Wall clock time and date at job start Wed Apr 1 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46847 * 111.00273 * 2 1 4 4 C 1.53035 * 109.52289 * 185.84520 * 3 2 1 5 5 C 1.53119 * 109.27649 * 300.81605 * 4 3 2 6 6 N 1.46501 * 109.52440 * 177.56134 * 5 4 3 7 7 C 1.34777 * 120.00282 * 155.00192 * 6 5 4 8 8 O 1.21554 * 119.99766 * 0.02562 * 7 6 5 9 9 C 1.47851 * 120.00236 * 180.02562 * 7 6 5 10 10 C 1.40066 * 120.09638 * 179.97438 * 9 7 6 11 11 C 1.38295 * 117.99174 * 179.97438 * 10 9 7 12 12 C 1.39598 * 118.02846 * 359.97438 * 11 10 9 13 13 N 1.38507 * 120.04695 * 179.97438 * 12 11 10 14 14 C 1.46508 * 119.99792 * 0.02562 * 13 12 11 15 15 C 1.52995 * 109.46660 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.46709 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47142 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99641 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00360 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99722 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00290 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46836 * 90.00139 * 21 19 17 23 23 H 1.48498 * 109.47472 * 209.99899 * 21 19 17 24 24 H 1.48504 * 109.47485 * 330.00221 * 21 19 17 25 25 N 1.32853 * 119.90543 * 0.02562 * 12 11 10 26 26 N 1.28361 * 122.16204 * 0.02562 * 25 12 11 27 27 C 1.53120 * 109.15891 * 57.65962 * 5 4 3 28 28 C 1.46848 * 111.00015 * 124.21369 * 2 1 3 29 29 H 1.08995 * 109.47365 * 59.99817 * 1 2 3 30 30 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46302 * 300.00148 * 1 2 3 32 32 H 1.08989 * 109.46139 * 65.82417 * 3 2 1 33 33 H 1.09003 * 109.45074 * 305.85447 * 3 2 1 34 34 H 1.09005 * 109.50201 * 180.88224 * 4 3 2 35 35 H 1.08999 * 109.50458 * 60.76039 * 4 3 2 36 36 H 1.09001 * 109.52695 * 297.68795 * 5 4 3 37 37 H 0.97000 * 119.99556 * 335.00296 * 6 5 4 38 38 H 1.07992 * 121.00359 * 0.25114 * 10 9 7 39 39 H 1.07996 * 120.98185 * 180.02562 * 11 10 9 40 40 H 0.96995 * 120.00344 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.46710 * 300.00098 * 14 13 12 42 42 H 1.09000 * 109.46724 * 60.00129 * 14 13 12 43 43 H 1.08998 * 109.47128 * 299.99634 * 15 14 13 44 44 H 1.09000 * 109.47454 * 60.00567 * 15 14 13 45 45 H 1.08998 * 109.46850 * 299.99588 * 16 15 14 46 46 H 1.08995 * 109.47741 * 59.99859 * 16 15 14 47 47 H 0.97000 * 119.99884 * 179.97438 * 20 19 17 48 48 H 1.08996 * 109.50373 * 62.28837 * 27 5 4 49 49 H 1.09001 * 109.50272 * 182.40445 * 27 5 4 50 50 H 1.09002 * 109.45842 * 294.16913 * 28 2 1 51 51 H 1.08995 * 109.46323 * 54.14233 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 -0.1469 5 6 4.1189 0.5369 1.0142 6 7 5.5717 0.4487 0.8477 7 6 6.3633 0.2632 1.9227 8 8 5.8716 0.1687 3.0303 9 6 7.8295 0.1748 1.7547 10 6 8.6540 -0.0174 2.8705 11 6 10.0192 -0.0943 2.6633 12 6 10.4918 0.0237 1.3551 13 7 11.8514 -0.0467 1.0999 14 6 12.7945 -0.2456 2.2033 15 6 14.2216 -0.2858 1.6532 16 6 15.2064 -0.4942 2.8054 17 6 16.6122 -0.5331 2.2639 18 1 16.7858 -0.4208 1.2038 19 6 17.6768 -0.7119 3.1215 20 7 17.4654 -0.8491 4.4123 21 14 19.4192 -0.7609 2.4501 22 1 19.9826 0.6131 2.4352 23 1 20.2581 -1.6305 3.3133 24 1 19.4022 -1.3039 1.0680 25 7 9.6358 0.2046 0.3554 26 7 8.3684 0.2772 0.5457 27 6 3.5182 -0.8716 1.0207 28 6 1.9953 -0.7709 1.1337 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.7326 1.8607 0.9375 33 1 1.5634 1.9255 -0.8331 34 1 3.9100 2.3512 -0.1311 35 1 3.7813 0.8567 -1.0908 36 1 3.8899 1.0359 1.9558 37 1 5.9640 0.5238 -0.0363 38 1 8.2360 -0.1074 3.8622 39 1 10.6994 -0.2422 3.4891 40 1 12.1791 0.0357 0.1907 41 1 12.7019 0.5765 2.9130 42 1 12.5719 -1.1867 2.7062 43 1 14.3143 -1.1076 0.9433 44 1 14.4439 0.6555 1.1506 45 1 15.1138 0.3274 3.5157 46 1 14.9841 -1.4355 3.3078 47 1 18.2143 -0.9753 5.0157 48 1 3.7814 -1.3837 0.0952 49 1 3.9100 -1.4304 1.8706 50 1 1.7326 -0.2709 2.0660 51 1 1.5635 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:00 Heat of formation + Delta-G solvation = -10.025365 kcal Electronic energy + Delta-G solvation = -28800.218909 eV Core-core repulsion = 24733.230148 eV Total energy + Delta-G solvation = -4066.988761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.20138 -40.90642 -39.49525 -38.12832 -36.20076 -35.70874 -34.09411 -33.84879 -32.80654 -31.88286 -31.33484 -28.57663 -27.32692 -26.28046 -25.18371 -24.44582 -24.19181 -23.39632 -22.27451 -21.73076 -21.05403 -19.45238 -18.71902 -18.55337 -18.19683 -17.30875 -16.82956 -16.59259 -16.50273 -16.26968 -16.05333 -15.74888 -15.73820 -15.57902 -15.28734 -14.98770 -14.54322 -14.44568 -14.28196 -14.16045 -13.86494 -13.74549 -13.40463 -13.31899 -12.98811 -12.83933 -12.62618 -12.55280 -12.37476 -12.30933 -12.19404 -12.10911 -11.83531 -11.58642 -11.49243 -11.47047 -11.32459 -11.21267 -11.14970 -10.77757 -10.54202 -10.15639 -9.30972 -9.15892 -8.20244 -6.30055 -0.38662 -0.19584 1.41797 1.42379 1.52842 1.62224 1.80331 2.01795 2.41966 2.66168 2.97509 3.05891 3.14576 3.50985 3.56262 3.67025 3.77324 3.81992 3.99428 4.05417 4.06826 4.14955 4.20033 4.33931 4.42960 4.52505 4.53924 4.57749 4.58963 4.65210 4.72464 4.77871 4.87779 4.88439 4.93362 4.95406 5.01429 5.04519 5.05794 5.13709 5.16330 5.23966 5.44433 5.51741 5.73000 5.78842 5.85330 6.07951 6.10916 6.24626 6.37560 6.43399 6.87062 7.03872 7.39518 7.59068 8.91219 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.045684 B = 0.001320 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.759893 B =21199.918462 C =21520.810677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.555 5.555 3 C 0.059 3.941 4 C -0.118 4.118 5 C 0.144 3.856 6 N -0.698 5.698 7 C 0.589 3.411 8 O -0.565 6.565 9 C -0.058 4.058 10 C -0.023 4.023 11 C -0.186 4.186 12 C 0.356 3.644 13 N -0.691 5.691 14 C 0.128 3.872 15 C -0.107 4.107 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.060 0.940 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.264 1.264 25 N -0.329 5.329 26 N -0.171 5.171 27 C -0.122 4.122 28 C 0.062 3.938 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.035 0.965 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.417 0.583 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.415 0.585 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.000 1.000 46 H 0.000 1.000 47 H 0.263 0.737 48 H 0.075 0.925 49 H 0.058 0.942 50 H 0.032 0.968 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.037 3.313 -8.515 34.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.280 5.280 3 C -0.069 4.069 4 C -0.156 4.156 5 C 0.040 3.960 6 N -0.348 5.348 7 C 0.374 3.626 8 O -0.443 6.443 9 C -0.210 4.210 10 C -0.051 4.051 11 C -0.219 4.219 12 C 0.114 3.886 13 N -0.320 5.320 14 C 0.005 3.995 15 C -0.145 4.145 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.078 0.922 19 C -0.195 4.195 20 N -0.571 5.571 21 Si 0.784 3.216 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.188 1.188 25 N -0.185 5.185 26 N -0.018 5.018 27 C -0.161 4.161 28 C -0.067 4.067 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.254 0.746 38 H 0.190 0.810 39 H 0.190 0.810 40 H 0.252 0.748 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.050 0.950 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -33.213 3.170 -9.432 34.672 hybrid contribution 1.545 0.092 1.654 2.265 sum -31.669 3.262 -7.778 32.773 Atomic orbital electron populations 1.22396 0.86019 1.02724 1.01218 1.61978 1.08779 1.14025 1.43237 1.22075 0.94195 0.89157 1.01514 1.21841 0.95060 1.00780 0.97900 1.21130 0.78128 0.96720 1.00044 1.45863 1.07039 1.71726 1.10219 1.17490 0.84615 0.75945 0.84574 1.90767 1.75401 1.52236 1.25848 1.22369 0.95926 1.10197 0.92490 1.22297 0.92224 0.89710 1.00893 1.22086 0.96796 1.05963 0.97032 1.20345 0.87651 0.88905 0.91734 1.44663 1.00776 1.74606 1.11940 1.21648 0.87619 1.01870 0.88410 1.21596 0.91915 1.01790 0.99171 1.18921 0.93040 0.95593 0.93600 1.21693 0.92995 1.49384 0.94132 0.92153 1.25878 1.03635 0.94863 0.95098 1.70069 1.32695 1.50679 1.03634 0.85541 0.79345 0.78180 0.78559 1.19966 1.20973 1.18846 1.73075 0.96716 1.21261 1.27464 1.72804 1.04287 1.04275 1.20457 1.21917 0.95089 0.96625 1.02496 1.22012 0.94191 0.99011 0.91478 0.90318 0.90849 0.95494 0.94696 0.88708 0.89682 0.89761 0.90930 0.74570 0.80997 0.81006 0.74793 0.90795 0.90804 0.91957 0.91923 0.98167 0.98154 0.92817 0.90677 0.92354 0.94961 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.59 127.69 1.22 1.43 16 2 N -0.56 -6.54 4.91 -922.59 -4.53 -11.08 16 3 C 0.06 0.59 5.46 86.32 0.47 1.07 16 4 C -0.12 -1.28 5.57 30.65 0.17 -1.11 16 5 C 0.14 2.25 2.52 45.07 0.11 2.36 16 6 N -0.70 -12.69 5.07 -445.01 -2.26 -14.95 16 7 C 0.59 13.97 7.77 86.79 0.67 14.64 16 8 O -0.56 -16.00 16.05 -3.88 -0.06 -16.07 16 9 C -0.06 -1.41 6.83 41.99 0.29 -1.12 16 10 C -0.02 -0.51 9.71 22.73 0.22 -0.29 16 11 C -0.19 -4.15 9.39 22.61 0.21 -3.93 16 12 C 0.36 9.09 7.74 133.21 1.03 10.12 16 13 N -0.69 -16.94 5.71 -344.74 -1.97 -18.91 16 14 C 0.13 3.44 4.91 86.38 0.42 3.86 16 15 C -0.11 -3.66 5.27 30.59 0.16 -3.50 16 16 C 0.03 1.24 4.97 29.85 0.15 1.38 16 17 C -0.54 -29.03 9.11 25.60 0.23 -28.80 16 18 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 19 C 0.00 0.19 5.46 84.65 0.46 0.65 16 20 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 21 Si 0.96 42.59 29.54 68.60 2.03 44.61 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 25 N -0.33 -9.08 11.55 -55.17 -0.64 -9.72 16 26 N -0.17 -4.42 10.73 -48.51 -0.52 -4.94 16 27 C -0.12 -1.89 5.67 30.65 0.17 -1.71 16 28 C 0.06 0.80 5.46 86.33 0.47 1.27 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.55 8.09 -2.39 -0.02 0.54 16 31 H 0.03 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.09 0.71 8.12 -2.39 -0.02 0.69 16 34 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.37 7.58 -2.39 -0.02 1.36 16 37 H 0.42 6.69 7.95 -92.71 -0.74 5.95 16 38 H 0.17 3.26 7.71 -2.91 -0.02 3.24 16 39 H 0.17 3.20 6.81 -2.91 -0.02 3.19 16 40 H 0.41 9.58 8.60 -92.71 -0.80 8.79 16 41 H 0.07 1.92 7.95 -2.39 -0.02 1.90 16 42 H 0.07 1.92 7.95 -2.39 -0.02 1.90 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 Total: -1.00 -65.50 416.19 -1.78 -67.28 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.60 Total: 21.34 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 6.48 Total: -3.69 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -9.63 Total: -113.48 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.06 Total: -16.07 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -65.50 -1.78 -67.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.256 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds