Wall clock time and date at job start Wed Apr 1 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46847 * 111.00273 * 2 1 4 4 C 1.53035 * 109.52289 * 185.84520 * 3 2 1 5 5 C 1.53119 * 109.27649 * 300.81605 * 4 3 2 6 6 N 1.46501 * 109.52440 * 177.56134 * 5 4 3 7 7 C 1.34777 * 120.00282 * 155.00192 * 6 5 4 8 8 O 1.21554 * 119.99766 * 0.02562 * 7 6 5 9 9 C 1.47851 * 120.00236 * 180.02562 * 7 6 5 10 10 C 1.40066 * 120.09638 * 179.97438 * 9 7 6 11 11 C 1.38295 * 117.99174 * 179.97438 * 10 9 7 12 12 C 1.39598 * 118.02846 * 359.97438 * 11 10 9 13 13 N 1.38507 * 120.04695 * 179.97438 * 12 11 10 14 14 C 1.46508 * 119.99792 * 0.02562 * 13 12 11 15 15 C 1.52995 * 109.46660 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.46709 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47142 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99641 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00360 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99722 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00290 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46836 * 90.00139 * 21 19 17 23 23 H 1.48498 * 109.47472 * 209.99899 * 21 19 17 24 24 H 1.48504 * 109.47485 * 330.00221 * 21 19 17 25 25 N 1.32853 * 119.90543 * 0.02562 * 12 11 10 26 26 N 1.28361 * 122.16204 * 0.02562 * 25 12 11 27 27 C 1.53120 * 109.15891 * 57.65962 * 5 4 3 28 28 C 1.46848 * 111.00015 * 124.21369 * 2 1 3 29 29 H 1.08995 * 109.47365 * 59.99817 * 1 2 3 30 30 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46302 * 300.00148 * 1 2 3 32 32 H 1.08989 * 109.46139 * 65.82417 * 3 2 1 33 33 H 1.09003 * 109.45074 * 305.85447 * 3 2 1 34 34 H 1.09005 * 109.50201 * 180.88224 * 4 3 2 35 35 H 1.08999 * 109.50458 * 60.76039 * 4 3 2 36 36 H 1.09001 * 109.52695 * 297.68795 * 5 4 3 37 37 H 0.97000 * 119.99556 * 335.00296 * 6 5 4 38 38 H 1.07992 * 121.00359 * 0.25114 * 10 9 7 39 39 H 1.07996 * 120.98185 * 180.02562 * 11 10 9 40 40 H 0.96995 * 120.00344 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.46710 * 300.00098 * 14 13 12 42 42 H 1.09000 * 109.46724 * 60.00129 * 14 13 12 43 43 H 1.08998 * 109.47128 * 299.99634 * 15 14 13 44 44 H 1.09000 * 109.47454 * 60.00567 * 15 14 13 45 45 H 1.08998 * 109.46850 * 299.99588 * 16 15 14 46 46 H 1.08995 * 109.47741 * 59.99859 * 16 15 14 47 47 H 0.97000 * 119.99884 * 179.97438 * 20 19 17 48 48 H 1.08996 * 109.50373 * 62.28837 * 27 5 4 49 49 H 1.09001 * 109.50272 * 182.40445 * 27 5 4 50 50 H 1.09002 * 109.45842 * 294.16913 * 28 2 1 51 51 H 1.08995 * 109.46323 * 54.14233 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 -0.1469 5 6 4.1189 0.5369 1.0142 6 7 5.5717 0.4487 0.8477 7 6 6.3633 0.2632 1.9227 8 8 5.8716 0.1687 3.0303 9 6 7.8295 0.1748 1.7547 10 6 8.6540 -0.0174 2.8705 11 6 10.0192 -0.0943 2.6633 12 6 10.4918 0.0237 1.3551 13 7 11.8514 -0.0467 1.0999 14 6 12.7945 -0.2456 2.2033 15 6 14.2216 -0.2858 1.6532 16 6 15.2064 -0.4942 2.8054 17 6 16.6122 -0.5331 2.2639 18 1 16.7858 -0.4208 1.2038 19 6 17.6768 -0.7119 3.1215 20 7 17.4654 -0.8491 4.4123 21 14 19.4192 -0.7609 2.4501 22 1 19.9826 0.6131 2.4352 23 1 20.2581 -1.6305 3.3133 24 1 19.4022 -1.3039 1.0680 25 7 9.6358 0.2046 0.3554 26 7 8.3684 0.2772 0.5457 27 6 3.5182 -0.8716 1.0207 28 6 1.9953 -0.7709 1.1337 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.7326 1.8607 0.9375 33 1 1.5634 1.9255 -0.8331 34 1 3.9100 2.3512 -0.1311 35 1 3.7813 0.8567 -1.0908 36 1 3.8899 1.0359 1.9558 37 1 5.9640 0.5238 -0.0363 38 1 8.2360 -0.1074 3.8622 39 1 10.6994 -0.2422 3.4891 40 1 12.1791 0.0357 0.1907 41 1 12.7019 0.5765 2.9130 42 1 12.5719 -1.1867 2.7062 43 1 14.3143 -1.1076 0.9433 44 1 14.4439 0.6555 1.1506 45 1 15.1138 0.3274 3.5157 46 1 14.9841 -1.4355 3.3078 47 1 18.2143 -0.9753 5.0157 48 1 3.7814 -1.3837 0.0952 49 1 3.9100 -1.4304 1.8706 50 1 1.7326 -0.2709 2.0660 51 1 1.5635 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:00 Heat of formation + Delta-G solvation = 10.641770 kcal Electronic energy + Delta-G solvation = -28799.322715 eV Core-core repulsion = 24733.230148 eV Total energy + Delta-G solvation = -4066.092567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21841 -40.11185 -38.77565 -36.97826 -35.45947 -34.01104 -33.11145 -32.47075 -31.78197 -31.34353 -30.13431 -27.23932 -26.52764 -25.13178 -24.13735 -23.67303 -23.19289 -22.52329 -21.00616 -20.57926 -20.41413 -18.47440 -17.79620 -17.30003 -16.60994 -16.39975 -15.92118 -15.73598 -15.56528 -15.20311 -15.07378 -14.73230 -14.69498 -14.44101 -14.39913 -14.03364 -13.79355 -13.75725 -13.35427 -12.90622 -12.84080 -12.41251 -12.40519 -12.16363 -12.14454 -11.83280 -11.71584 -11.64347 -11.25582 -11.08753 -10.96632 -10.90910 -10.76295 -10.65822 -10.35995 -10.23233 -9.95522 -9.78942 -9.60949 -9.34641 -9.25606 -8.82509 -8.46941 -8.12501 -6.11933 -4.15223 0.60761 0.77389 2.59337 2.76571 2.95415 3.25258 3.32230 3.35031 3.44274 3.65448 4.00407 4.26066 4.36607 4.39916 4.46800 4.56966 4.58093 4.64813 4.70053 4.84355 4.92619 4.97884 5.02398 5.06291 5.17700 5.22361 5.24599 5.30154 5.36416 5.40753 5.43799 5.49368 5.56416 5.59481 5.68217 5.75329 5.81967 5.88089 5.88941 6.20319 6.36127 6.39679 6.55079 6.58284 6.79479 6.88928 7.23714 7.43435 7.49058 7.59683 7.85578 7.92403 8.26401 8.60779 8.90946 9.49997 10.99306 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.045684 B = 0.001320 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.759893 B =21199.918462 C =21520.810677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.125 4.125 5 C 0.145 3.855 6 N -0.711 5.711 7 C 0.591 3.409 8 O -0.539 6.539 9 C -0.055 4.055 10 C -0.023 4.023 11 C -0.189 4.189 12 C 0.364 3.636 13 N -0.694 5.694 14 C 0.114 3.886 15 C -0.121 4.121 16 C 0.025 3.975 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 N -0.311 5.311 26 N -0.165 5.165 27 C -0.128 4.128 28 C 0.058 3.942 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.025 0.975 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.411 0.589 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.411 0.589 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.262 0.738 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.036 0.964 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.271 2.990 -7.311 33.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.069 4.069 4 C -0.163 4.163 5 C 0.040 3.960 6 N -0.362 5.362 7 C 0.375 3.625 8 O -0.415 6.415 9 C -0.207 4.207 10 C -0.051 4.051 11 C -0.222 4.222 12 C 0.122 3.878 13 N -0.322 5.322 14 C -0.009 4.009 15 C -0.159 4.159 16 C -0.012 4.012 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 N -0.167 5.167 26 N -0.013 5.013 27 C -0.167 4.167 28 C -0.070 4.070 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.248 0.752 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.248 0.752 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.054 0.946 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -32.420 2.838 -8.172 33.554 hybrid contribution 1.391 0.190 1.282 1.901 sum -31.029 3.029 -6.891 31.929 Atomic orbital electron populations 1.22352 0.87039 1.02236 1.00714 1.61954 1.07767 1.13692 1.43603 1.22031 0.94587 0.89316 1.00992 1.21878 0.94810 1.00732 0.98907 1.21036 0.78968 0.96303 0.99696 1.45860 1.06537 1.73184 1.10577 1.17487 0.84627 0.75937 0.84415 1.90780 1.75098 1.50731 1.24877 1.22174 0.95493 1.10687 0.92320 1.22086 0.92318 0.90350 1.00387 1.21883 0.96440 1.06788 0.97117 1.20268 0.87800 0.88536 0.91236 1.44902 1.00997 1.74178 1.12129 1.21952 0.89436 1.01192 0.88352 1.21897 0.91140 1.01523 1.01379 1.19030 0.92584 0.97445 0.92190 1.21179 0.91244 1.50129 0.93787 0.92565 1.25008 0.99355 0.95093 0.94841 1.69950 1.31511 1.49434 1.02379 0.86572 0.84356 0.78027 0.78938 1.20594 1.21139 1.19829 1.73136 0.96331 1.20482 1.26787 1.72836 1.04545 1.03807 1.20104 1.22000 0.94205 0.97114 1.03365 1.22065 0.95080 0.98501 0.91374 0.91242 0.91258 0.95623 0.94531 0.90116 0.90514 0.90096 0.89535 0.75240 0.82499 0.82666 0.75217 0.91409 0.91400 0.92296 0.92297 0.96233 0.96215 0.92847 0.90580 0.90700 0.94555 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.59 60.07 0.58 0.70 16 2 N -0.55 -3.59 4.91 -242.96 -1.19 -4.78 16 3 C 0.06 0.34 5.46 -3.83 -0.02 0.32 16 4 C -0.12 -0.76 5.57 -26.65 -0.15 -0.91 16 5 C 0.14 1.16 2.52 -67.81 -0.17 0.99 16 6 N -0.71 -6.65 5.07 -54.63 -0.28 -6.92 16 7 C 0.59 7.11 7.77 -12.33 -0.10 7.02 16 8 O -0.54 -7.67 16.05 5.32 0.09 -7.58 16 9 C -0.06 -0.70 6.83 -82.85 -0.57 -1.26 16 10 C -0.02 -0.27 9.71 -38.88 -0.38 -0.65 16 11 C -0.19 -2.25 9.39 -39.05 -0.37 -2.62 16 12 C 0.36 4.88 7.74 -154.94 -1.20 3.69 16 13 N -0.69 -9.01 5.71 -60.32 -0.34 -9.36 16 14 C 0.11 1.61 4.91 -4.04 -0.02 1.59 16 15 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 16 C 0.03 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.53 -14.03 9.11 -34.44 -0.31 -14.34 16 18 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 21 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 N -0.31 -4.44 11.55 31.21 0.36 -4.08 16 26 N -0.16 -2.19 10.73 33.32 0.36 -1.84 16 27 C -0.13 -1.01 5.67 -26.65 -0.15 -1.16 16 28 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.04 0.22 8.14 -51.94 -0.42 -0.21 16 33 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.82 7.58 -51.93 -0.39 0.43 16 37 H 0.41 3.47 7.95 -40.82 -0.32 3.14 16 38 H 0.16 1.59 7.71 -52.49 -0.40 1.18 16 39 H 0.16 1.60 6.81 -52.49 -0.36 1.25 16 40 H 0.41 5.04 8.60 -40.82 -0.35 4.68 16 41 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 42 H 0.07 0.94 7.95 -51.93 -0.41 0.52 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 51 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 LS Contribution 416.19 15.07 6.27 6.27 Total: -1.00 -30.81 416.19 -10.81 -41.62 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.53 Total: 2.39 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -3.25 Total: -6.57 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.36 Total: -51.98 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.09 Total: -7.58 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.81 -10.81 -41.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.260 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds