Wall clock time and date at job start Wed Apr 1 2020 05:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.29106 * 126.01216 * 2 1 4 4 N 1.29017 * 110.26652 * 179.97438 * 3 2 1 5 5 C 1.32917 * 108.63339 * 359.97284 * 4 3 2 6 6 C 1.34351 * 125.99041 * 179.97438 * 2 1 3 7 7 C 1.50532 * 129.29448 * 0.24986 * 6 2 1 8 8 C 1.53435 * 108.35563 * 163.42956 * 7 6 2 9 9 H 1.08999 * 109.46069 * 289.70037 * 8 7 6 10 10 C 1.50703 * 109.45743 * 169.73092 * 8 7 6 11 11 O 1.21280 * 119.99985 * 335.02768 * 10 8 7 12 12 N 1.34773 * 120.00052 * 155.02434 * 10 8 7 13 13 C 1.46928 * 120.62814 * 4.70815 * 12 10 8 14 14 C 1.52766 * 109.00940 * 233.58059 * 13 12 10 15 15 C 1.53036 * 109.38278 * 305.59139 * 14 13 12 16 16 C 1.53000 * 109.46142 * 181.25935 * 15 14 13 17 17 N 1.46503 * 109.47226 * 64.92875 * 16 15 14 18 18 C 1.36937 * 120.00214 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99515 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00196 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99979 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00209 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47024 * 89.99713 * 22 20 18 24 24 H 1.48498 * 109.47168 * 209.99724 * 22 20 18 25 25 H 1.48499 * 109.47134 * 329.99872 * 22 20 18 26 26 C 1.53040 * 109.54003 * 61.23630 * 15 14 13 27 27 C 1.46927 * 120.63368 * 184.98811 * 12 10 8 28 28 C 1.53112 * 109.55322 * 49.70855 * 8 7 6 29 29 C 1.50593 * 129.16656 * 180.10523 * 5 4 3 30 30 H 1.09004 * 109.47320 * 89.97394 * 1 2 3 31 31 H 1.08998 * 109.47068 * 209.97423 * 1 2 3 32 32 H 1.09000 * 109.46880 * 329.97260 * 1 2 3 33 33 H 1.09003 * 109.69626 * 43.69976 * 7 6 2 34 34 H 1.08999 * 109.69302 * 283.15800 * 7 6 2 35 35 H 1.09000 * 109.59024 * 353.41787 * 13 12 10 36 36 H 1.09001 * 109.58604 * 113.84286 * 13 12 10 37 37 H 1.08994 * 109.56689 * 185.55581 * 14 13 12 38 38 H 1.08998 * 109.38027 * 65.51744 * 14 13 12 39 39 H 1.09001 * 109.46385 * 301.21729 * 15 14 13 40 40 H 1.08996 * 109.47563 * 184.93402 * 16 15 14 41 41 H 1.09008 * 109.46783 * 304.92871 * 16 15 14 42 42 H 0.96993 * 119.99578 * 0.02562 * 17 16 15 43 43 H 0.96997 * 120.00081 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.49837 * 178.68115 * 26 15 14 45 45 H 1.09005 * 109.52275 * 58.60553 * 26 15 14 46 46 H 1.09002 * 109.58512 * 246.15778 * 27 12 10 47 47 H 1.08999 * 109.58556 * 6.43381 * 27 12 10 48 48 H 1.09001 * 109.45239 * 49.98259 * 28 8 7 49 49 H 1.08999 * 109.44805 * 169.91091 * 28 8 7 50 50 H 1.08999 * 109.69448 * 43.76412 * 29 5 4 51 51 H 1.09004 * 109.71841 * 283.20586 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2240 1.0443 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6333 0.0015 6 6 2.2545 -1.0871 0.0005 7 6 1.8721 -2.5430 -0.0039 8 6 3.1008 -3.3640 -0.4167 9 1 3.3128 -3.1947 -1.4724 10 6 2.8262 -4.8281 -0.1882 11 8 2.0067 -5.1696 0.6380 12 7 3.4911 -5.7579 -0.9022 13 6 4.5587 -5.3653 -1.8322 14 6 4.2621 -5.9573 -3.2088 15 6 4.0651 -7.4695 -3.0797 16 6 3.7989 -8.0687 -4.4620 17 7 4.9863 -7.9015 -5.3037 18 6 4.9824 -8.3634 -6.5928 19 1 4.1041 -8.8514 -6.9889 20 6 6.1076 -8.2055 -7.3901 21 7 7.1782 -7.6112 -6.9072 22 14 6.1026 -8.8362 -9.1483 23 1 5.6145 -7.7673 -10.0563 24 1 7.4815 -9.2256 -9.5385 25 1 5.2078 -10.0172 -9.2480 26 6 2.8734 -7.7539 -2.1626 27 6 3.1581 -7.1828 -0.7700 28 6 4.3087 -2.9350 0.4208 29 6 4.7467 -1.5243 0.0046 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5143 33 1 1.0637 -2.7084 -0.7162 34 1 1.5493 -2.8410 0.9936 35 1 4.5992 -4.2784 -1.9043 36 1 5.5148 -5.7455 -1.4723 37 1 5.0963 -5.7552 -3.8806 38 1 3.3547 -5.5051 -3.6092 39 1 4.9639 -7.9180 -2.6566 40 1 3.5720 -9.1300 -4.3605 41 1 2.9525 -7.5588 -4.9223 42 1 5.7752 -7.4636 -4.9478 43 1 7.9646 -7.5011 -7.4642 44 1 2.7191 -8.8305 -2.0897 45 1 1.9785 -7.2851 -2.5721 46 1 3.9976 -7.7142 -0.3217 47 1 2.2761 -7.2949 -0.1393 48 1 4.0370 -2.9354 1.4764 49 1 5.1299 -3.6329 0.2574 50 1 5.4799 -1.1438 0.7157 51 1 5.1840 -1.5536 -0.9935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206050943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:26 Heat of formation + Delta-G solvation = 61.610739 kcal Electronic energy + Delta-G solvation = -31030.920819 eV Core-core repulsion = 26967.038432 eV Total energy + Delta-G solvation = -4063.882387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.68697 -40.63956 -38.13103 -36.83029 -35.21279 -35.00233 -32.95021 -31.52795 -30.94950 -30.47103 -30.25621 -28.19614 -26.88188 -25.07345 -23.94059 -23.31508 -23.21234 -21.82262 -21.61571 -20.58135 -19.81185 -18.92801 -17.78451 -17.35033 -17.09626 -16.83363 -15.97137 -15.44229 -15.06064 -14.81195 -14.41642 -14.30003 -14.25932 -14.16322 -14.01840 -13.80925 -13.69283 -13.58796 -13.23645 -13.19732 -12.87833 -12.53775 -12.49347 -12.27325 -12.21555 -11.85799 -11.78876 -11.48569 -11.40493 -11.14225 -11.03210 -10.86921 -10.85081 -10.46237 -10.39400 -10.34856 -10.23887 -10.03502 -9.79298 -9.68484 -9.11513 -8.90469 -8.71424 -6.94971 -5.80225 -3.08382 1.26631 1.99507 2.27766 2.42223 2.81598 3.41112 3.46638 3.48032 3.78471 4.01261 4.22826 4.30250 4.43372 4.48601 4.53226 4.55826 4.67671 4.76873 4.82683 4.88861 4.97508 5.02749 5.07179 5.09063 5.13308 5.22180 5.30822 5.42996 5.48351 5.49884 5.51894 5.59323 5.64936 5.70454 5.73278 5.80243 5.89247 5.91347 5.97310 6.04364 6.12890 6.22868 6.25445 6.36752 6.40299 6.58078 6.75885 6.86815 7.26735 7.67175 7.98332 8.24285 8.39274 9.50516 10.08175 10.42814 11.42741 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.002256 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.733609 B =12405.850890 C =13365.827767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.098 5.098 4 N -0.260 5.260 5 C -0.019 4.019 6 C -0.015 4.015 7 C -0.027 4.027 8 C -0.104 4.104 9 H 0.104 0.896 10 C 0.524 3.476 11 O -0.548 6.548 12 N -0.604 5.604 13 C 0.101 3.899 14 C -0.127 4.127 15 C -0.094 4.094 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.126 4.126 27 C 0.113 3.887 28 C -0.109 4.109 29 C -0.031 4.031 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.474 10.961 18.194 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.075 5.075 3 N -0.076 5.076 4 N -0.125 5.125 5 C -0.159 4.159 6 C -0.150 4.150 7 C -0.067 4.067 8 C -0.126 4.126 9 H 0.122 0.878 10 C 0.312 3.688 11 O -0.426 6.426 12 N -0.336 5.336 13 C -0.022 4.022 14 C -0.165 4.165 15 C -0.113 4.113 16 C 0.030 3.970 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.165 4.165 27 C -0.009 4.009 28 C -0.147 4.147 29 C -0.071 4.071 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.109 0.891 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.962 12.283 18.472 25.202 hybrid contribution 0.047 -1.263 -1.145 1.705 sum -11.915 11.020 17.327 23.741 Atomic orbital electron populations 1.22301 0.72703 1.06024 1.05225 1.46806 1.09208 1.04575 1.46958 1.78591 0.96129 1.11237 1.21666 1.74806 1.09574 1.11932 1.16165 1.21704 0.94950 0.91372 1.07917 1.21762 0.91290 0.92133 1.09774 1.19953 0.97505 0.84919 1.04313 1.21357 0.96570 0.91708 1.02945 0.87800 1.20309 0.80458 0.87511 0.80561 1.90671 1.35214 1.82258 1.34418 1.48150 1.36481 1.07069 1.41909 1.21910 0.89886 1.00484 0.89879 1.21864 1.03439 0.95809 0.95370 1.21302 0.97922 0.95394 0.96644 1.20667 0.91029 0.96683 0.88581 1.42367 1.12882 1.71226 1.11144 1.19223 0.98526 1.30667 0.88594 0.91295 1.24721 0.96234 1.01562 0.98456 1.69644 1.03941 1.48481 1.36217 0.86202 0.76719 0.78392 0.84960 1.21742 1.21757 1.20806 1.21913 0.98977 1.01181 0.94381 1.21639 1.01743 0.79747 0.97817 1.21624 0.96528 0.96311 1.00252 1.19967 0.92590 0.90962 1.03534 0.88856 0.88184 0.87883 0.89767 0.88117 0.89629 0.90769 0.89179 0.91827 0.90910 0.96393 0.96493 0.78272 0.93508 0.90604 0.91647 0.91430 0.89281 0.90462 0.89701 0.89134 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.27 59.84 0.67 1.03 16 2 N -0.28 -2.70 3.73 -64.01 -0.24 -2.94 16 3 N -0.10 -1.24 13.19 60.35 0.80 -0.45 16 4 N -0.26 -3.51 12.40 33.17 0.41 -3.10 16 5 C -0.02 -0.21 7.11 -83.10 -0.59 -0.80 16 6 C -0.02 -0.15 6.77 -82.50 -0.56 -0.71 16 7 C -0.03 -0.22 4.96 -27.74 -0.14 -0.36 16 8 C -0.10 -0.87 1.64 -91.49 -0.15 -1.02 16 9 H 0.10 0.82 6.45 -51.93 -0.33 0.49 16 10 C 0.52 5.68 6.78 -10.99 -0.07 5.61 16 11 O -0.55 -7.51 15.32 5.56 0.09 -7.42 16 12 N -0.60 -6.39 2.98 -173.03 -0.52 -6.91 16 13 C 0.10 1.00 5.78 -3.93 -0.02 0.98 16 14 C -0.13 -1.65 5.23 -26.83 -0.14 -1.80 16 15 C -0.09 -1.33 2.19 -90.58 -0.20 -1.53 16 16 C 0.16 2.98 5.65 -4.04 -0.02 2.96 16 17 N -0.73 -17.62 5.32 -59.91 -0.32 -17.94 16 18 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C -0.13 -1.47 5.36 -26.61 -0.14 -1.62 16 27 C 0.11 1.22 6.42 -3.71 -0.02 1.20 16 28 C -0.11 -0.80 4.92 -26.43 -0.13 -0.93 16 29 C -0.03 -0.25 6.30 -27.69 -0.17 -0.43 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.26 7.96 -51.93 -0.41 -0.15 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.86 7.51 -51.93 -0.39 0.47 16 35 H 0.09 0.69 5.21 -51.93 -0.27 0.42 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.39 7.15 -51.93 -0.37 1.01 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.38 9.56 6.84 -40.82 -0.28 9.28 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.01 7.03 -51.93 -0.37 0.65 16 48 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 49 H 0.08 0.55 7.49 -51.93 -0.39 0.16 16 50 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -34.88 398.49 -8.29 -43.17 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.28 Total: 3.89 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.94 Total: -4.58 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.86 Total: -58.08 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.88 -8.29 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206050943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.778 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds