Wall clock time and date at job start Wed Apr 1 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21554 * 120.00276 * 0.02562 * 17 16 15 19 19 C 1.47860 * 120.00018 * 180.02562 * 17 16 15 20 20 C 1.40070 * 120.09518 * 179.97438 * 19 17 16 21 21 C 1.38288 * 117.98951 * 179.97438 * 20 19 17 22 22 C 1.39593 * 118.03294 * 359.97438 * 21 20 19 23 23 N 1.38504 * 120.05329 * 179.97438 * 22 21 20 24 24 C 1.48538 * 111.00008 * 62.60076 * 23 22 21 25 25 C 1.54936 * 103.22702 * 159.72495 * 24 23 22 26 26 C 1.54595 * 102.91917 * 322.58754 * 25 24 23 27 27 C 1.47898 * 111.00543 * 180.02562 * 23 22 21 28 28 N 1.32862 * 119.90394 * 359.97438 * 22 21 20 29 29 N 1.28354 * 122.15993 * 359.73543 * 28 22 21 30 30 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 32 32 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 34 34 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 35 35 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 37 37 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 38 38 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 39 39 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 40 40 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 41 41 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 42 42 H 1.07998 * 121.00721 * 359.97438 * 20 19 17 43 43 H 1.08002 * 120.98213 * 179.97438 * 21 20 19 44 44 H 1.08999 * 110.66541 * 278.15875 * 24 23 22 45 45 H 1.09001 * 110.66209 * 41.29218 * 24 23 22 46 46 H 1.09000 * 110.72241 * 204.23311 * 25 24 23 47 47 H 1.09001 * 110.72352 * 80.94333 * 25 24 23 48 48 H 1.09004 * 110.31276 * 263.03876 * 26 25 24 49 49 H 1.09004 * 110.30689 * 140.87829 * 26 25 24 50 50 H 1.09001 * 109.91445 * 333.50475 * 27 23 22 51 51 H 1.08992 * 109.91891 * 94.79936 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6594 -0.2030 -2.6238 19 6 6.7952 0.0478 -0.5970 20 6 7.9005 -0.6952 -1.0308 21 6 8.9515 -0.8700 -0.1493 22 6 8.8471 -0.2950 1.1184 23 7 9.8750 -0.4443 2.0346 24 6 11.1261 0.1838 1.5381 25 6 11.9555 0.3915 2.8301 26 6 10.8818 0.7845 3.8707 27 6 9.5559 0.2412 3.3057 28 7 7.7601 0.3958 1.4449 29 7 6.7859 0.5638 0.6263 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.3122 5.0279 0.2067 36 1 0.7445 1.1534 -2.3541 37 1 0.3853 2.7441 -1.6406 38 1 1.4122 2.6307 -3.0896 39 1 3.0183 0.2298 -2.2607 40 1 3.7790 1.7183 -2.8724 41 1 4.5728 1.3525 -0.1869 42 1 7.9309 -1.1189 -2.0238 43 1 9.8273 -1.4347 -0.4333 44 1 11.6453 -0.4840 0.8508 45 1 10.9129 1.1399 1.0599 46 1 12.6785 1.1966 2.6991 47 1 12.4544 -0.5329 3.1210 48 1 10.8335 1.8686 3.9737 49 1 11.1004 0.3217 4.8331 50 1 8.8663 1.0647 3.1204 51 1 9.1144 -0.4656 4.0081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156341802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:15 Heat of formation + Delta-G solvation = 42.401295 kcal Electronic energy + Delta-G solvation = -31287.642484 eV Core-core repulsion = 27222.927113 eV Total energy + Delta-G solvation = -4064.715371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.51301 -40.75441 -39.64046 -38.60187 -35.49827 -34.62459 -34.23489 -33.72650 -32.51770 -30.89923 -30.09949 -30.07610 -27.42913 -26.04157 -25.76948 -25.17889 -23.29259 -22.64976 -22.03918 -21.64344 -21.07869 -19.40274 -18.74963 -18.61531 -18.27640 -17.08750 -16.84254 -16.75823 -16.52945 -16.20811 -15.74547 -15.61472 -15.37060 -15.21181 -14.92575 -14.50204 -14.33572 -14.19726 -14.01289 -13.72301 -13.65075 -13.30457 -13.25721 -13.08105 -13.00543 -12.89791 -12.83099 -12.63901 -12.29089 -12.20930 -12.14376 -12.09062 -11.74418 -11.61484 -11.50416 -11.36939 -11.29224 -11.26051 -11.16380 -10.83128 -10.44546 -10.03653 -9.62478 -8.59339 -7.81743 -5.24397 -0.65037 -0.30045 1.45579 1.51329 1.51453 1.59556 2.05365 2.29838 2.54437 2.55301 2.91209 3.28437 3.33560 3.51811 3.61928 3.66098 3.72029 3.86670 3.89175 4.08416 4.21567 4.25710 4.37583 4.44832 4.47508 4.52039 4.65918 4.67564 4.73162 4.83217 4.84424 4.86570 4.90194 4.90877 4.94902 5.03882 5.05195 5.09534 5.12132 5.17729 5.21439 5.33223 5.43094 5.54007 5.60571 5.72928 5.75214 5.77161 5.93750 6.47472 6.53163 7.05128 7.25383 7.45535 7.94353 8.42508 9.23037 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.003150 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.731997 B = 8887.022184 C =10518.190010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.253 4.253 5 H 0.056 0.944 6 C -0.030 4.030 7 N -0.912 5.912 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.296 1.296 12 C 0.181 3.819 13 H 0.072 0.928 14 C -0.131 4.131 15 C 0.109 3.891 16 N -0.685 5.685 17 C 0.569 3.431 18 O -0.567 6.567 19 C -0.011 4.011 20 C -0.045 4.045 21 C -0.114 4.114 22 C 0.253 3.747 23 N -0.454 5.454 24 C 0.036 3.964 25 C -0.115 4.115 26 C -0.129 4.129 27 C 0.025 3.975 28 N -0.307 5.307 29 N -0.210 5.210 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.247 0.753 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.415 0.585 42 H 0.183 0.817 43 H 0.200 0.800 44 H 0.120 0.880 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.060 0.940 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.643 -9.634 0.216 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.384 4.384 5 H 0.074 0.926 6 C -0.227 4.227 7 N -0.557 5.557 8 Si 0.774 3.226 9 H -0.200 1.200 10 H -0.221 1.221 11 H -0.224 1.224 12 C 0.074 3.926 13 H 0.090 0.910 14 C -0.190 4.190 15 C -0.016 4.016 16 N -0.333 5.333 17 C 0.353 3.647 18 O -0.447 6.447 19 C -0.161 4.161 20 C -0.073 4.073 21 C -0.145 4.145 22 C 0.015 3.985 23 N -0.172 5.172 24 C -0.088 4.088 25 C -0.153 4.153 26 C -0.168 4.168 27 C -0.102 4.102 28 N -0.155 5.155 29 N -0.056 5.056 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.252 0.748 42 H 0.201 0.799 43 H 0.217 0.783 44 H 0.138 0.862 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.108 0.892 50 H 0.078 0.922 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.889 -9.461 0.678 22.942 hybrid contribution 0.004 0.999 0.218 1.023 sum 20.893 -8.461 0.896 22.560 Atomic orbital electron populations 1.22250 0.98708 0.99891 1.00634 1.20857 0.92671 0.86303 0.98591 1.44079 1.74143 1.10379 1.02637 1.19265 1.41608 0.89556 0.87924 0.92606 1.25445 0.99660 0.98478 0.99130 1.70131 1.44186 1.08005 1.33361 0.85565 0.77433 0.78944 0.80621 1.20049 1.22110 1.22350 1.20399 0.91812 0.95473 0.84966 0.91035 1.21945 0.99118 0.99911 0.98067 1.22047 0.86564 1.00497 0.92489 1.45919 1.16860 1.51408 1.19158 1.17751 0.82210 0.78928 0.85809 1.90726 1.81352 1.52328 1.20253 1.22728 0.97545 1.01696 0.94134 1.22523 0.89842 0.92647 1.02304 1.22301 1.01482 0.99653 0.91028 1.22096 0.93511 0.90545 0.92363 1.61809 1.02185 1.50274 1.02957 1.23611 0.87190 0.98379 0.99629 1.22545 0.96960 1.03658 0.92134 1.22461 0.92637 1.01423 1.00240 1.23018 0.99304 0.98370 0.89541 1.73305 1.00219 1.15199 1.26814 1.73114 1.17981 1.13803 1.00704 0.95256 0.93603 0.92257 0.93080 0.94966 0.94324 0.93731 0.93101 0.93396 0.92013 0.91601 0.74799 0.79942 0.78274 0.86215 0.93132 0.88489 0.88983 0.90883 0.89239 0.92166 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.99 10.02 71.98 0.72 -5.27 16 2 C 0.14 5.80 5.73 86.38 0.49 6.30 16 3 N -0.59 -27.55 1.84 -678.05 -1.25 -28.80 16 4 C -0.25 -13.31 9.50 84.03 0.80 -12.51 16 5 H 0.06 3.02 7.90 -2.91 -0.02 2.99 16 6 C -0.03 -1.61 4.84 84.86 0.41 -1.20 16 7 N -0.91 -50.33 10.24 21.65 0.22 -50.11 16 8 Si 0.94 44.89 29.59 68.60 2.03 46.92 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 10 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 12 C 0.18 7.98 1.93 44.99 0.09 8.07 16 13 H 0.07 3.67 5.93 -2.39 -0.01 3.66 16 14 C -0.13 -5.41 8.25 71.98 0.59 -4.82 16 15 C 0.11 4.25 4.85 86.38 0.42 4.67 16 16 N -0.68 -26.97 5.38 -465.96 -2.51 -29.47 16 17 C 0.57 20.96 7.80 86.79 0.68 21.63 16 18 O -0.57 -22.01 16.38 -3.89 -0.06 -22.07 16 19 C -0.01 -0.36 6.83 42.00 0.29 -0.08 16 20 C -0.04 -1.03 9.71 22.73 0.22 -0.81 16 21 C -0.11 -2.10 9.57 22.61 0.22 -1.89 16 22 C 0.25 6.02 6.27 133.21 0.84 6.86 16 23 N -0.45 -8.44 5.29 -688.93 -3.64 -12.08 16 24 C 0.04 0.43 6.06 86.65 0.53 0.95 16 25 C -0.12 -0.99 7.06 31.80 0.22 -0.76 16 26 C -0.13 -1.62 6.93 31.48 0.22 -1.40 16 27 C 0.02 0.49 6.36 86.46 0.55 1.04 16 28 N -0.31 -9.82 9.32 -55.17 -0.51 -10.33 16 29 N -0.21 -7.52 10.73 -48.50 -0.52 -8.04 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.79 6.03 -2.39 -0.01 1.78 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.95 6.35 -2.39 -0.02 1.93 16 34 H 0.03 1.34 8.09 -2.39 -0.02 1.32 16 35 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 36 H 0.04 1.68 6.50 -2.39 -0.02 1.66 16 37 H 0.05 2.42 7.22 -2.39 -0.02 2.41 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 2.35 6.76 -2.38 -0.02 2.33 16 40 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.41 17.81 7.43 -92.71 -0.69 17.13 16 42 H 0.18 3.44 7.71 -2.91 -0.02 3.42 16 43 H 0.20 1.81 8.06 -2.91 -0.02 1.78 16 44 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.05 0.70 7.99 -2.39 -0.02 0.68 16 46 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.06 1.53 6.50 -2.39 -0.02 1.51 16 51 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -65.70 404.01 1.29 -64.41 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.25 Total: 28.82 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 7.28 Total: 20.75 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -8.21 Total: -138.84 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.06 Total: -22.07 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.70 1.29 -64.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156341802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.815 kcal (2) G-P(sol) polarization free energy of solvation -65.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds