Wall clock time and date at job start Wed Apr 1 2020 05:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.29103 * 126.01092 * 2 1 4 4 N 1.29012 * 110.26049 * 180.02562 * 3 2 1 5 5 C 1.32916 * 108.63669 * 0.02583 * 4 3 2 6 6 C 1.34392 * 126.00401 * 179.97438 * 2 1 3 7 7 C 1.50544 * 129.25626 * 359.84855 * 6 2 1 8 8 C 1.53437 * 108.32397 * 196.44355 * 7 6 2 9 9 H 1.08996 * 109.45832 * 70.31361 * 8 7 6 10 10 C 1.50702 * 109.45319 * 190.27817 * 8 7 6 11 11 O 1.21284 * 120.00483 * 24.69965 * 10 8 7 12 12 N 1.34781 * 119.99915 * 204.69972 * 10 8 7 13 13 C 1.46927 * 120.62791 * 4.42502 * 12 10 8 14 14 C 1.52759 * 109.00729 * 233.58376 * 13 12 10 15 15 C 1.53033 * 109.38488 * 305.58694 * 14 13 12 16 16 C 1.52999 * 109.44936 * 181.25379 * 15 14 13 17 17 N 1.46499 * 109.46958 * 64.94054 * 16 15 14 18 18 C 1.36939 * 119.99771 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99920 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00048 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99981 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00178 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47042 * 90.00158 * 22 20 18 24 24 H 1.48501 * 109.47190 * 210.00136 * 22 20 18 25 25 H 1.48499 * 109.47021 * 329.99831 * 22 20 18 26 26 C 1.53050 * 109.53553 * 61.24269 * 15 14 13 27 27 C 1.46919 * 120.63368 * 184.70606 * 12 10 8 28 28 C 1.53104 * 109.55361 * 310.28686 * 8 7 6 29 29 C 1.50598 * 129.15996 * 179.78341 * 5 4 3 30 30 H 1.09003 * 109.47126 * 270.00273 * 1 2 3 31 31 H 1.09001 * 109.46564 * 29.99750 * 1 2 3 32 32 H 1.09000 * 109.47477 * 149.99795 * 1 2 3 33 33 H 1.09004 * 109.69187 * 76.73675 * 7 6 2 34 34 H 1.08999 * 109.72157 * 316.17249 * 7 6 2 35 35 H 1.09004 * 109.58965 * 353.42082 * 13 12 10 36 36 H 1.09000 * 109.58586 * 113.84651 * 13 12 10 37 37 H 1.09005 * 109.56127 * 185.55478 * 14 13 12 38 38 H 1.09002 * 109.38355 * 65.51881 * 14 13 12 39 39 H 1.08995 * 109.46457 * 301.22531 * 15 14 13 40 40 H 1.09000 * 109.47019 * 184.94268 * 16 15 14 41 41 H 1.09001 * 109.47219 * 304.94172 * 16 15 14 42 42 H 0.96991 * 120.00005 * 0.02562 * 17 16 15 43 43 H 0.96997 * 119.99680 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.49517 * 178.68202 * 26 15 14 45 45 H 1.09004 * 109.52306 * 58.60014 * 26 15 14 46 46 H 1.08993 * 109.58895 * 246.16064 * 27 12 10 47 47 H 1.09005 * 109.58549 * 6.57956 * 27 12 10 48 48 H 1.09004 * 109.44981 * 190.09801 * 28 8 7 49 49 H 1.09002 * 109.45304 * 310.03156 * 28 8 7 50 50 H 1.08997 * 109.68999 * 316.32433 * 29 5 4 51 51 H 1.08992 * 109.69536 * 76.87040 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0443 0.0000 4 7 3.4658 0.6941 -0.0005 5 6 3.5327 -0.6334 -0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8720 -2.5431 0.0042 8 6 3.1012 -3.3642 0.4155 9 1 3.3138 -3.1956 1.4712 10 6 2.8265 -4.8281 0.1863 11 8 2.0029 -5.1692 -0.6361 12 7 3.4960 -5.7585 0.8953 13 6 4.4254 -5.3614 1.9618 14 6 5.7828 -6.0143 1.7074 15 6 5.5999 -7.5269 1.5636 16 6 6.9625 -8.1858 1.3400 17 7 7.7936 -8.0060 2.5330 18 6 9.0642 -8.5156 2.5654 19 1 9.4538 -9.0497 1.7113 20 6 9.8518 -8.3449 3.6956 21 7 9.3772 -7.6936 4.7363 22 14 11.5854 -9.0394 3.7396 23 1 12.5388 -8.0235 3.2256 24 1 11.9425 -9.3909 5.1375 25 1 11.6529 -10.2560 2.8907 26 6 4.6891 -7.8210 0.3693 27 6 3.3151 -7.1888 0.6123 28 6 4.3083 -2.9348 -0.4227 29 6 4.7468 -1.5244 -0.0068 30 1 -0.3633 0.0000 1.0277 31 1 -0.3632 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.5487 -2.8404 -0.9934 34 1 1.0641 -2.7090 0.7168 35 1 4.5376 -4.2772 1.9637 36 1 4.0386 -5.6926 2.9255 37 1 6.4502 -5.8065 2.5438 38 1 6.2121 -5.6109 0.7903 39 1 5.1482 -7.9260 2.4717 40 1 6.8246 -9.2503 1.1502 41 1 7.4529 -7.7245 0.4827 42 1 7.4435 -7.5267 3.3001 43 1 9.9275 -7.5746 5.5261 44 1 4.5782 -8.8992 0.2533 45 1 5.1281 -7.4009 -0.5357 46 1 2.8359 -7.6720 1.4637 47 1 2.6949 -7.3100 -0.2759 48 1 5.1297 -3.6328 -0.2605 49 1 4.0357 -2.9345 -1.4781 50 1 5.4792 -1.1429 -0.7183 51 1 5.1849 -1.5543 0.9908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206050945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:31 Heat of formation + Delta-G solvation = 62.051405 kcal Electronic energy + Delta-G solvation = -31090.148098 eV Core-core repulsion = 27026.284820 eV Total energy + Delta-G solvation = -4063.863278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.68694 -40.63903 -38.11179 -36.82412 -35.21467 -34.99551 -32.94019 -31.52419 -30.93063 -30.45629 -30.25914 -28.20194 -26.87584 -25.07367 -23.88655 -23.41076 -23.12711 -21.80374 -21.62938 -20.54452 -19.93252 -18.77540 -17.78985 -17.34681 -17.08621 -16.84951 -15.94824 -15.48455 -15.07656 -14.79778 -14.41084 -14.29222 -14.24343 -14.16985 -13.97084 -13.81816 -13.66683 -13.58089 -13.23539 -13.20047 -12.85337 -12.59159 -12.48054 -12.22702 -12.19897 -11.88846 -11.75487 -11.45820 -11.33568 -11.16774 -11.01880 -10.85920 -10.83700 -10.45583 -10.38802 -10.33652 -10.23275 -10.02518 -9.78626 -9.67592 -9.11341 -8.89484 -8.71247 -6.94021 -5.79410 -3.07495 1.26229 1.99073 2.28388 2.41451 2.82199 3.42065 3.47602 3.48887 3.78940 4.01934 4.23050 4.31858 4.44905 4.48726 4.51177 4.56779 4.69058 4.76099 4.80477 4.90442 4.97147 5.04532 5.08396 5.11927 5.13706 5.23955 5.30908 5.45200 5.49054 5.51130 5.53091 5.60210 5.67287 5.73424 5.74660 5.83490 5.90361 5.92508 5.99527 6.05331 6.14169 6.23636 6.25190 6.37242 6.41684 6.58966 6.76902 6.87957 7.26902 7.68215 7.98483 8.24486 8.40114 9.51382 10.09068 10.43629 11.43538 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.002250 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.059641 B =12440.989007 C =13728.835148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.285 5.285 3 N -0.098 5.098 4 N -0.260 5.260 5 C -0.017 4.017 6 C -0.017 4.017 7 C -0.027 4.027 8 C -0.103 4.103 9 H 0.102 0.898 10 C 0.524 3.476 11 O -0.548 6.548 12 N -0.604 5.604 13 C 0.100 3.900 14 C -0.126 4.126 15 C -0.094 4.094 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.126 4.126 27 C 0.113 3.887 28 C -0.109 4.109 29 C -0.032 4.032 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.461 11.297 -9.299 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.077 5.077 3 N -0.076 5.076 4 N -0.125 5.125 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.067 4.067 8 C -0.125 4.125 9 H 0.121 0.879 10 C 0.311 3.689 11 O -0.426 6.426 12 N -0.336 5.336 13 C -0.022 4.022 14 C -0.164 4.164 15 C -0.113 4.113 16 C 0.030 3.970 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.165 4.165 27 C -0.009 4.009 28 C -0.147 4.147 29 C -0.071 4.071 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.107 0.893 48 H 0.105 0.895 49 H 0.095 0.905 50 H 0.110 0.890 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.754 12.612 -9.770 26.177 hybrid contribution 0.685 -1.291 0.511 1.548 sum -20.068 11.321 -9.259 24.832 Atomic orbital electron populations 1.22291 0.72760 1.06030 1.05126 1.46820 1.09168 1.04588 1.47083 1.78589 0.96159 1.11250 1.21639 1.74815 1.09521 1.11964 1.16150 1.21720 0.94994 0.91356 1.07689 1.21758 0.91286 0.92112 1.09920 1.19961 0.97450 0.84945 1.04309 1.21356 0.96585 0.91672 1.02906 0.87949 1.20321 0.80503 0.87540 0.80498 1.90672 1.34237 1.82288 1.35365 1.48151 1.43258 1.06632 1.35567 1.21907 0.90071 1.00301 0.89916 1.21862 0.95399 0.95502 1.03613 1.21304 0.96755 0.95302 0.97915 1.20666 0.88816 0.96476 0.90997 1.42366 1.13328 1.67514 1.14403 1.19226 0.90085 1.28194 0.99452 0.91276 1.24724 0.98582 1.01265 0.96430 1.69648 1.36795 1.46623 1.05245 0.86202 0.84782 0.78569 0.76717 1.21714 1.21794 1.20812 1.21920 0.94587 1.00888 0.99080 1.21639 0.97812 0.79450 1.02048 1.21612 0.96577 0.96365 1.00168 1.19970 0.92542 0.90941 1.03618 0.88937 0.87894 0.88207 0.88121 0.89862 0.89626 0.90976 0.89180 0.91645 0.90985 0.96421 0.96409 0.78286 0.93531 0.90629 0.91552 0.91478 0.89275 0.89456 0.90490 0.89043 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.33 11.27 59.85 0.67 1.00 16 2 N -0.28 -2.65 3.73 -64.00 -0.24 -2.89 16 3 N -0.10 -1.23 13.19 60.35 0.80 -0.44 16 4 N -0.26 -3.53 12.40 33.16 0.41 -3.12 16 5 C -0.02 -0.19 7.11 -83.12 -0.59 -0.78 16 6 C -0.02 -0.16 6.76 -82.50 -0.56 -0.72 16 7 C -0.03 -0.21 4.96 -27.73 -0.14 -0.35 16 8 C -0.10 -0.86 1.66 -91.49 -0.15 -1.02 16 9 H 0.10 0.76 6.27 -51.93 -0.33 0.43 16 10 C 0.52 5.68 6.78 -10.98 -0.07 5.60 16 11 O -0.55 -7.51 15.32 5.55 0.09 -7.43 16 12 N -0.60 -6.38 2.98 -173.04 -0.52 -6.90 16 13 C 0.10 1.00 6.24 -3.93 -0.02 0.97 16 14 C -0.13 -1.61 5.23 -26.84 -0.14 -1.75 16 15 C -0.09 -1.33 2.19 -90.58 -0.20 -1.52 16 16 C 0.16 2.97 5.65 -4.04 -0.02 2.94 16 17 N -0.73 -17.56 5.32 -59.91 -0.32 -17.87 16 18 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.13 -1.47 5.36 -26.61 -0.14 -1.61 16 27 C 0.11 1.22 6.42 -3.72 -0.02 1.20 16 28 C -0.11 -0.89 5.02 -26.45 -0.13 -1.02 16 29 C -0.03 -0.27 6.30 -27.70 -0.17 -0.45 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.23 7.96 -51.93 -0.41 -0.18 16 33 H 0.10 0.86 7.51 -51.93 -0.39 0.47 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.69 5.34 -51.93 -0.28 0.41 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.37 7.15 -51.93 -0.37 1.00 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.38 9.53 6.84 -40.82 -0.28 9.25 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.02 7.03 -51.93 -0.37 0.65 16 48 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 49 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 50 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -34.76 399.61 -8.31 -43.07 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.31 Total: 3.92 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.94 Total: -4.66 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.86 Total: -57.95 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.43 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.76 -8.31 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206050945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.119 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds