.2318 3.4594 4.3455 40 1 2.0073 4.1460 2.7190 41 1 -0.4490 3.9887 2.9843 42 1 0.2653 4.9607 4.2943 43 1 0.2183 3.0043 5.7969 44 1 -2.5214 3.0449 4.7826 45 1 -3.9240 3.9495 6.8985 46 1 -3.3048 5.5601 7.3344 47 1 -3.8291 5.2299 5.6656 48 1 -1.0964 1.5801 3.4372 49 1 -0.8275 0.8952 5.0587 50 1 0.9388 0.1711 3.4664 51 1 1.6157 1.1677 4.7764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121519565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:19 Heat of formation + Delta-G solvation = 59.522477 kcal Electronic energy + Delta-G solvation = -31086.001181 eV Core-core repulsion = 27022.028241 eV Total energy + Delta-G solvation = -4063.972941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.75583 -40.37824 -38.82667 -36.13318 -35.54492 -34.16418 -32.71474 -32.49455 -31.59092 -31.32173 -29.88062 -28.46146 -26.77518 -25.53697 -24.35188 -23.64741 -21.75293 -21.30721 -20.91789 -20.72985 -20.00375 -19.48994 -17.66677 -17.21314 -16.92977 -16.71714 -16.16454 -16.10333 -15.59879 -15.17513 -14.81866 -14.44796 -14.28872 -14.19591 -13.96626 -13.80307 -13.61471 -13.36617 -13.27435 -13.04973 -12.74952 -12.69607 -12.55606 -12.42089 -11.95062 -11.66224 -11.62666 -11.57439 -11.35491 -11.30882 -11.11216 -11.00376 -10.53051 -10.31265 -10.24101 -10.13798 -9.93301 -9.84594 -9.62548 -9.46738 -9.32111 -8.89395 -8.62196 -8.58135 -6.12367 -4.11705 1.82371 2.01580 2.25206 2.57733 2.77046 3.12623 3.23526 3.33559 3.38829 3.65109 4.22442 4.38291 4.42216 4.44773 4.61445 4.68500 4.72756 4.79707 4.81385 4.85235 4.90059 5.01021 5.05170 5.12489 5.16621 5.21387 5.30572 5.36881 5.38414 5.40040 5.46487 5.53722 5.58281 5.67609 5.71744 5.75103 5.92451 6.08203 6.15251 6.18497 6.25935 6.43620 6.47155 6.53556 6.56984 6.80430 7.08672 7.09892 7.25073 7.35317 7.66558 7.83113 8.41756 8.90929 9.02985 9.49260 11.00540 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002338 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.941484 B =11973.607152 C =12365.818220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.171 4.171 3 C 0.143 3.857 4 N -0.461 5.461 5 C 0.212 3.788 6 C -0.023 4.023 7 C -0.003 4.003 8 C -0.522 4.522 9 H 0.076 0.924 10 C 0.071 3.929 11 N -0.898 5.898 12 Si 0.874 3.126 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.265 1.265 16 N -0.296 5.296 17 N -0.311 5.311 18 C 0.324 3.676 19 N -0.458 5.458 20 C 0.070 3.930 21 C -0.122 4.122 22 C 0.141 3.859 23 N -0.727 5.727 24 C 0.509 3.491 25 C -0.175 4.175 26 O -0.544 6.544 27 C -0.120 4.120 28 C 0.071 3.929 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.009 0.991 37 H 0.025 0.975 38 H 0.264 0.736 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.401 0.599 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.432 13.716 11.701 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.189 4.189 3 C 0.020 3.980 4 N -0.153 5.153 5 C -0.055 4.055 6 C -0.063 4.063 7 C -0.041 4.041 8 C -0.560 4.560 9 H 0.094 0.906 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.702 3.298 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.189 1.189 16 N -0.136 5.136 17 N -0.155 5.155 18 C -0.032 4.032 19 N -0.184 5.184 20 C -0.058 4.058 21 C -0.161 4.161 22 C 0.036 3.964 23 N -0.379 5.379 24 C 0.296 3.704 25 C -0.234 4.234 26 O -0.421 6.421 27 C -0.158 4.158 28 C -0.057 4.057 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.028 0.972 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.235 0.765 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.098 0.902 50 H 0.101 0.899 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.058 13.990 12.809 29.858 hybrid contribution -1.277 -1.146 -0.333 1.747 sum -24.335 12.845 12.477 30.213 Atomic orbital electron populations 1.23825 0.95393 1.02031 0.98953 1.23172 0.96371 0.98351 1.01037 1.20898 0.91781 0.97309 0.87970 1.46383 1.10195 1.49632 1.09099 1.25670 0.81410 0.99740 0.98670 1.20257 0.98193 0.99228 0.88632 1.19557 0.96844 0.89255 0.98488 1.21002 1.31769 0.93117 1.10118 0.90587 1.24956 0.94844 0.98365 0.94880 1.69894 1.41033 1.15362 1.27390 0.86855 0.79788 0.81098 0.82092 1.20354 1.21146 1.18931 1.74081 1.22649 1.17558 0.99265 1.74518 0.96811 1.18189 1.25972 1.22078 0.92598 1.05096 0.83468 1.58531 1.18746 1.03422 1.37685 1.22071 0.97003 0.87270 0.99429 1.21976 0.95786 0.99384 0.98993 1.21063 0.83445 0.93447 0.98404 1.46120 1.09050 1.42643 1.40072 1.20849 0.91979 0.78764 0.78815 1.21927 0.93693 1.03664 1.04164 1.90750 1.43983 1.55194 1.52169 1.21866 0.97209 0.95399 1.01333 1.22037 0.94627 0.95342 0.93651 0.88043 0.88283 0.86325 0.88367 0.87553 0.88616 0.90587 0.97227 0.95697 0.92590 0.92549 0.90264 0.90727 0.90438 0.89245 0.76501 0.89418 0.88983 0.89385 0.90201 0.90247 0.89933 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 14.32 29.01 0.42 -1.14 16 2 C -0.17 -2.08 9.85 -36.03 -0.35 -2.44 16 3 C 0.14 1.73 6.50 -5.19 -0.03 1.70 16 4 N -0.46 -7.16 2.79 -115.37 -0.32 -7.48 16 5 C 0.21 3.95 7.32 -154.02 -1.13 2.82 16 6 C -0.02 -0.45 5.52 -27.88 -0.15 -0.60 16 7 C 0.00 -0.07 4.02 -27.88 -0.11 -0.18 16 8 C -0.52 -14.20 9.66 -34.44 -0.33 -14.53 16 9 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 12 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.26 -6.41 6.53 56.52 0.37 -6.05 16 16 N -0.30 -6.10 12.18 32.99 0.40 -5.70 16 17 N -0.31 -5.86 12.18 30.32 0.37 -5.50 16 18 C 0.32 5.02 6.42 -318.86 -2.05 2.97 16 19 N -0.46 -5.30 4.67 -174.55 -0.82 -6.12 16 20 C 0.07 0.75 5.36 -3.83 -0.02 0.72 16 21 C -0.12 -1.01 5.67 -26.65 -0.15 -1.16 16 22 C 0.14 1.09 2.52 -67.81 -0.17 0.92 16 23 N -0.73 -4.23 5.08 -53.69 -0.27 -4.50 16 24 C 0.51 3.98 7.91 -10.99 -0.09 3.89 16 25 C -0.17 -0.66 10.32 36.01 0.37 -0.28 16 26 O -0.54 -6.98 16.75 5.56 0.09 -6.89 16 27 C -0.12 -0.81 5.57 -26.65 -0.15 -0.96 16 28 C 0.07 0.73 5.40 -3.83 -0.02 0.71 16 29 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.10 0.76 7.84 -52.49 -0.41 0.35 16 31 H 0.12 1.76 7.28 -52.49 -0.38 1.37 16 32 H 0.10 0.97 7.79 -51.93 -0.40 0.57 16 33 H 0.11 1.24 7.10 -51.93 -0.37 0.87 16 34 H 0.10 1.86 8.14 -51.92 -0.42 1.43 16 35 H 0.08 1.31 7.17 -51.93 -0.37 0.93 16 36 H 0.01 0.21 6.80 -51.93 -0.35 -0.14 16 37 H 0.02 0.61 7.18 -51.93 -0.37 0.24 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 44 H 0.40 1.14 8.61 -40.82 -0.35 0.78 16 45 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.09 0.41 8.12 -51.93 -0.42 -0.02 16 47 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 51 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 416.97 15.07 6.28 6.28 Total: -1.00 -35.34 416.97 -10.72 -46.06 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.49 Total: -1.07 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -4.07 Total: -5.63 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.13 Total: -55.45 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: 0.09 Total: -6.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.34 -10.72 -46.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121519565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.584 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds