Wall clock time and date at job start Wed Apr 1 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47486 * 2 1 4 4 C 1.36939 * 119.99593 * 275.73000 * 3 2 1 5 5 H 1.08004 * 120.00085 * 33.26902 * 4 3 2 6 6 C 1.38812 * 119.99880 * 213.27343 * 4 3 2 7 7 N 1.31617 * 119.99989 * 17.26416 * 6 4 3 8 8 Si 1.86800 * 119.99668 * 197.27465 * 6 4 3 9 9 H 1.48494 * 109.47301 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47145 * 119.99901 * 8 6 4 11 11 H 1.48504 * 109.46856 * 239.99031 * 8 6 4 12 12 C 1.46493 * 120.00180 * 95.73313 * 3 2 1 13 13 H 1.09005 * 109.47076 * 180.08786 * 12 3 2 14 14 C 1.52998 * 109.47501 * 60.08346 * 12 3 2 15 15 C 1.53007 * 109.47088 * 300.08283 * 12 3 2 16 16 N 1.46508 * 109.46863 * 305.00234 * 15 12 3 17 17 C 1.34778 * 119.99714 * 180.02562 * 16 15 12 18 18 O 1.21473 * 119.99835 * 359.97438 * 17 16 15 19 19 C 1.48436 * 119.99764 * 180.02562 * 17 16 15 20 20 C 1.39079 * 120.51108 * 179.72270 * 19 17 16 21 21 C 1.39852 * 118.19455 * 179.73575 * 20 19 17 22 22 N 1.38514 * 120.51466 * 180.23657 * 21 20 19 23 23 C 1.48527 * 110.99687 * 62.90743 * 22 21 20 24 24 C 1.54934 * 103.22859 * 159.72316 * 23 22 21 25 25 C 1.54602 * 102.91584 * 322.58270 * 24 23 22 26 26 C 1.47896 * 110.99744 * 180.29996 * 22 21 20 27 27 N 1.32839 * 118.97003 * 0.53317 * 21 20 19 28 28 C 1.31839 * 120.91087 * 359.72787 * 27 21 20 29 29 N 1.31557 * 122.01298 * 359.97438 * 28 27 21 30 30 H 1.08999 * 109.47165 * 300.00549 * 1 2 3 31 31 H 1.08999 * 109.46895 * 60.00030 * 1 2 3 32 32 H 1.08999 * 109.47418 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47165 * 239.99450 * 2 1 3 34 34 H 1.09004 * 109.46906 * 119.99488 * 2 1 3 35 35 H 0.97001 * 119.99864 * 180.02562 * 7 6 4 36 36 H 1.08996 * 109.47209 * 59.99871 * 14 12 3 37 37 H 1.08998 * 109.46993 * 180.02562 * 14 12 3 38 38 H 1.09002 * 109.46842 * 300.00150 * 14 12 3 39 39 H 1.08999 * 109.47180 * 185.00608 * 15 12 3 40 40 H 1.08997 * 109.47057 * 64.99586 * 15 12 3 41 41 H 0.96999 * 119.99686 * 0.02562 * 16 15 12 42 42 H 1.08000 * 120.90041 * 359.97438 * 20 19 17 43 43 H 1.09005 * 110.66699 * 278.15382 * 23 22 21 44 44 H 1.08995 * 110.67464 * 41.27946 * 23 22 21 45 45 H 1.09002 * 110.72580 * 204.22607 * 24 23 22 46 46 H 1.09002 * 110.88222 * 81.00909 * 24 23 22 47 47 H 1.08997 * 110.30668 * 263.03834 * 25 24 23 48 48 H 1.09003 * 110.30282 * 140.87745 * 25 24 23 49 49 H 1.08995 * 109.92512 * 333.51102 * 26 22 21 50 50 H 1.09005 * 109.92007 * 94.80401 * 26 22 21 51 51 H 1.08005 * 118.99333 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0661 -1.1800 5 1 1.4371 1.8809 -1.9832 6 6 3.1503 2.9984 -1.3440 7 7 4.1873 2.9915 -0.5334 8 14 3.0447 4.2629 -2.7149 9 1 1.7889 4.0590 -3.4808 10 1 3.0526 5.6281 -2.1307 11 1 4.2091 4.1065 -3.6233 12 6 2.3821 2.0295 1.2623 13 1 2.7191 3.0471 1.0642 14 6 3.5077 1.2412 1.9349 15 6 1.1630 2.0669 2.1862 16 7 0.0467 2.7176 1.4956 17 6 -1.1385 2.8643 2.1203 18 8 -1.2813 2.4566 3.2556 19 6 -2.2697 3.5230 1.4204 20 6 -3.4991 3.6748 2.0527 21 6 -4.5297 4.3076 1.3504 22 7 -5.7720 4.4885 1.9358 23 6 -5.6748 5.3668 3.1297 24 6 -7.1273 5.8724 3.3170 25 6 -7.6159 6.0662 1.8631 26 6 -6.7007 5.1702 1.0083 27 7 -4.3006 4.7270 0.1109 28 6 -3.1214 4.5584 -0.4540 29 7 -2.1244 3.9737 0.1742 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.8966 3.6432 -0.6478 36 1 4.3761 1.2145 1.2767 37 1 3.7779 1.7234 2.8743 38 1 3.1706 0.2237 2.1329 39 1 1.4081 2.6271 3.0886 40 1 0.8800 1.0494 2.4557 41 1 0.1607 3.0427 0.5889 42 1 -3.6525 3.3173 3.0602 43 1 -5.3504 4.7974 4.0007 44 1 -4.9987 6.2004 2.9402 45 1 -7.1396 6.8189 3.8575 46 1 -7.7345 5.1279 3.8319 47 1 -7.5104 7.1092 1.5644 48 1 -8.6540 5.7477 1.7673 49 1 -6.1385 5.7805 0.3016 50 1 -7.2983 4.4327 0.4725 51 1 -2.9693 4.9111 -1.4635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155231749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:25 Heat of formation + Delta-G solvation = 51.716629 kcal Electronic energy + Delta-G solvation = -31534.212686 eV Core-core repulsion = 27469.901258 eV Total energy + Delta-G solvation = -4064.311428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.48887 -39.50500 -38.67787 -36.91225 -34.26868 -33.61521 -32.76578 -31.84213 -31.02139 -30.17390 -29.37968 -28.16329 -26.40316 -24.39781 -24.21678 -23.89241 -22.15448 -21.66288 -21.22206 -20.18683 -19.29262 -18.20716 -17.79190 -16.92085 -16.47857 -15.95105 -15.52595 -15.43966 -15.31446 -14.94285 -14.74595 -14.54159 -14.26553 -13.95863 -13.69691 -13.44223 -13.14626 -12.96968 -12.68179 -12.59699 -12.33279 -12.14259 -11.83278 -11.79313 -11.62663 -11.50968 -11.10995 -11.04707 -11.00579 -10.92343 -10.79061 -10.73603 -10.69893 -10.24939 -10.10091 -10.06279 -10.00105 -9.62898 -9.43031 -9.29479 -8.80894 -8.51169 -8.44109 -6.64795 -5.85162 -3.33284 0.53991 0.84352 2.90525 3.12704 3.34437 3.43193 3.44122 3.46165 3.85482 3.94597 4.07668 4.23900 4.41195 4.46123 4.54346 4.78167 4.88791 4.96161 5.04059 5.22359 5.29427 5.33129 5.39843 5.40815 5.41494 5.49649 5.57479 5.63788 5.76705 5.87900 6.03632 6.07019 6.11879 6.16564 6.25254 6.38014 6.47494 6.54985 6.61445 6.67511 6.68883 6.83481 6.84051 6.93606 6.99506 7.18706 7.48104 7.57672 7.81959 7.88442 8.11894 8.46043 8.57616 9.19030 9.80219 10.36811 11.21667 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002882 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.151261 B = 9714.037989 C =10709.577467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.257 4.257 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.292 1.292 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.097 3.903 16 N -0.670 5.670 17 C 0.556 3.444 18 O -0.545 6.545 19 C 0.154 3.846 20 C -0.180 4.180 21 C 0.343 3.657 22 N -0.459 5.459 23 C 0.042 3.958 24 C -0.123 4.123 25 C -0.133 4.133 26 C 0.034 3.966 27 N -0.549 5.549 28 C 0.319 3.681 29 N -0.503 5.503 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.253 0.747 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.424 0.576 42 H 0.158 0.842 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.739 5.477 5.919 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.387 4.387 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.219 1.219 12 C 0.068 3.932 13 H 0.119 0.881 14 C -0.203 4.203 15 C -0.028 4.028 16 N -0.320 5.320 17 C 0.339 3.661 18 O -0.424 6.424 19 C 0.008 3.992 20 C -0.205 4.205 21 C 0.101 3.899 22 N -0.177 5.177 23 C -0.083 4.083 24 C -0.161 4.161 25 C -0.171 4.171 26 C -0.093 4.093 27 N -0.269 5.269 28 C 0.030 3.970 29 N -0.221 5.221 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.263 0.737 42 H 0.175 0.825 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.103 0.897 51 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -18.677 5.064 5.956 20.247 hybrid contribution 0.151 1.080 -0.675 1.283 sum -18.526 6.144 5.281 20.220 Atomic orbital electron populations 1.22441 1.00072 0.98888 1.01514 1.20757 0.91606 0.87429 0.98757 1.43887 1.75904 1.08287 1.02278 1.19124 1.08349 1.17951 0.93250 0.91779 1.25138 0.94542 1.01347 0.97891 1.70014 1.07931 1.35964 1.39669 0.86320 0.77553 0.81616 0.81871 1.20044 1.21599 1.21875 1.20506 0.88725 0.99718 0.84207 0.88119 1.22018 1.01100 0.97929 0.99247 1.22341 0.88013 0.96426 0.96027 1.45921 1.09967 1.56505 1.19628 1.17785 0.82596 0.80164 0.85567 1.90743 1.82966 1.50946 1.17719 1.21678 0.93809 0.93420 0.90245 1.22345 0.92564 1.01987 1.03639 1.20162 0.89573 0.90506 0.89625 1.61737 1.04902 1.43556 1.07520 1.23382 0.98253 0.94671 0.92011 1.22519 0.94758 1.01787 0.97047 1.22461 0.99992 0.99933 0.94730 1.22943 0.93920 0.97393 0.95024 1.68234 1.25197 1.21519 1.11959 1.24829 0.82470 0.90119 0.99598 1.68485 1.34168 1.11242 1.08168 0.93287 0.93345 0.94900 0.94034 0.94495 0.93680 0.90183 0.94810 0.95111 0.92497 0.92378 0.73693 0.82470 0.88604 0.92367 0.90244 0.90141 0.91035 0.90556 0.89701 0.89748 0.78112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 9.87 37.16 0.37 -2.81 16 2 C 0.14 2.88 5.67 -4.04 -0.02 2.86 16 3 N -0.58 -13.19 1.85 -165.66 -0.31 -13.50 16 4 C -0.26 -6.46 9.26 -15.06 -0.14 -6.60 16 5 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 6 C 0.01 0.27 4.85 -17.43 -0.08 0.19 16 7 N -0.89 -23.78 10.60 55.49 0.59 -23.19 16 8 Si 0.90 20.61 29.59 -169.99 -5.03 15.58 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.18 3.78 1.92 -67.93 -0.13 3.65 16 13 H 0.10 2.47 6.04 -51.93 -0.31 2.15 16 14 C -0.14 -2.92 9.05 37.16 0.34 -2.58 16 15 C 0.10 1.88 4.34 -4.03 -0.02 1.86 16 16 N -0.67 -12.79 3.98 -61.05 -0.24 -13.03 16 17 C 0.56 10.27 7.59 -12.06 -0.09 10.18 16 18 O -0.55 -10.95 16.42 5.39 0.09 -10.86 16 19 C 0.15 2.52 6.79 -82.71 -0.56 1.96 16 20 C -0.18 -2.56 9.14 -38.67 -0.35 -2.91 16 21 C 0.34 4.45 6.21 -154.85 -0.96 3.49 16 22 N -0.46 -4.91 5.30 -169.05 -0.90 -5.81 16 23 C 0.04 0.36 6.09 -1.90 -0.01 0.34 16 24 C -0.12 -0.76 7.06 -24.87 -0.18 -0.94 16 25 C -0.13 -0.86 6.93 -25.37 -0.18 -1.03 16 26 C 0.03 0.31 6.36 -2.76 -0.02 0.29 16 27 N -0.55 -7.15 8.28 -13.83 -0.11 -7.27 16 28 C 0.32 4.26 12.27 -92.32 -1.13 3.13 16 29 N -0.50 -8.00 9.70 -11.22 -0.11 -8.11 16 30 H 0.05 0.94 4.99 -51.93 -0.26 0.69 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.04 0.72 6.45 -51.93 -0.33 0.39 16 35 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 36 H 0.08 1.85 7.39 -51.93 -0.38 1.46 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.13 7.05 -51.93 -0.37 0.77 16 41 H 0.42 8.61 7.28 -40.82 -0.30 8.31 16 42 H 0.16 2.13 7.73 -52.49 -0.41 1.72 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.51 7.99 -51.93 -0.42 0.10 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.85 6.53 -51.93 -0.34 0.52 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.20 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 402.32 15.07 6.06 6.06 Total: -1.00 -28.43 402.32 -11.21 -39.64 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -8.08 Total: 9.42 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -3.17 Total: 11.07 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.08 Total: -70.91 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -28.43 -11.21 -39.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155231749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.356 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds