Wall clock time and date at job start Wed Apr 1 2020 05:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.29103 * 126.01092 * 2 1 4 4 N 1.29012 * 110.26049 * 180.02562 * 3 2 1 5 5 C 1.32916 * 108.63669 * 0.02583 * 4 3 2 6 6 C 1.34392 * 126.00401 * 179.97438 * 2 1 3 7 7 C 1.50544 * 129.25626 * 359.84855 * 6 2 1 8 8 C 1.53437 * 108.32397 * 196.44355 * 7 6 2 9 9 H 1.08996 * 109.45832 * 70.31361 * 8 7 6 10 10 C 1.50702 * 109.45319 * 190.27817 * 8 7 6 11 11 O 1.21284 * 120.00483 * 24.69965 * 10 8 7 12 12 N 1.34781 * 119.99915 * 204.69972 * 10 8 7 13 13 C 1.46927 * 120.62791 * 4.42502 * 12 10 8 14 14 C 1.52759 * 109.00729 * 233.58376 * 13 12 10 15 15 C 1.53033 * 109.38488 * 305.58694 * 14 13 12 16 16 C 1.52999 * 109.44936 * 181.25379 * 15 14 13 17 17 N 1.46499 * 109.46958 * 64.94054 * 16 15 14 18 18 C 1.36939 * 119.99771 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99920 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00048 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99981 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00178 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47042 * 90.00158 * 22 20 18 24 24 H 1.48501 * 109.47190 * 210.00136 * 22 20 18 25 25 H 1.48499 * 109.47021 * 329.99831 * 22 20 18 26 26 C 1.53050 * 109.53553 * 61.24269 * 15 14 13 27 27 C 1.46919 * 120.63368 * 184.70606 * 12 10 8 28 28 C 1.53104 * 109.55361 * 310.28686 * 8 7 6 29 29 C 1.50598 * 129.15996 * 179.78341 * 5 4 3 30 30 H 1.09003 * 109.47126 * 270.00273 * 1 2 3 31 31 H 1.09001 * 109.46564 * 29.99750 * 1 2 3 32 32 H 1.09000 * 109.47477 * 149.99795 * 1 2 3 33 33 H 1.09004 * 109.69187 * 76.73675 * 7 6 2 34 34 H 1.08999 * 109.72157 * 316.17249 * 7 6 2 35 35 H 1.09004 * 109.58965 * 353.42082 * 13 12 10 36 36 H 1.09000 * 109.58586 * 113.84651 * 13 12 10 37 37 H 1.09005 * 109.56127 * 185.55478 * 14 13 12 38 38 H 1.09002 * 109.38355 * 65.51881 * 14 13 12 39 39 H 1.08995 * 109.46457 * 301.22531 * 15 14 13 40 40 H 1.09000 * 109.47019 * 184.94268 * 16 15 14 41 41 H 1.09001 * 109.47219 * 304.94172 * 16 15 14 42 42 H 0.96991 * 120.00005 * 0.02562 * 17 16 15 43 43 H 0.96997 * 119.99680 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.49517 * 178.68202 * 26 15 14 45 45 H 1.09004 * 109.52306 * 58.60014 * 26 15 14 46 46 H 1.08993 * 109.58895 * 246.16064 * 27 12 10 47 47 H 1.09005 * 109.58549 * 6.57956 * 27 12 10 48 48 H 1.09004 * 109.44981 * 190.09801 * 28 8 7 49 49 H 1.09002 * 109.45304 * 310.03156 * 28 8 7 50 50 H 1.08997 * 109.68999 * 316.32433 * 29 5 4 51 51 H 1.08992 * 109.69536 * 76.87040 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0443 0.0000 4 7 3.4658 0.6941 -0.0005 5 6 3.5327 -0.6334 -0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8720 -2.5431 0.0042 8 6 3.1012 -3.3642 0.4155 9 1 3.3138 -3.1956 1.4712 10 6 2.8265 -4.8281 0.1863 11 8 2.0029 -5.1692 -0.6361 12 7 3.4960 -5.7585 0.8953 13 6 4.4254 -5.3614 1.9618 14 6 5.7828 -6.0143 1.7074 15 6 5.5999 -7.5269 1.5636 16 6 6.9625 -8.1858 1.3400 17 7 7.7936 -8.0060 2.5330 18 6 9.0642 -8.5156 2.5654 19 1 9.4538 -9.0497 1.7113 20 6 9.8518 -8.3449 3.6956 21 7 9.3772 -7.6936 4.7363 22 14 11.5854 -9.0394 3.7396 23 1 12.5388 -8.0235 3.2256 24 1 11.9425 -9.3909 5.1375 25 1 11.6529 -10.2560 2.8907 26 6 4.6891 -7.8210 0.3693 27 6 3.3151 -7.1888 0.6123 28 6 4.3083 -2.9348 -0.4227 29 6 4.7468 -1.5244 -0.0068 30 1 -0.3633 0.0000 1.0277 31 1 -0.3632 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.5487 -2.8404 -0.9934 34 1 1.0641 -2.7090 0.7168 35 1 4.5376 -4.2772 1.9637 36 1 4.0386 -5.6926 2.9255 37 1 6.4502 -5.8065 2.5438 38 1 6.2121 -5.6109 0.7903 39 1 5.1482 -7.9260 2.4717 40 1 6.8246 -9.2503 1.1502 41 1 7.4529 -7.7245 0.4827 42 1 7.4435 -7.5267 3.3001 43 1 9.9275 -7.5746 5.5261 44 1 4.5782 -8.8992 0.2533 45 1 5.1281 -7.4009 -0.5357 46 1 2.8359 -7.6720 1.4637 47 1 2.6949 -7.3100 -0.2759 48 1 5.1297 -3.6328 -0.2605 49 1 4.0357 -2.9345 -1.4781 50 1 5.4792 -1.1429 -0.7183 51 1 5.1849 -1.5543 0.9908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206050945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:30 Heat of formation + Delta-G solvation = 39.655325 kcal Electronic energy + Delta-G solvation = -31091.119265 eV Core-core repulsion = 27026.284820 eV Total energy + Delta-G solvation = -4064.834445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.44353 -41.50374 -39.12939 -37.62073 -36.52457 -35.88479 -34.44392 -32.63329 -31.90642 -31.57326 -31.19414 -28.74893 -28.22386 -26.12002 -25.15069 -24.37900 -24.13955 -22.99985 -22.39161 -21.55583 -20.83345 -19.64182 -19.14026 -18.46543 -17.99398 -17.63460 -16.82100 -16.63727 -16.31550 -15.83826 -15.61565 -15.33594 -15.26687 -15.07396 -14.90394 -14.81029 -14.73252 -14.26544 -14.13442 -13.98759 -13.86106 -13.68886 -13.54313 -13.20880 -13.03116 -12.92640 -12.87105 -12.73051 -12.56887 -12.19396 -12.14633 -12.12308 -11.95084 -11.92100 -11.62879 -11.56985 -11.42010 -11.26333 -10.94419 -10.89121 -10.66215 -9.87843 -9.61837 -8.94212 -7.92455 -5.19521 0.53052 1.42395 1.45990 1.49602 1.50225 1.58350 1.58497 2.01010 2.58399 3.09792 3.33707 3.41367 3.63070 3.73516 3.76762 3.80076 3.83347 3.87939 3.95856 4.10392 4.17617 4.21204 4.26885 4.34413 4.41006 4.44756 4.47776 4.53757 4.57539 4.63031 4.66239 4.78158 4.84517 4.87355 4.89091 4.92781 4.98791 5.02989 5.04373 5.13099 5.14527 5.17892 5.23412 5.29746 5.37060 5.51388 5.59885 5.61474 5.64489 6.30954 6.42650 7.14178 7.37925 7.44487 8.15018 8.38750 9.30780 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.002250 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.059641 B =12440.989007 C =13728.835148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.277 5.277 3 N -0.129 5.129 4 N -0.301 5.301 5 C -0.033 4.033 6 C -0.011 4.011 7 C -0.019 4.019 8 C -0.099 4.099 9 H 0.118 0.882 10 C 0.527 3.473 11 O -0.576 6.576 12 N -0.603 5.603 13 C 0.108 3.892 14 C -0.120 4.120 15 C -0.084 4.084 16 C 0.156 3.844 17 N -0.741 5.741 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.073 4.073 21 N -0.966 5.966 22 Si 0.968 3.032 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.272 1.272 26 C -0.116 4.116 27 C 0.116 3.884 28 C -0.102 4.102 29 C -0.028 4.028 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.720 10.890 -9.641 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.069 5.069 3 N -0.106 5.106 4 N -0.164 5.164 5 C -0.174 4.174 6 C -0.147 4.147 7 C -0.059 4.059 8 C -0.120 4.120 9 H 0.136 0.864 10 C 0.316 3.684 11 O -0.456 6.456 12 N -0.335 5.335 13 C -0.014 4.014 14 C -0.159 4.159 15 C -0.103 4.103 16 C 0.030 3.970 17 N -0.384 5.384 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.798 3.202 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.197 1.197 26 C -0.155 4.155 27 C -0.007 4.007 28 C -0.140 4.140 29 C -0.067 4.067 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.109 0.891 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.039 12.213 -10.145 27.163 hybrid contribution 1.007 -1.212 0.547 1.668 sum -21.032 11.001 -9.597 25.603 Atomic orbital electron populations 1.22765 0.70003 1.07705 1.06922 1.47215 1.10703 1.03820 1.45173 1.78497 0.96353 1.12525 1.23259 1.74754 1.10424 1.13480 1.17751 1.22152 0.96489 0.90948 1.07848 1.21973 0.90889 0.92799 1.09009 1.19955 0.97727 0.83511 1.04680 1.21353 0.96826 0.90009 1.03840 0.86393 1.20624 0.79821 0.88273 0.79704 1.90667 1.35540 1.82843 1.36513 1.48189 1.43120 1.06604 1.35567 1.21877 0.88114 1.01436 0.89965 1.21750 0.96813 0.94763 1.02527 1.21189 0.94427 0.95821 0.98868 1.20829 0.90570 0.96689 0.88942 1.42545 1.13046 1.67117 1.15733 1.19596 0.91382 1.27300 0.99257 0.91106 1.25476 1.02246 1.02396 0.96425 1.69787 1.37959 1.48271 1.05679 0.85220 0.80508 0.78149 0.76372 1.21481 1.22240 1.19740 1.21820 0.94501 1.01601 0.97529 1.21598 0.96933 0.79701 1.02443 1.21542 0.96625 0.96031 0.99807 1.20008 0.91896 0.90689 1.04155 0.87016 0.86893 0.85998 0.88470 0.87918 0.87312 0.90173 0.91691 0.91690 0.91437 0.96723 0.96653 0.79071 0.94033 0.89821 0.91813 0.90415 0.89521 0.89096 0.91074 0.89064 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.27 127.77 1.44 1.83 16 2 N -0.28 -4.77 3.73 -356.39 -1.33 -6.10 16 3 N -0.13 -3.20 13.19 37.02 0.49 -2.71 16 4 N -0.30 -8.21 12.40 -48.99 -0.61 -8.82 16 5 C -0.03 -0.71 7.11 41.75 0.30 -0.41 16 6 C -0.01 -0.20 6.76 41.50 0.28 0.08 16 7 C -0.02 -0.26 4.96 29.95 0.15 -0.11 16 8 C -0.10 -1.40 1.66 -11.36 -0.02 -1.42 16 9 H 0.12 1.34 6.27 -2.39 -0.01 1.33 16 10 C 0.53 10.11 6.78 87.66 0.59 10.70 16 11 O -0.58 -14.57 15.32 -3.04 -0.05 -14.61 16 12 N -0.60 -11.25 2.98 -819.75 -2.44 -13.69 16 13 C 0.11 1.89 6.24 86.22 0.54 2.43 16 14 C -0.12 -2.94 5.23 30.53 0.16 -2.78 16 15 C -0.08 -2.28 2.19 -10.77 -0.02 -2.31 16 16 C 0.16 5.79 5.65 86.38 0.49 6.28 16 17 N -0.74 -35.70 5.32 -343.45 -1.83 -37.52 16 18 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 19 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 20 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 21 N -0.97 -57.31 13.06 21.65 0.28 -57.02 16 22 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 C -0.12 -2.49 5.36 30.67 0.16 -2.33 16 27 C 0.12 2.24 6.42 86.36 0.55 2.79 16 28 C -0.10 -1.48 5.02 30.78 0.15 -1.33 16 29 C -0.03 -0.46 6.30 29.97 0.19 -0.27 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 0.20 7.96 -2.39 -0.02 0.19 16 33 H 0.10 1.44 7.51 -2.39 -0.02 1.42 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 1.42 5.34 -2.38 -0.01 1.41 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.96 7.15 -2.38 -0.02 1.94 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.38 18.96 6.84 -92.71 -0.63 18.32 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.09 1.79 7.03 -2.38 -0.02 1.78 16 48 H 0.09 1.28 8.08 -2.38 -0.02 1.26 16 49 H 0.07 1.14 8.12 -2.39 -0.02 1.12 16 50 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -75.34 399.61 3.12 -72.21 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.30 Total: 23.79 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 6.27 Total: -2.88 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -5.43 Total: -125.87 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.05 Total: -14.61 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.34 3.12 -72.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206050945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.869 kcal (2) G-P(sol) polarization free energy of solvation -75.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds