Wall clock time and date at job start Wed Apr 1 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.29106 * 126.01216 * 2 1 4 4 N 1.29017 * 110.26652 * 179.97438 * 3 2 1 5 5 C 1.32917 * 108.63339 * 359.97284 * 4 3 2 6 6 C 1.34351 * 125.99041 * 179.97438 * 2 1 3 7 7 C 1.50532 * 129.29448 * 0.24986 * 6 2 1 8 8 C 1.53435 * 108.35563 * 163.42956 * 7 6 2 9 9 H 1.08999 * 109.46069 * 289.70037 * 8 7 6 10 10 C 1.50703 * 109.45743 * 169.73092 * 8 7 6 11 11 O 1.21280 * 119.99985 * 335.02768 * 10 8 7 12 12 N 1.34773 * 120.00052 * 155.02434 * 10 8 7 13 13 C 1.46928 * 120.62814 * 4.70815 * 12 10 8 14 14 C 1.52766 * 109.00940 * 233.58059 * 13 12 10 15 15 C 1.53036 * 109.38278 * 305.59139 * 14 13 12 16 16 C 1.53000 * 109.46142 * 181.25935 * 15 14 13 17 17 N 1.46503 * 109.47226 * 64.92875 * 16 15 14 18 18 C 1.36937 * 120.00214 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99515 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00196 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99979 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00209 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47024 * 89.99713 * 22 20 18 24 24 H 1.48498 * 109.47168 * 209.99724 * 22 20 18 25 25 H 1.48499 * 109.47134 * 329.99872 * 22 20 18 26 26 C 1.53040 * 109.54003 * 61.23630 * 15 14 13 27 27 C 1.46927 * 120.63368 * 184.98811 * 12 10 8 28 28 C 1.53112 * 109.55322 * 49.70855 * 8 7 6 29 29 C 1.50593 * 129.16656 * 180.10523 * 5 4 3 30 30 H 1.09004 * 109.47320 * 89.97394 * 1 2 3 31 31 H 1.08998 * 109.47068 * 209.97423 * 1 2 3 32 32 H 1.09000 * 109.46880 * 329.97260 * 1 2 3 33 33 H 1.09003 * 109.69626 * 43.69976 * 7 6 2 34 34 H 1.08999 * 109.69302 * 283.15800 * 7 6 2 35 35 H 1.09000 * 109.59024 * 353.41787 * 13 12 10 36 36 H 1.09001 * 109.58604 * 113.84286 * 13 12 10 37 37 H 1.08994 * 109.56689 * 185.55581 * 14 13 12 38 38 H 1.08998 * 109.38027 * 65.51744 * 14 13 12 39 39 H 1.09001 * 109.46385 * 301.21729 * 15 14 13 40 40 H 1.08996 * 109.47563 * 184.93402 * 16 15 14 41 41 H 1.09008 * 109.46783 * 304.92871 * 16 15 14 42 42 H 0.96993 * 119.99578 * 0.02562 * 17 16 15 43 43 H 0.96997 * 120.00081 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.49837 * 178.68115 * 26 15 14 45 45 H 1.09005 * 109.52275 * 58.60553 * 26 15 14 46 46 H 1.09002 * 109.58512 * 246.15778 * 27 12 10 47 47 H 1.08999 * 109.58556 * 6.43381 * 27 12 10 48 48 H 1.09001 * 109.45239 * 49.98259 * 28 8 7 49 49 H 1.08999 * 109.44805 * 169.91091 * 28 8 7 50 50 H 1.08999 * 109.69448 * 43.76412 * 29 5 4 51 51 H 1.09004 * 109.71841 * 283.20586 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2240 1.0443 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6333 0.0015 6 6 2.2545 -1.0871 0.0005 7 6 1.8721 -2.5430 -0.0039 8 6 3.1008 -3.3640 -0.4167 9 1 3.3128 -3.1947 -1.4724 10 6 2.8262 -4.8281 -0.1882 11 8 2.0067 -5.1696 0.6380 12 7 3.4911 -5.7579 -0.9022 13 6 4.5587 -5.3653 -1.8322 14 6 4.2621 -5.9573 -3.2088 15 6 4.0651 -7.4695 -3.0797 16 6 3.7989 -8.0687 -4.4620 17 7 4.9863 -7.9015 -5.3037 18 6 4.9824 -8.3634 -6.5928 19 1 4.1041 -8.8514 -6.9889 20 6 6.1076 -8.2055 -7.3901 21 7 7.1782 -7.6112 -6.9072 22 14 6.1026 -8.8362 -9.1483 23 1 5.6145 -7.7673 -10.0563 24 1 7.4815 -9.2256 -9.5385 25 1 5.2078 -10.0172 -9.2480 26 6 2.8734 -7.7539 -2.1626 27 6 3.1581 -7.1828 -0.7700 28 6 4.3087 -2.9350 0.4208 29 6 4.7467 -1.5243 0.0046 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5143 33 1 1.0637 -2.7084 -0.7162 34 1 1.5493 -2.8410 0.9936 35 1 4.5992 -4.2784 -1.9043 36 1 5.5148 -5.7455 -1.4723 37 1 5.0963 -5.7552 -3.8806 38 1 3.3547 -5.5051 -3.6092 39 1 4.9639 -7.9180 -2.6566 40 1 3.5720 -9.1300 -4.3605 41 1 2.9525 -7.5588 -4.9223 42 1 5.7752 -7.4636 -4.9478 43 1 7.9646 -7.5011 -7.4642 44 1 2.7191 -8.8305 -2.0897 45 1 1.9785 -7.2851 -2.5721 46 1 3.9976 -7.7142 -0.3217 47 1 2.2761 -7.2949 -0.1393 48 1 4.0370 -2.9354 1.4764 49 1 5.1299 -3.6329 0.2574 50 1 5.4799 -1.1438 0.7157 51 1 5.1840 -1.5536 -0.9935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206050943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:25 Heat of formation + Delta-G solvation = 39.054551 kcal Electronic energy + Delta-G solvation = -31031.898929 eV Core-core repulsion = 26967.038432 eV Total energy + Delta-G solvation = -4064.860496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.44384 -41.50047 -39.14590 -37.60957 -36.53350 -35.89053 -34.45389 -32.64013 -31.91708 -31.56572 -31.19312 -28.75902 -28.23343 -26.12202 -25.16726 -24.29069 -24.22491 -23.00026 -22.39208 -21.59557 -20.69800 -19.78749 -19.15691 -18.45835 -17.99685 -17.63223 -16.82832 -16.68711 -16.23596 -15.81357 -15.62553 -15.31234 -15.30707 -15.04081 -14.94815 -14.81087 -14.72436 -14.36850 -14.10196 -13.99813 -13.88008 -13.69147 -13.49091 -13.21845 -13.02276 -12.93087 -12.88881 -12.73459 -12.57496 -12.19752 -12.18164 -12.13003 -11.94936 -11.89319 -11.64007 -11.58208 -11.43286 -11.27638 -10.95154 -10.90323 -10.66434 -9.87554 -9.61880 -8.95506 -7.93410 -5.20673 0.52610 1.40648 1.46596 1.48777 1.49332 1.57772 1.60593 2.00261 2.57459 3.10148 3.33417 3.40334 3.62710 3.72948 3.76848 3.78264 3.82109 3.89490 3.97138 4.08702 4.19145 4.19601 4.25087 4.33956 4.40976 4.44794 4.48649 4.52659 4.56151 4.63765 4.64839 4.77846 4.83683 4.87802 4.89464 4.91831 4.99091 5.02727 5.05706 5.11318 5.12898 5.19152 5.21787 5.31730 5.35379 5.50059 5.58195 5.60577 5.63390 6.29960 6.42639 7.14252 7.36879 7.44175 8.13800 8.37668 9.29855 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.002256 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.733609 B =12405.850890 C =13365.827767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.277 5.277 3 N -0.130 5.130 4 N -0.300 5.300 5 C -0.033 4.033 6 C -0.013 4.013 7 C -0.020 4.020 8 C -0.100 4.100 9 H 0.113 0.887 10 C 0.527 3.473 11 O -0.576 6.576 12 N -0.603 5.603 13 C 0.108 3.892 14 C -0.122 4.122 15 C -0.084 4.084 16 C 0.156 3.844 17 N -0.742 5.742 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.072 4.072 21 N -0.966 5.966 22 Si 0.968 3.032 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.272 1.272 26 C -0.115 4.115 27 C 0.115 3.885 28 C -0.101 4.101 29 C -0.029 4.029 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.099 0.901 50 H 0.096 0.904 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.418 10.482 18.656 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.070 5.070 3 N -0.107 5.107 4 N -0.163 5.163 5 C -0.174 4.174 6 C -0.149 4.149 7 C -0.060 4.060 8 C -0.121 4.121 9 H 0.131 0.869 10 C 0.316 3.684 11 O -0.456 6.456 12 N -0.335 5.335 13 C -0.014 4.014 14 C -0.160 4.160 15 C -0.103 4.103 16 C 0.030 3.970 17 N -0.385 5.385 18 C -0.377 4.377 19 H 0.089 0.911 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.798 3.202 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.197 1.197 26 C -0.154 4.154 27 C -0.007 4.007 28 C -0.140 4.140 29 C -0.068 4.068 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.117 0.883 50 H 0.114 0.886 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.954 11.814 18.944 25.812 hybrid contribution 0.226 -1.159 -1.269 1.734 sum -12.728 10.654 17.675 24.247 Atomic orbital electron populations 1.22747 0.70125 1.07715 1.06804 1.47192 1.10682 1.03900 1.45193 1.78501 0.96405 1.12493 1.23332 1.74747 1.10352 1.13489 1.17717 1.22240 0.96539 0.90956 1.07698 1.21991 0.91042 0.92737 1.09097 1.19939 0.97767 0.83700 1.04562 1.21356 0.97113 0.90009 1.03667 0.86890 1.20617 0.79678 0.88245 0.79863 1.90666 1.36436 1.82811 1.35689 1.48189 1.36495 1.07037 1.41772 1.21893 0.89992 1.01746 0.87735 1.21755 1.02204 0.95081 0.96952 1.21189 0.98923 0.95925 0.94257 1.20830 0.89016 0.96783 0.90411 1.42547 1.14185 1.70871 1.10870 1.19593 0.98371 1.29714 0.89974 0.91132 1.25478 0.96187 1.02606 1.02222 1.69783 1.04394 1.50105 1.37389 0.85218 0.76437 0.78054 0.80527 1.21515 1.22167 1.19715 1.21812 0.97415 1.01891 0.94295 1.21600 1.02154 0.80048 0.96882 1.21586 0.96497 0.96104 0.99776 1.20052 0.91777 0.90675 1.04271 0.87269 0.86031 0.86789 0.88539 0.88306 0.87317 0.89697 0.91699 0.92206 0.91254 0.96633 0.96830 0.79054 0.93991 0.89744 0.91937 0.90349 0.89504 0.90843 0.88259 0.88591 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 11.27 127.77 1.44 1.91 16 2 N -0.28 -4.99 3.73 -356.42 -1.33 -6.31 16 3 N -0.13 -3.27 13.19 37.02 0.49 -2.78 16 4 N -0.30 -8.11 12.40 -48.96 -0.61 -8.72 16 5 C -0.03 -0.69 7.11 41.76 0.30 -0.39 16 6 C -0.01 -0.24 6.77 41.52 0.28 0.04 16 7 C -0.02 -0.29 4.96 29.94 0.15 -0.14 16 8 C -0.10 -1.42 1.64 -11.36 -0.02 -1.44 16 9 H 0.11 1.44 6.45 -2.39 -0.02 1.43 16 10 C 0.53 10.13 6.78 87.66 0.59 10.73 16 11 O -0.58 -14.62 15.32 -3.03 -0.05 -14.66 16 12 N -0.60 -11.24 2.98 -819.73 -2.44 -13.68 16 13 C 0.11 1.88 5.78 86.22 0.50 2.38 16 14 C -0.12 -3.03 5.23 30.53 0.16 -2.87 16 15 C -0.08 -2.29 2.19 -10.77 -0.02 -2.32 16 16 C 0.16 5.81 5.65 86.38 0.49 6.30 16 17 N -0.74 -35.81 5.32 -343.44 -1.83 -37.64 16 18 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 19 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 21 N -0.97 -57.29 13.06 21.65 0.28 -57.01 16 22 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C -0.12 -2.48 5.36 30.67 0.16 -2.32 16 27 C 0.12 2.23 6.42 86.36 0.55 2.79 16 28 C -0.10 -1.25 4.92 30.79 0.15 -1.10 16 29 C -0.03 -0.41 6.30 29.97 0.19 -0.23 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.12 0.34 7.96 -2.39 -0.02 0.33 16 32 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.49 7.51 -2.39 -0.02 1.48 16 35 H 0.11 1.42 5.21 -2.39 -0.01 1.41 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.98 7.15 -2.39 -0.02 1.96 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.38 19.00 6.84 -92.71 -0.63 18.37 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.09 1.79 7.03 -2.39 -0.02 1.77 16 48 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 49 H 0.10 0.97 7.49 -2.39 -0.02 0.95 16 50 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -75.51 398.49 3.08 -72.43 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.30 Total: 23.82 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 6.23 Total: -2.75 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -5.43 Total: -126.15 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.05 Total: -14.66 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -75.51 3.08 -72.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206050943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.485 kcal (2) G-P(sol) polarization free energy of solvation -75.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds