Wall clock time and date at job start Wed Apr 1 2020 05:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47486 * 2 1 4 4 C 1.36939 * 119.99593 * 275.73000 * 3 2 1 5 5 H 1.08004 * 120.00085 * 33.26902 * 4 3 2 6 6 C 1.38812 * 119.99880 * 213.27343 * 4 3 2 7 7 N 1.31617 * 119.99989 * 17.26416 * 6 4 3 8 8 Si 1.86800 * 119.99668 * 197.27465 * 6 4 3 9 9 H 1.48494 * 109.47301 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47145 * 119.99901 * 8 6 4 11 11 H 1.48504 * 109.46856 * 239.99031 * 8 6 4 12 12 C 1.46493 * 120.00180 * 95.73313 * 3 2 1 13 13 H 1.09005 * 109.47076 * 180.08786 * 12 3 2 14 14 C 1.52998 * 109.47501 * 60.08346 * 12 3 2 15 15 C 1.53007 * 109.47088 * 300.08283 * 12 3 2 16 16 N 1.46508 * 109.46863 * 305.00234 * 15 12 3 17 17 C 1.34778 * 119.99714 * 180.02562 * 16 15 12 18 18 O 1.21473 * 119.99835 * 359.97438 * 17 16 15 19 19 C 1.48436 * 119.99764 * 180.02562 * 17 16 15 20 20 C 1.39079 * 120.51108 * 179.72270 * 19 17 16 21 21 C 1.39852 * 118.19455 * 179.73575 * 20 19 17 22 22 N 1.38514 * 120.51466 * 180.23657 * 21 20 19 23 23 C 1.48527 * 110.99687 * 62.90743 * 22 21 20 24 24 C 1.54934 * 103.22859 * 159.72316 * 23 22 21 25 25 C 1.54602 * 102.91584 * 322.58270 * 24 23 22 26 26 C 1.47896 * 110.99744 * 180.29996 * 22 21 20 27 27 N 1.32839 * 118.97003 * 0.53317 * 21 20 19 28 28 C 1.31839 * 120.91087 * 359.72787 * 27 21 20 29 29 N 1.31557 * 122.01298 * 359.97438 * 28 27 21 30 30 H 1.08999 * 109.47165 * 300.00549 * 1 2 3 31 31 H 1.08999 * 109.46895 * 60.00030 * 1 2 3 32 32 H 1.08999 * 109.47418 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47165 * 239.99450 * 2 1 3 34 34 H 1.09004 * 109.46906 * 119.99488 * 2 1 3 35 35 H 0.97001 * 119.99864 * 180.02562 * 7 6 4 36 36 H 1.08996 * 109.47209 * 59.99871 * 14 12 3 37 37 H 1.08998 * 109.46993 * 180.02562 * 14 12 3 38 38 H 1.09002 * 109.46842 * 300.00150 * 14 12 3 39 39 H 1.08999 * 109.47180 * 185.00608 * 15 12 3 40 40 H 1.08997 * 109.47057 * 64.99586 * 15 12 3 41 41 H 0.96999 * 119.99686 * 0.02562 * 16 15 12 42 42 H 1.08000 * 120.90041 * 359.97438 * 20 19 17 43 43 H 1.09005 * 110.66699 * 278.15382 * 23 22 21 44 44 H 1.08995 * 110.67464 * 41.27946 * 23 22 21 45 45 H 1.09002 * 110.72580 * 204.22607 * 24 23 22 46 46 H 1.09002 * 110.88222 * 81.00909 * 24 23 22 47 47 H 1.08997 * 110.30668 * 263.03834 * 25 24 23 48 48 H 1.09003 * 110.30282 * 140.87745 * 25 24 23 49 49 H 1.08995 * 109.92512 * 333.51102 * 26 22 21 50 50 H 1.09005 * 109.92007 * 94.80401 * 26 22 21 51 51 H 1.08005 * 118.99333 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0661 -1.1800 5 1 1.4371 1.8809 -1.9832 6 6 3.1503 2.9984 -1.3440 7 7 4.1873 2.9915 -0.5334 8 14 3.0447 4.2629 -2.7149 9 1 1.7889 4.0590 -3.4808 10 1 3.0526 5.6281 -2.1307 11 1 4.2091 4.1065 -3.6233 12 6 2.3821 2.0295 1.2623 13 1 2.7191 3.0471 1.0642 14 6 3.5077 1.2412 1.9349 15 6 1.1630 2.0669 2.1862 16 7 0.0467 2.7176 1.4956 17 6 -1.1385 2.8643 2.1203 18 8 -1.2813 2.4566 3.2556 19 6 -2.2697 3.5230 1.4204 20 6 -3.4991 3.6748 2.0527 21 6 -4.5297 4.3076 1.3504 22 7 -5.7720 4.4885 1.9358 23 6 -5.6748 5.3668 3.1297 24 6 -7.1273 5.8724 3.3170 25 6 -7.6159 6.0662 1.8631 26 6 -6.7007 5.1702 1.0083 27 7 -4.3006 4.7270 0.1109 28 6 -3.1214 4.5584 -0.4540 29 7 -2.1244 3.9737 0.1742 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.8966 3.6432 -0.6478 36 1 4.3761 1.2145 1.2767 37 1 3.7779 1.7234 2.8743 38 1 3.1706 0.2237 2.1329 39 1 1.4081 2.6271 3.0886 40 1 0.8800 1.0494 2.4557 41 1 0.1607 3.0427 0.5889 42 1 -3.6525 3.3173 3.0602 43 1 -5.3504 4.7974 4.0007 44 1 -4.9987 6.2004 2.9402 45 1 -7.1396 6.8189 3.8575 46 1 -7.7345 5.1279 3.8319 47 1 -7.5104 7.1092 1.5644 48 1 -8.6540 5.7477 1.7673 49 1 -6.1385 5.7805 0.3016 50 1 -7.2983 4.4327 0.4725 51 1 -2.9693 4.9111 -1.4635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155231749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:24 Heat of formation + Delta-G solvation = 36.877654 kcal Electronic energy + Delta-G solvation = -31534.856152 eV Core-core repulsion = 27469.901258 eV Total energy + Delta-G solvation = -4064.954894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.54289 -40.77077 -39.69157 -38.59745 -35.48964 -34.96955 -33.80290 -33.68428 -32.65281 -31.06846 -30.07196 -29.92098 -27.81543 -25.81034 -25.56229 -25.25158 -23.40872 -22.95827 -21.86529 -21.41334 -21.00450 -19.49638 -18.80901 -18.64119 -17.49421 -17.08335 -16.77305 -16.70559 -16.55083 -16.45919 -16.11062 -15.81092 -15.53667 -15.31905 -14.93057 -14.70522 -14.33535 -14.20605 -13.98526 -13.81045 -13.63290 -13.50819 -13.30357 -13.18751 -12.81398 -12.68837 -12.55731 -12.41931 -12.37650 -12.22871 -12.07782 -12.01385 -11.87569 -11.83625 -11.53965 -11.40969 -11.36715 -11.16486 -11.11670 -10.46150 -10.41954 -10.01011 -9.70999 -8.51465 -7.80251 -5.29582 -0.64059 -0.19882 1.49333 1.54762 1.62171 1.62724 1.94499 2.32595 2.56746 2.69856 2.92513 3.07117 3.34533 3.49780 3.64997 3.67816 3.77988 3.80344 4.07614 4.12871 4.23825 4.26148 4.43425 4.44436 4.46391 4.54848 4.63027 4.66303 4.80410 4.82828 4.86037 4.88944 4.91954 4.93885 4.96747 5.05700 5.10731 5.12784 5.16922 5.21989 5.31148 5.38343 5.43498 5.57139 5.70691 5.75655 5.77703 5.84050 5.90141 6.49322 6.54803 6.88793 7.07567 7.26840 7.94382 8.46005 9.23811 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002882 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.151261 B = 9714.037989 C =10709.577467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.255 4.255 5 H 0.057 0.943 6 C -0.032 4.032 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.293 1.293 11 H -0.299 1.299 12 C 0.181 3.819 13 H 0.070 0.930 14 C -0.134 4.134 15 C 0.109 3.891 16 N -0.674 5.674 17 C 0.559 3.441 18 O -0.565 6.565 19 C 0.137 3.863 20 C -0.179 4.179 21 C 0.349 3.651 22 N -0.464 5.464 23 C 0.037 3.963 24 C -0.116 4.116 25 C -0.127 4.127 26 C 0.030 3.970 27 N -0.546 5.546 28 C 0.320 3.680 29 N -0.528 5.528 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.048 0.952 35 H 0.248 0.752 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.418 0.582 42 H 0.161 0.839 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 5.955 6.298 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.386 4.386 5 H 0.075 0.925 6 C -0.229 4.229 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.220 1.220 11 H -0.227 1.227 12 C 0.074 3.926 13 H 0.088 0.912 14 C -0.193 4.193 15 C -0.016 4.016 16 N -0.322 5.322 17 C 0.343 3.657 18 O -0.445 6.445 19 C -0.007 4.007 20 C -0.205 4.205 21 C 0.106 3.894 22 N -0.183 5.183 23 C -0.088 4.088 24 C -0.154 4.154 25 C -0.165 4.165 26 C -0.096 4.096 27 N -0.267 5.267 28 C 0.031 3.969 29 N -0.246 5.246 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.256 0.744 42 H 0.179 0.821 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.101 0.899 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -21.088 5.533 6.346 22.707 hybrid contribution 0.784 0.907 -0.781 1.431 sum -20.304 6.440 5.564 22.016 Atomic orbital electron populations 1.22252 0.98516 1.00083 1.00508 1.20825 0.92631 0.86247 0.98851 1.43997 1.76054 1.09182 1.02044 1.19212 1.07619 1.17919 0.93804 0.92523 1.25665 0.94549 1.02897 0.99773 1.70134 1.08371 1.36393 1.40990 0.85478 0.77266 0.79534 0.79750 1.19256 1.22040 1.22664 1.20368 0.89867 0.98101 0.84282 0.91233 1.21872 0.99425 0.98812 0.99221 1.22113 0.87273 0.96694 0.95534 1.45888 1.10282 1.56763 1.19303 1.18045 0.82764 0.79607 0.85324 1.90717 1.83371 1.51837 1.18529 1.21381 0.93702 0.94773 0.90893 1.22368 0.92244 1.02110 1.03799 1.20382 0.90036 0.89503 0.89481 1.61766 1.03837 1.44227 1.08461 1.23529 0.99965 0.94223 0.91071 1.22540 0.92927 1.02787 0.97133 1.22461 1.00032 0.99825 0.94211 1.23027 0.93870 0.97557 0.95123 1.68363 1.24951 1.21355 1.12015 1.25407 0.82010 0.89133 1.00391 1.68450 1.35423 1.12484 1.08249 0.93918 0.94614 0.92559 0.94918 0.93348 0.94282 0.93206 0.92960 0.93694 0.91865 0.92196 0.74387 0.82113 0.88191 0.92815 0.88409 0.89518 0.90144 0.89172 0.90721 0.89890 0.75353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 9.87 71.98 0.71 -4.90 16 2 C 0.14 5.63 5.67 86.38 0.49 6.12 16 3 N -0.59 -26.86 1.85 -678.03 -1.25 -28.12 16 4 C -0.26 -12.92 9.26 84.03 0.78 -12.14 16 5 H 0.06 2.92 7.89 -2.91 -0.02 2.90 16 6 C -0.03 -1.64 4.85 84.86 0.41 -1.23 16 7 N -0.91 -49.65 10.60 21.65 0.23 -49.42 16 8 Si 0.95 42.89 29.59 68.60 2.03 44.92 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 12 C 0.18 7.82 1.92 44.99 0.09 7.90 16 13 H 0.07 3.48 6.04 -2.38 -0.01 3.47 16 14 C -0.13 -5.41 9.05 71.98 0.65 -4.75 16 15 C 0.11 4.18 4.34 86.38 0.37 4.56 16 16 N -0.67 -25.77 3.98 -465.38 -1.85 -27.63 16 17 C 0.56 20.63 7.59 86.96 0.66 21.29 16 18 O -0.56 -22.56 16.42 -3.63 -0.06 -22.62 16 19 C 0.14 4.47 6.79 41.84 0.28 4.75 16 20 C -0.18 -5.01 9.14 22.86 0.21 -4.80 16 21 C 0.35 8.66 6.21 133.27 0.83 9.49 16 22 N -0.46 -9.21 5.30 -688.77 -3.65 -12.86 16 23 C 0.04 0.55 6.09 86.65 0.53 1.08 16 24 C -0.12 -1.10 7.06 31.80 0.22 -0.88 16 25 C -0.13 -1.28 6.93 31.47 0.22 -1.07 16 26 C 0.03 0.50 6.36 86.45 0.55 1.05 16 27 N -0.55 -13.58 8.28 -197.65 -1.64 -15.22 16 28 C 0.32 8.18 12.27 180.94 2.22 10.40 16 29 N -0.53 -16.62 9.70 -189.41 -1.84 -18.46 16 30 H 0.04 1.60 4.99 -2.39 -0.01 1.59 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.03 1.36 8.09 -2.39 -0.02 1.34 16 34 H 0.05 1.83 6.45 -2.38 -0.02 1.81 16 35 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 36 H 0.05 2.31 7.39 -2.39 -0.02 2.30 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.64 6.67 -2.39 -0.02 1.63 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.06 2.28 7.05 -2.39 -0.02 2.26 16 41 H 0.42 17.18 7.28 -92.71 -0.67 16.51 16 42 H 0.16 4.28 7.73 -2.91 -0.02 4.26 16 43 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.05 0.87 7.99 -2.39 -0.02 0.85 16 45 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.07 1.39 6.53 -2.39 -0.02 1.37 16 50 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 51 H 0.23 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -60.96 402.32 1.46 -59.50 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.27 Total: 33.02 kcal Atomic # 6 Polarization: 27.65 SS G_CDS: 9.22 Total: 36.88 kcal Atomic # 7 Polarization: -141.70 SS G_CDS: -10.00 Total: -151.70 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.62 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -60.96 1.46 -59.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155231749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.381 kcal (2) G-P(sol) polarization free energy of solvation -60.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds