Wall clock time and date at job start Wed Apr 1 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40447 * 126.82672 * 2 1 4 4 C 1.30708 * 106.79610 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.52673 * 179.97438 * 4 3 2 6 6 C 1.53004 * 117.49705 * 8.77488 * 5 4 3 7 7 C 1.52998 * 117.49759 * 300.11410 * 5 4 3 8 8 N 1.33239 * 108.94809 * 0.24460 * 4 3 2 9 9 C 1.30837 * 109.82675 * 359.58840 * 8 4 3 10 10 C 1.50694 * 125.95902 * 180.19521 * 9 8 4 11 11 C 1.50701 * 109.47244 * 270.24299 * 10 9 8 12 12 O 1.21281 * 119.99970 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00069 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00171 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47252 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46812 * 175.45165 * 15 14 13 17 17 C 1.52996 * 115.55098 * 279.32261 * 16 15 14 18 18 N 1.46495 * 109.47487 * 294.95303 * 17 16 15 19 19 C 1.36939 * 120.00184 * 174.36888 * 18 17 16 20 20 H 1.07999 * 120.00095 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00057 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99959 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00169 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47031 * 90.00362 * 23 21 19 25 25 H 1.48491 * 109.47304 * 210.00448 * 23 21 19 26 26 H 1.48504 * 109.46954 * 330.00680 * 23 21 19 27 27 C 1.53007 * 117.49324 * 133.62010 * 16 15 14 28 28 C 1.53002 * 117.49774 * 64.99946 * 16 15 14 29 29 H 1.09003 * 109.47132 * 89.97712 * 1 2 3 30 30 H 1.09003 * 109.47153 * 209.97354 * 1 2 3 31 31 H 1.08998 * 109.47238 * 329.97664 * 1 2 3 32 32 H 1.08993 * 115.54821 * 154.44410 * 5 4 3 33 33 H 1.09004 * 117.49699 * 359.97438 * 6 5 4 34 34 H 1.08996 * 117.49653 * 145.01855 * 6 5 4 35 35 H 1.08999 * 117.49817 * 214.97589 * 7 5 4 36 36 H 1.08999 * 117.50071 * 359.97438 * 7 5 4 37 37 H 1.09002 * 109.47467 * 30.24748 * 10 9 8 38 38 H 1.08998 * 109.47034 * 150.24491 * 10 9 8 39 39 H 0.97003 * 119.99840 * 0.02562 * 13 11 10 40 40 H 1.09005 * 109.46968 * 299.99661 * 14 13 11 41 41 H 1.08998 * 109.47302 * 59.99665 * 14 13 11 42 42 H 1.08993 * 109.47261 * 295.45291 * 15 14 13 43 43 H 1.09002 * 109.46833 * 55.45403 * 15 14 13 44 44 H 1.09003 * 109.47290 * 54.95759 * 17 16 15 45 45 H 1.09006 * 109.46626 * 174.95299 * 17 16 15 46 46 H 0.97005 * 120.00446 * 354.37388 * 18 17 16 47 47 H 0.97001 * 120.00318 * 179.97438 * 22 21 19 48 48 H 1.08999 * 117.50011 * 359.97438 * 27 16 15 49 49 H 1.09003 * 117.49410 * 145.02139 * 27 16 15 50 50 H 1.09001 * 117.49472 * 214.97385 * 28 16 15 51 51 H 1.09002 * 117.49892 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5348 0.6765 -0.0006 5 6 4.7776 1.5289 -0.0013 6 6 4.6017 3.0346 0.2056 7 6 4.9745 2.4898 -1.1755 8 7 3.5096 -0.6556 -0.0063 9 6 2.2707 -1.0761 -0.0006 10 6 1.8247 -2.5156 -0.0001 11 6 1.6747 -2.9955 -1.4207 12 8 1.9075 -2.2429 -2.3429 13 7 1.2819 -4.2611 -1.6665 14 6 1.1366 -4.7278 -3.0476 15 6 0.6825 -6.1889 -3.0470 16 6 0.4215 -6.6423 -4.4848 17 6 -0.9307 -6.2318 -5.0711 18 7 -2.0060 -6.8967 -4.3311 19 6 -3.3134 -6.5923 -4.6019 20 1 -3.5518 -5.8624 -5.3613 21 6 -4.3324 -7.2227 -3.9010 22 7 -4.0419 -8.1126 -2.9758 23 14 -6.1158 -6.8081 -4.2708 24 1 -6.6242 -7.7126 -5.3332 25 1 -6.9298 -6.9822 -3.0412 26 1 -6.2111 -5.3998 -4.7324 27 6 0.9981 -7.9927 -4.9153 28 6 1.6179 -6.6948 -5.4371 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 5.6673 1.0632 0.4225 33 1 3.5870 3.4087 0.3418 34 1 5.3759 3.5595 0.7652 35 1 5.9938 2.6566 -1.5239 36 1 4.2053 2.5051 -1.9477 37 1 2.5677 -3.1260 0.5131 38 1 0.8675 -2.5992 0.5146 39 1 1.0953 -4.8629 -0.9290 40 1 0.3940 -4.1172 -3.5613 41 1 2.0940 -4.6447 -3.5618 42 1 1.4607 -6.8111 -2.6054 43 1 -0.2336 -6.2844 -2.4640 44 1 -1.0486 -5.1511 -4.9908 45 1 -0.9760 -6.5253 -6.1200 46 1 -1.7920 -7.5525 -3.6491 47 1 -4.7539 -8.5529 -2.4857 48 1 1.5635 -8.5577 -4.1743 49 1 0.4138 -8.5888 -5.6163 50 1 1.4415 -6.4372 -6.4815 51 1 2.5908 -6.4059 -5.0395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168256913.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:39 Heat of formation + Delta-G solvation = 85.147292 kcal Electronic energy + Delta-G solvation = -29654.646754 eV Core-core repulsion = 25591.784988 eV Total energy + Delta-G solvation = -4062.861765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.27727 -40.79786 -39.52075 -38.18776 -36.13668 -35.72417 -34.93255 -33.78157 -32.76978 -31.44717 -29.70003 -28.24671 -27.75130 -24.85160 -24.70303 -24.55379 -23.33393 -23.06093 -22.29029 -21.35567 -20.87812 -19.94656 -19.02889 -18.28340 -18.10994 -17.21958 -16.87578 -16.76893 -16.61957 -16.39347 -16.19000 -15.80906 -15.55788 -15.19610 -15.05027 -14.71008 -14.65217 -14.39627 -14.20778 -14.14685 -13.82990 -13.23998 -13.15924 -13.13021 -12.99252 -12.79978 -12.72346 -12.53661 -12.43493 -12.27387 -12.13931 -11.92419 -11.90635 -11.83013 -11.49491 -11.21690 -11.08606 -11.07343 -10.89553 -10.76567 -10.55919 -10.21724 -10.13474 -8.96297 -7.93862 -5.21112 0.43241 1.28318 1.47096 1.48088 1.51992 1.56288 1.60037 2.19332 2.54622 2.76678 2.90821 2.98299 3.33340 3.38857 3.47734 3.74070 3.85380 3.87319 3.88689 3.98237 3.99771 4.03972 4.11323 4.19067 4.23823 4.27444 4.39146 4.43039 4.50066 4.55071 4.60029 4.67074 4.72474 4.84507 4.88249 4.94258 4.98309 5.08848 5.09331 5.19001 5.21297 5.25216 5.29167 5.34471 5.35445 5.39969 5.41797 5.50065 5.74789 6.28588 6.48582 7.01856 7.16868 7.36098 8.11796 8.38596 9.29011 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.002036 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.725407 B =13752.119831 C =15167.293777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.376 5.376 3 N -0.342 5.342 4 C 0.239 3.761 5 C -0.091 4.091 6 C -0.144 4.144 7 C -0.157 4.157 8 N -0.559 5.559 9 C 0.293 3.707 10 C -0.060 4.060 11 C 0.518 3.482 12 O -0.584 6.584 13 N -0.709 5.709 14 C 0.135 3.865 15 C -0.076 4.076 16 C -0.138 4.138 17 C 0.188 3.812 18 N -0.733 5.733 19 C -0.245 4.245 20 H 0.068 0.932 21 C -0.069 4.069 22 N -0.963 5.963 23 Si 0.968 3.032 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.274 1.274 27 C -0.163 4.163 28 C -0.154 4.154 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.420 0.580 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.009 0.991 46 H 0.378 0.622 47 H 0.251 0.749 48 H 0.110 0.890 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.853 13.741 10.292 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.166 5.166 3 N -0.171 5.171 4 C -0.042 4.042 5 C -0.112 4.112 6 C -0.182 4.182 7 C -0.196 4.196 8 N -0.287 5.287 9 C 0.016 3.984 10 C -0.101 4.101 11 C 0.303 3.697 12 O -0.464 6.464 13 N -0.362 5.362 14 C 0.011 3.989 15 C -0.114 4.114 16 C -0.139 4.139 17 C 0.061 3.939 18 N -0.376 5.376 19 C -0.377 4.377 20 H 0.086 0.914 21 C -0.262 4.262 22 N -0.613 5.613 23 Si 0.797 3.203 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.199 1.199 27 C -0.200 4.200 28 C -0.192 4.192 29 H 0.093 0.907 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.160 0.840 33 H 0.107 0.893 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.179 0.821 38 H 0.177 0.823 39 H 0.258 0.742 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.027 0.973 46 H 0.210 0.790 47 H 0.060 0.940 48 H 0.128 0.872 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 17.821 14.906 9.546 25.118 hybrid contribution -1.738 -0.661 -0.081 1.862 sum 16.083 14.244 9.465 23.477 Atomic orbital electron populations 1.22332 0.71681 1.07132 1.04521 1.50330 1.09029 1.03350 1.53890 1.77830 1.01790 1.08860 1.28603 1.23662 0.93354 0.89527 0.97681 1.20287 0.92803 0.90617 1.07453 1.23094 1.03890 0.92156 0.99011 1.23088 1.03967 1.01080 0.91423 1.70188 1.20779 1.11456 1.26253 1.23869 0.85947 0.92744 0.95828 1.20378 1.08088 0.86514 0.95143 1.20570 0.76129 0.81934 0.91040 1.90764 1.51636 1.56106 1.47856 1.45808 1.68142 1.12514 1.09700 1.21147 1.00553 0.94710 0.82467 1.21105 1.01942 0.94114 0.94239 1.21431 0.93892 1.02723 0.95902 1.20221 0.85905 0.94532 0.93208 1.42406 1.01167 1.49097 1.44949 1.19566 0.84572 1.18019 1.15559 0.91419 1.25447 1.01566 0.99845 0.99367 1.69788 1.32181 1.31458 1.27895 0.85230 0.80622 0.77803 0.76632 1.21691 1.21856 1.19914 1.23013 1.03012 0.90347 1.03664 1.23050 0.96504 1.00717 0.98893 0.90714 0.85635 0.87571 0.83975 0.89252 0.85020 0.85306 0.90664 0.82148 0.82311 0.74248 0.93940 0.91477 0.89000 0.91694 0.96470 0.97284 0.78955 0.93969 0.87185 0.90283 0.88886 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 11.33 127.77 1.45 2.73 16 2 N -0.38 -9.11 4.04 -359.88 -1.45 -10.56 16 3 N -0.34 -9.65 12.24 -51.33 -0.63 -10.28 16 4 C 0.24 6.63 7.69 138.63 1.07 7.70 16 5 C -0.09 -1.84 6.33 -11.54 -0.07 -1.91 16 6 C -0.14 -2.19 10.14 30.62 0.31 -1.88 16 7 C -0.16 -2.68 10.24 30.62 0.31 -2.37 16 8 N -0.56 -16.11 11.19 -179.73 -2.01 -18.12 16 9 C 0.29 7.11 6.48 138.22 0.90 8.00 16 10 C -0.06 -0.90 6.02 29.10 0.18 -0.73 16 11 C 0.52 11.97 7.82 87.66 0.69 12.65 16 12 O -0.58 -20.03 16.03 -3.03 -0.05 -20.08 16 13 N -0.71 -14.00 5.56 -463.05 -2.57 -16.57 16 14 C 0.14 3.41 5.51 86.38 0.48 3.88 16 15 C -0.08 -1.94 5.24 30.60 0.16 -1.78 16 16 C -0.14 -4.11 1.52 -52.18 -0.08 -4.19 16 17 C 0.19 7.47 6.10 86.38 0.53 7.99 16 18 N -0.73 -36.08 5.30 -343.45 -1.82 -37.89 16 19 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16 20 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 22 N -0.96 -56.76 13.06 21.65 0.28 -56.47 16 23 Si 0.97 45.38 29.55 68.60 2.03 47.40 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 C -0.16 -4.36 9.90 30.60 0.30 -4.06 16 28 C -0.15 -3.69 9.57 30.60 0.29 -3.40 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.13 1.02 7.11 -2.39 -0.02 1.00 16 31 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.09 1.62 7.88 -2.38 -0.02 1.60 16 34 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.16 1.05 7.13 -2.39 -0.02 1.03 16 39 H 0.42 5.41 8.47 -92.71 -0.79 4.62 16 40 H 0.04 1.34 7.69 -2.38 -0.02 1.32 16 41 H 0.07 1.69 7.80 -2.39 -0.02 1.68 16 42 H 0.09 1.83 7.94 -2.39 -0.02 1.81 16 43 H 0.06 1.98 7.64 -2.39 -0.02 1.96 16 44 H 0.02 0.72 7.69 -2.39 -0.02 0.70 16 45 H 0.01 0.38 8.09 -2.38 -0.02 0.36 16 46 H 0.38 19.43 7.46 -92.70 -0.69 18.74 16 47 H 0.25 14.38 8.31 -92.71 -0.77 13.60 16 48 H 0.11 2.48 8.08 -2.39 -0.02 2.46 16 49 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.11 2.23 7.98 -2.39 -0.02 2.21 16 Total: -1.00 -82.31 428.01 1.06 -81.26 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.53 Total: 34.78 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 7.81 Total: 6.54 kcal Atomic # 7 Polarization: -141.69 SS G_CDS: -8.20 Total: -149.89 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -82.31 1.06 -81.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168256913.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.405 kcal (2) G-P(sol) polarization free energy of solvation -82.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds