Wall clock time and date at job start Wed Apr 1 2020 05:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21554 * 120.00276 * 0.02562 * 17 16 15 19 19 C 1.47860 * 120.00018 * 180.02562 * 17 16 15 20 20 C 1.40070 * 120.09518 * 179.97438 * 19 17 16 21 21 C 1.38288 * 117.98951 * 179.97438 * 20 19 17 22 22 C 1.39593 * 118.03294 * 359.97438 * 21 20 19 23 23 N 1.38504 * 120.05329 * 179.97438 * 22 21 20 24 24 C 1.48538 * 111.00008 * 62.60076 * 23 22 21 25 25 C 1.54936 * 103.22702 * 159.72495 * 24 23 22 26 26 C 1.54595 * 102.91917 * 322.58754 * 25 24 23 27 27 C 1.47898 * 111.00543 * 180.02562 * 23 22 21 28 28 N 1.32862 * 119.90394 * 359.97438 * 22 21 20 29 29 N 1.28354 * 122.15993 * 359.73543 * 28 22 21 30 30 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 32 32 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 34 34 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 35 35 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 37 37 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 38 38 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 39 39 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 40 40 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 41 41 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 42 42 H 1.07998 * 121.00721 * 359.97438 * 20 19 17 43 43 H 1.08002 * 120.98213 * 179.97438 * 21 20 19 44 44 H 1.08999 * 110.66541 * 278.15875 * 24 23 22 45 45 H 1.09001 * 110.66209 * 41.29218 * 24 23 22 46 46 H 1.09000 * 110.72241 * 204.23311 * 25 24 23 47 47 H 1.09001 * 110.72352 * 80.94333 * 25 24 23 48 48 H 1.09004 * 110.31276 * 263.03876 * 26 25 24 49 49 H 1.09004 * 110.30689 * 140.87829 * 26 25 24 50 50 H 1.09001 * 109.91445 * 333.50475 * 27 23 22 51 51 H 1.08992 * 109.91891 * 94.79936 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6594 -0.2030 -2.6238 19 6 6.7952 0.0478 -0.5970 20 6 7.9005 -0.6952 -1.0308 21 6 8.9515 -0.8700 -0.1493 22 6 8.8471 -0.2950 1.1184 23 7 9.8750 -0.4443 2.0346 24 6 11.1261 0.1838 1.5381 25 6 11.9555 0.3915 2.8301 26 6 10.8818 0.7845 3.8707 27 6 9.5559 0.2412 3.3057 28 7 7.7601 0.3958 1.4449 29 7 6.7859 0.5638 0.6263 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.3122 5.0279 0.2067 36 1 0.7445 1.1534 -2.3541 37 1 0.3853 2.7441 -1.6406 38 1 1.4122 2.6307 -3.0896 39 1 3.0183 0.2298 -2.2607 40 1 3.7790 1.7183 -2.8724 41 1 4.5728 1.3525 -0.1869 42 1 7.9309 -1.1189 -2.0238 43 1 9.8273 -1.4347 -0.4333 44 1 11.6453 -0.4840 0.8508 45 1 10.9129 1.1399 1.0599 46 1 12.6785 1.1966 2.6991 47 1 12.4544 -0.5329 3.1210 48 1 10.8335 1.8686 3.9737 49 1 11.1004 0.3217 4.8331 50 1 8.8663 1.0647 3.1204 51 1 9.1144 -0.4656 4.0081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156341802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:16 Heat of formation + Delta-G solvation = 60.278799 kcal Electronic energy + Delta-G solvation = -31286.867257 eV Core-core repulsion = 27222.927113 eV Total energy + Delta-G solvation = -4063.940144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.48028 -39.52980 -38.59526 -36.88937 -34.06438 -33.58699 -33.19278 -31.80729 -30.96627 -29.87447 -29.40977 -28.27024 -26.01463 -24.86473 -24.27508 -23.77860 -21.88807 -21.57139 -21.18374 -20.52852 -19.33579 -18.08383 -17.69212 -17.39746 -16.74969 -16.28642 -15.52270 -15.33758 -14.82206 -14.79776 -14.55376 -14.35144 -14.14236 -13.95900 -13.57252 -13.41987 -13.17861 -12.99470 -12.68859 -12.56631 -12.35089 -11.91602 -11.88773 -11.71653 -11.57532 -11.47657 -11.39281 -11.26580 -10.97896 -10.94603 -10.75557 -10.67159 -10.47281 -10.35889 -10.21076 -9.87311 -9.79608 -9.69751 -9.54836 -9.46418 -8.76631 -8.49177 -8.41040 -6.68849 -5.80767 -3.23571 0.42765 0.68234 2.73251 3.15652 3.39117 3.46304 3.48477 3.52401 3.72166 3.93367 4.14120 4.27259 4.44045 4.51114 4.53079 4.65800 4.73844 4.90666 4.98658 5.04561 5.22302 5.32353 5.35161 5.41108 5.42283 5.50093 5.56937 5.62537 5.68968 5.85295 5.89268 5.94044 6.12138 6.16885 6.26052 6.32891 6.46679 6.52733 6.58445 6.60257 6.73179 6.74883 6.80823 6.98999 7.03667 7.30924 7.54873 7.64687 7.86010 8.02948 8.46465 8.51825 8.60304 9.22470 9.84628 10.38224 11.26536 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.003150 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.731997 B = 8887.022184 C =10518.190010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.253 4.253 5 H 0.067 0.933 6 C 0.008 3.992 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.293 1.293 12 C 0.176 3.824 13 H 0.104 0.896 14 C -0.143 4.143 15 C 0.097 3.903 16 N -0.677 5.677 17 C 0.566 3.434 18 O -0.552 6.552 19 C 0.009 3.991 20 C -0.047 4.047 21 C -0.136 4.136 22 C 0.254 3.746 23 N -0.456 5.456 24 C 0.041 3.959 25 C -0.123 4.123 26 C -0.133 4.133 27 C 0.030 3.970 28 N -0.276 5.276 29 N -0.176 5.176 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.252 0.748 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.029 0.971 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.422 0.578 42 H 0.163 0.837 43 H 0.155 0.845 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.087 0.913 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.928 -7.858 0.673 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.304 5.304 4 C -0.383 4.383 5 H 0.085 0.915 6 C -0.191 4.191 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.220 1.220 12 C 0.069 3.931 13 H 0.122 0.878 14 C -0.202 4.202 15 C -0.028 4.028 16 N -0.326 5.326 17 C 0.348 3.652 18 O -0.430 6.430 19 C -0.140 4.140 20 C -0.077 4.077 21 C -0.167 4.167 22 C 0.016 3.984 23 N -0.175 5.175 24 C -0.084 4.084 25 C -0.161 4.161 26 C -0.171 4.171 27 C -0.097 4.097 28 N -0.124 5.124 29 N -0.022 5.022 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.261 0.739 42 H 0.181 0.819 43 H 0.172 0.828 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.105 0.895 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.158 -7.670 1.130 19.744 hybrid contribution 0.734 0.535 0.013 0.908 sum 18.892 -7.135 1.143 20.227 Atomic orbital electron populations 1.22393 0.99763 0.98318 1.02110 1.20792 0.91929 0.87600 0.98116 1.44008 1.73726 1.09738 1.02966 1.19206 1.42524 0.89270 0.87274 0.91508 1.24998 0.98920 0.97797 0.97402 1.70020 1.43155 1.08389 1.32303 0.86336 0.78366 0.80248 0.82571 1.20059 1.21634 1.21977 1.20533 0.90866 0.96705 0.85022 0.87802 1.22118 1.00533 0.99560 0.97978 1.22268 0.86986 1.00844 0.92663 1.45897 1.16342 1.50768 1.19603 1.17489 0.82085 0.79887 0.85728 1.90752 1.80908 1.51770 1.19575 1.22915 0.97036 0.99698 0.94344 1.22308 0.90706 0.93473 1.01188 1.21877 1.00978 1.01098 0.92709 1.21697 0.93896 0.91586 0.91203 1.61699 1.01904 1.50552 1.03306 1.23387 0.88433 0.98275 0.98343 1.22513 0.97414 1.02418 0.93739 1.22464 0.93876 1.01443 0.99313 1.23013 0.98010 0.99345 0.89341 1.73373 0.99162 1.13387 1.26503 1.73212 1.16588 1.12453 0.99918 0.92871 0.93144 0.95399 0.94521 0.94549 0.93766 0.95147 0.90001 0.95157 0.92438 0.92315 0.73885 0.81930 0.82751 0.88899 0.92336 0.90244 0.90215 0.90860 0.90472 0.89505 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 10.02 37.16 0.37 -2.90 16 2 C 0.14 2.94 5.73 -4.04 -0.02 2.92 16 3 N -0.58 -13.40 1.84 -165.67 -0.30 -13.70 16 4 C -0.25 -6.50 9.50 -15.06 -0.14 -6.64 16 5 H 0.07 1.75 7.90 -52.49 -0.41 1.34 16 6 C 0.01 0.21 4.84 -17.43 -0.08 0.12 16 7 N -0.89 -24.05 10.24 55.49 0.57 -23.48 16 8 Si 0.89 21.21 29.59 -169.99 -5.03 16.18 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 C 0.18 3.84 1.93 -67.93 -0.13 3.71 16 13 H 0.10 2.58 5.93 -51.93 -0.31 2.28 16 14 C -0.14 -2.95 8.25 37.16 0.31 -2.65 16 15 C 0.10 1.90 4.85 -4.04 -0.02 1.88 16 16 N -0.68 -13.11 5.38 -61.24 -0.33 -13.44 16 17 C 0.57 10.41 7.80 -12.33 -0.10 10.31 16 18 O -0.55 -10.91 16.38 5.32 0.09 -10.82 16 19 C 0.01 0.15 6.83 -82.84 -0.57 -0.42 16 20 C -0.05 -0.60 9.71 -38.88 -0.38 -0.97 16 21 C -0.14 -1.45 9.57 -39.06 -0.37 -1.82 16 22 C 0.25 3.19 6.27 -154.94 -0.97 2.22 16 23 N -0.46 -4.68 5.29 -169.11 -0.89 -5.58 16 24 C 0.04 0.30 6.06 -1.90 -0.01 0.29 16 25 C -0.12 -0.73 7.06 -24.87 -0.18 -0.90 16 26 C -0.13 -0.95 6.93 -25.36 -0.18 -1.12 16 27 C 0.03 0.30 6.36 -2.74 -0.02 0.28 16 28 N -0.28 -4.34 9.32 31.21 0.29 -4.05 16 29 N -0.18 -3.06 10.73 33.32 0.36 -2.70 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.01 6.03 -51.93 -0.31 0.69 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 34 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.03 0.58 6.50 -51.93 -0.34 0.25 16 37 H 0.08 1.93 7.22 -51.93 -0.37 1.56 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 1.12 6.76 -51.93 -0.35 0.77 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.42 8.75 7.43 -40.82 -0.30 8.45 16 42 H 0.16 1.75 7.71 -52.49 -0.40 1.35 16 43 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.47 7.99 -51.93 -0.42 0.06 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 1.06 6.50 -51.93 -0.34 0.72 16 51 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -29.33 404.01 -9.75 -39.08 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.09 Total: 8.12 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -2.49 Total: 4.30 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.31 Total: -62.96 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.33 -9.75 -39.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156341802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.356 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds