Wall clock time and date at job start Wed Apr 1 2020 05:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00312 * 2 1 4 4 N 1.46500 * 109.47152 * 124.99985 * 3 2 1 5 5 C 1.36733 * 127.13665 * 95.19831 * 4 3 2 6 6 C 1.50698 * 126.34760 * 0.02562 * 5 4 3 7 7 C 1.53002 * 109.47034 * 269.71029 * 6 5 4 8 8 C 1.50708 * 109.47030 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99801 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99662 * 179.72587 * 8 7 6 11 11 N 1.31517 * 119.99761 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00124 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47251 * 90.00254 * 12 10 8 14 14 H 1.48506 * 109.47013 * 209.99722 * 12 10 8 15 15 H 1.48499 * 109.47454 * 329.99984 * 12 10 8 16 16 N 1.30298 * 107.30546 * 179.73520 * 5 4 3 17 17 N 1.28525 * 110.05274 * 0.26356 * 16 5 4 18 18 C 1.31213 * 109.85971 * 0.02562 * 17 16 5 19 19 N 1.38590 * 126.47027 * 180.02562 * 18 17 16 20 20 C 1.46843 * 111.00329 * 59.27383 * 19 18 17 21 21 C 1.53039 * 109.52214 * 174.16231 * 20 19 18 22 22 C 1.53112 * 109.28044 * 59.17845 * 21 20 19 23 23 N 1.46499 * 109.52546 * 182.43768 * 22 21 20 24 24 C 1.34770 * 120.00150 * 274.68700 * 23 22 21 25 25 C 1.50699 * 120.00026 * 179.97438 * 24 23 22 26 26 O 1.21280 * 120.00342 * 359.97438 * 24 23 22 27 27 C 1.53129 * 109.16031 * 302.34455 * 22 21 20 28 28 C 1.46852 * 110.99668 * 295.06001 * 19 18 17 29 29 H 1.07998 * 120.00156 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99606 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99606 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46866 * 5.00523 * 3 2 1 33 33 H 1.08997 * 109.47163 * 244.99936 * 3 2 1 34 34 H 1.09008 * 109.47558 * 149.70833 * 6 5 4 35 35 H 1.09000 * 109.47476 * 29.70879 * 6 5 4 36 36 H 1.09000 * 109.46910 * 60.00144 * 7 6 5 37 37 H 1.08996 * 109.47110 * 299.99766 * 7 6 5 38 38 H 0.96993 * 119.99958 * 179.97438 * 11 10 8 39 39 H 1.09001 * 109.45876 * 294.17948 * 20 19 18 40 40 H 1.08996 * 109.46129 * 54.13947 * 20 19 18 41 41 H 1.08997 * 109.49792 * 299.23644 * 21 20 19 42 42 H 1.09005 * 109.49773 * 179.11799 * 21 20 19 43 43 H 1.09001 * 109.52368 * 62.24685 * 22 21 20 44 44 H 0.97005 * 119.99394 * 94.68169 * 23 22 21 45 45 H 1.08999 * 109.46866 * 59.99972 * 25 24 23 46 46 H 1.08996 * 109.47413 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47499 * 299.99924 * 25 24 23 48 48 H 1.08993 * 109.50155 * 297.71096 * 27 22 21 49 49 H 1.09001 * 109.49874 * 177.59346 * 27 22 21 50 50 H 1.09003 * 109.46321 * 305.85888 * 28 19 18 51 51 H 1.08994 * 109.45849 * 65.82652 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3183 0.9923 1.1193 6 6 5.1072 0.5150 -0.0727 7 6 5.0333 -1.0110 -0.1552 8 6 5.8228 -1.4884 -1.3470 9 1 6.3270 -0.7747 -1.9816 10 6 5.9063 -2.8365 -1.6233 11 7 6.5956 -3.2532 -2.6630 12 14 5.0416 -4.0714 -0.5202 13 1 3.6647 -4.3065 -1.0245 14 1 5.7952 -5.3510 -0.5238 15 1 4.9774 -3.5385 0.8644 16 7 4.7735 1.1639 2.3281 17 7 3.8326 1.5803 3.0983 18 6 2.7174 1.6970 2.4168 19 7 1.4921 2.1188 2.9080 20 6 1.5871 3.4735 3.4667 21 6 0.1923 3.9613 3.8652 22 6 -0.4019 3.0026 4.9006 23 7 -1.7602 3.4319 5.2427 24 6 -1.9519 4.3646 6.1965 25 6 -3.3491 4.8067 6.5480 26 8 -1.0001 4.8482 6.7719 27 6 -0.4450 1.5900 4.3110 28 6 0.9682 1.1709 3.8997 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0897 33 1 2.6214 1.4025 -0.9313 34 1 6.1474 0.8233 0.0328 35 1 4.6902 0.9486 -0.9816 36 1 3.9932 -1.3192 -0.2608 37 1 5.4504 -1.4446 0.7537 38 1 6.6546 -4.2016 -2.8572 39 1 2.2318 3.4594 4.3455 40 1 2.0073 4.1460 2.7190 41 1 -0.4490 3.9887 2.9843 42 1 0.2653 4.9607 4.2943 43 1 0.2183 3.0043 5.7969 44 1 -2.5214 3.0449 4.7826 45 1 -3.9240 3.9495 6.8985 46 1 -3.3048 5.5601 7.3344 47 1 -3.8291 5.2299 5.6656 48 1 -1.0964 1.5801 3.4372 49 1 -0.8275 0.8952 5.0587 50 1 0.9388 0.1711 3.4664 51 1 1.6157 1.1677 4.7764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121519565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:18 Heat of formation + Delta-G solvation = 36.960318 kcal Electronic energy + Delta-G solvation = -31086.979550 eV Core-core repulsion = 27022.028241 eV Total energy + Delta-G solvation = -4064.951309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.08110 -41.06189 -39.65540 -37.23581 -36.45704 -35.82035 -34.06920 -33.67293 -32.84519 -32.08861 -30.67917 -29.65575 -27.79295 -27.25049 -25.22342 -24.41424 -23.45159 -22.40048 -21.99614 -21.52325 -20.84849 -20.62996 -19.11911 -18.51164 -17.86079 -17.58243 -17.33460 -17.06226 -16.38589 -16.20808 -16.09551 -15.82328 -15.37416 -15.11325 -14.97470 -14.77463 -14.75410 -14.58153 -14.48364 -14.33473 -13.55697 -13.48197 -13.39240 -13.30014 -13.00725 -12.98461 -12.75247 -12.64114 -12.48583 -12.31938 -12.27152 -12.05457 -11.99981 -11.87480 -11.73867 -11.55745 -11.42562 -11.10471 -10.90418 -10.79018 -10.48186 -10.08709 -10.05034 -9.94152 -8.31602 -6.35153 0.63162 0.95702 1.28614 1.34402 1.44664 1.55855 1.68787 1.70880 2.24885 2.31916 2.63234 3.03485 3.40252 3.56266 3.67099 3.71760 3.86055 3.89408 3.99295 4.03477 4.05329 4.18712 4.23764 4.24665 4.37094 4.43485 4.50013 4.57535 4.59038 4.66459 4.68251 4.70516 4.72734 4.80378 4.81314 4.88763 4.98523 5.04478 5.05761 5.11905 5.25029 5.26198 5.39515 5.46281 5.51653 5.60311 5.62711 5.65778 5.74008 6.17498 6.22965 6.63796 6.71564 7.29136 7.33518 7.65158 8.84351 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002338 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.941484 B =11973.607152 C =12365.818220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.207 4.207 3 C 0.139 3.861 4 N -0.454 5.454 5 C 0.201 3.799 6 C -0.012 4.012 7 C 0.007 3.993 8 C -0.525 4.525 9 H 0.048 0.952 10 C 0.015 3.985 11 N -0.942 5.942 12 Si 0.937 3.063 13 H -0.259 1.259 14 H -0.283 1.283 15 H -0.264 1.264 16 N -0.332 5.332 17 N -0.349 5.349 18 C 0.343 3.657 19 N -0.441 5.441 20 C 0.072 3.928 21 C -0.109 4.109 22 C 0.144 3.856 23 N -0.710 5.710 24 C 0.502 3.498 25 C -0.166 4.166 26 O -0.604 6.604 27 C -0.103 4.103 28 C 0.069 3.931 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.020 0.980 37 H 0.006 0.994 38 H 0.267 0.733 39 H 0.032 0.968 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.421 0.579 45 H 0.112 0.888 46 H 0.081 0.919 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.096 0.904 50 H 0.078 0.922 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.347 13.970 11.796 34.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.226 4.226 3 C 0.019 3.981 4 N -0.145 5.145 5 C -0.068 4.068 6 C -0.051 4.051 7 C -0.031 4.031 8 C -0.563 4.563 9 H 0.066 0.934 10 C -0.183 4.183 11 N -0.582 5.582 12 Si 0.762 3.238 13 H -0.184 1.184 14 H -0.209 1.209 15 H -0.189 1.189 16 N -0.172 5.172 17 N -0.193 5.193 18 C -0.014 4.014 19 N -0.167 5.167 20 C -0.056 4.056 21 C -0.148 4.148 22 C 0.038 3.962 23 N -0.362 5.362 24 C 0.291 3.709 25 C -0.225 4.225 26 O -0.485 6.485 27 C -0.141 4.141 28 C -0.059 4.059 29 H 0.130 0.870 30 H 0.146 0.854 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.039 0.961 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.259 0.741 45 H 0.130 0.870 46 H 0.100 0.900 47 H 0.132 0.868 48 H 0.125 0.875 49 H 0.114 0.886 50 H 0.096 0.904 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -28.032 14.233 12.872 33.971 hybrid contribution 0.187 -1.162 -0.374 1.235 sum -27.844 13.071 12.498 33.202 Atomic orbital electron populations 1.24110 0.94210 1.03862 0.94244 1.22944 0.97348 0.96895 1.05412 1.21221 0.91689 0.98548 0.86689 1.46551 1.09545 1.48472 1.09960 1.25293 0.82837 1.00836 0.97812 1.19983 0.98345 0.96714 0.90105 1.19366 0.96328 0.91856 0.95573 1.21284 1.31438 0.92808 1.10759 0.93381 1.25789 0.95732 1.00507 0.96235 1.70023 1.42908 1.15973 1.29326 0.85849 0.79447 0.78471 0.80045 1.18400 1.20857 1.18865 1.73973 1.24262 1.18661 1.00317 1.74444 0.97878 1.20110 1.26825 1.22492 0.93023 1.02588 0.83306 1.58859 1.16013 1.03932 1.37931 1.22078 0.98420 0.86752 0.98328 1.21860 0.94401 0.98680 0.99821 1.20870 0.84167 0.94121 0.97045 1.45936 1.08850 1.41896 1.39520 1.21642 0.92954 0.78140 0.78133 1.21926 0.91140 1.04420 1.05024 1.90735 1.46135 1.57336 1.54310 1.21775 0.94946 0.94674 1.02684 1.22126 0.96436 0.95009 0.92329 0.87040 0.85399 0.89594 0.85390 0.87418 0.89467 0.88551 0.96141 0.97547 0.92376 0.94953 0.90458 0.88426 0.91547 0.92376 0.74134 0.86975 0.89955 0.86844 0.87547 0.88570 0.90378 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 14.32 67.78 0.97 -0.87 16 2 C -0.21 -4.55 9.85 25.65 0.25 -4.30 16 3 C 0.14 3.05 6.50 85.63 0.56 3.60 16 4 N -0.45 -13.71 2.79 -518.91 -1.45 -15.16 16 5 C 0.20 7.56 7.32 137.64 1.01 8.57 16 6 C -0.01 -0.46 5.52 29.85 0.16 -0.29 16 7 C 0.01 0.34 4.02 29.85 0.12 0.46 16 8 C -0.52 -29.22 9.66 25.60 0.25 -28.97 16 9 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 10 C 0.02 0.88 5.47 84.65 0.46 1.34 16 11 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 12 Si 0.94 44.34 27.47 68.60 1.88 46.22 16 13 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 15 H -0.26 -12.37 6.53 99.48 0.65 -11.72 16 16 N -0.33 -14.12 12.18 -49.54 -0.60 -14.72 16 17 N -0.35 -13.49 12.18 -58.00 -0.71 -14.20 16 18 C 0.34 10.46 6.42 260.11 1.67 12.13 16 19 N -0.44 -9.47 4.67 -706.15 -3.30 -12.76 16 20 C 0.07 1.47 5.36 86.33 0.46 1.93 16 21 C -0.11 -1.57 5.67 30.64 0.17 -1.40 16 22 C 0.14 1.92 2.52 45.07 0.11 2.04 16 23 N -0.71 -6.04 5.08 -442.16 -2.25 -8.28 16 24 C 0.50 6.90 7.91 87.66 0.69 7.60 16 25 C -0.17 -0.73 10.32 71.24 0.74 0.01 16 26 O -0.60 -15.56 16.75 -3.03 -0.05 -15.61 16 27 C -0.10 -1.04 5.57 30.65 0.17 -0.87 16 28 C 0.07 1.30 5.40 86.32 0.47 1.77 16 29 H 0.11 1.44 8.06 -2.91 -0.02 1.41 16 30 H 0.13 1.16 7.84 -2.91 -0.02 1.14 16 31 H 0.09 2.47 7.28 -2.91 -0.02 2.45 16 32 H 0.13 2.02 7.79 -2.39 -0.02 2.00 16 33 H 0.11 2.31 7.10 -2.39 -0.02 2.29 16 34 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 35 H 0.10 3.31 7.17 -2.39 -0.02 3.29 16 36 H 0.02 0.91 6.80 -2.39 -0.02 0.90 16 37 H 0.01 0.31 7.18 -2.39 -0.02 0.29 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.06 1.19 7.58 -2.39 -0.02 1.17 16 44 H 0.42 0.36 8.61 -92.70 -0.80 -0.44 16 45 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 47 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 48 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 51 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -82.19 416.97 2.17 -80.02 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.07 Total: 9.11 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 8.27 Total: 2.73 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -8.00 Total: -122.48 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.05 Total: -15.61 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -82.19 2.17 -80.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121519565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.982 kcal (2) G-P(sol) polarization free energy of solvation -82.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds