Wall clock time and date at job start Wed Apr 1 2020 04:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47321 * 2 1 4 4 C 1.36748 * 127.13920 * 269.97803 * 3 2 1 5 5 C 1.50697 * 126.34499 * 0.05525 * 4 3 2 6 6 C 1.53002 * 109.47330 * 89.99989 * 5 4 3 7 7 C 1.50698 * 109.47004 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00218 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99741 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00168 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99801 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47421 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47455 * 119.99895 * 11 9 7 14 14 H 1.48504 * 109.47201 * 239.99757 * 11 9 7 15 15 N 1.30287 * 107.30586 * 180.02562 * 4 3 2 16 16 N 1.28530 * 110.05545 * 359.72355 * 15 4 3 17 17 C 1.31223 * 109.85968 * 0.45372 * 16 15 4 18 18 N 1.38570 * 126.47333 * 179.81780 * 17 16 15 19 19 C 1.48562 * 110.99849 * 119.81900 * 18 17 16 20 20 C 1.54379 * 104.59486 * 200.96079 * 19 18 17 21 21 C 1.54266 * 105.05973 * 23.85004 * 20 19 18 22 22 H 1.09005 * 110.32054 * 118.89995 * 21 20 19 23 23 N 1.46504 * 110.32417 * 241.10452 * 21 20 19 24 24 C 1.46761 * 124.34829 * 238.27822 * 23 21 20 25 25 C 1.54660 * 105.38305 * 162.85475 * 24 23 21 26 26 C 1.54634 * 101.68371 * 25.76094 * 25 24 23 27 27 C 1.34416 * 124.34694 * 58.57109 * 23 21 20 28 28 O 1.21279 * 124.94530 * 0.38855 * 27 23 21 29 29 C 1.48562 * 111.00100 * 4.39757 * 18 17 16 30 30 H 1.09007 * 109.46944 * 59.99850 * 1 2 3 31 31 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46989 * 300.00061 * 1 2 3 33 33 H 1.09004 * 109.46989 * 239.99939 * 2 1 3 34 34 H 1.09000 * 109.47225 * 120.00390 * 2 1 3 35 35 H 1.09004 * 109.47045 * 210.00270 * 5 4 3 36 36 H 1.09005 * 109.46995 * 330.00025 * 5 4 3 37 37 H 1.09004 * 109.46837 * 299.99844 * 6 5 4 38 38 H 1.08997 * 109.46759 * 60.00074 * 6 5 4 39 39 H 0.96995 * 119.99793 * 180.02562 * 10 9 7 40 40 H 1.08998 * 110.41528 * 82.17878 * 19 18 17 41 41 H 1.08999 * 110.41058 * 319.73640 * 19 18 17 42 42 H 1.08996 * 110.32596 * 264.95760 * 20 19 18 43 43 H 1.09000 * 110.41377 * 142.79352 * 20 19 18 44 44 H 1.09000 * 110.24299 * 281.97755 * 24 23 21 45 45 H 1.08998 * 110.25095 * 43.98124 * 24 23 21 46 46 H 1.08996 * 111.19097 * 267.58974 * 25 24 23 47 47 H 1.09000 * 110.85369 * 143.78540 * 25 24 23 48 48 H 1.08995 * 110.48086 * 216.31018 * 26 25 24 49 49 H 1.08997 * 110.48195 * 93.66729 * 26 25 24 50 50 H 1.09000 * 110.41111 * 40.26347 * 29 18 17 51 51 H 1.08989 * 110.41482 * 277.81612 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2940 2.1594 -1.0901 5 6 2.1506 1.7557 -2.5349 6 6 0.7425 2.1010 -3.0236 7 6 0.5990 1.6967 -4.4683 8 1 1.4292 1.2396 -4.9862 9 6 -0.5920 1.9113 -5.1291 10 7 -1.6028 2.4684 -4.4986 11 14 -0.7697 1.4109 -6.9200 12 1 0.5029 0.8106 -7.3949 13 1 -1.8652 0.4168 -7.0499 14 1 -1.0878 2.6079 -7.7393 15 7 2.7030 3.3148 -0.6481 16 7 2.6990 3.3215 0.6372 17 6 2.2931 2.1578 1.0878 18 7 2.1624 1.7892 2.4172 19 6 0.7586 1.4183 2.7314 20 6 0.6512 1.5650 4.2644 21 6 1.7623 2.5632 4.6503 22 1 1.3301 3.4497 5.1147 23 7 2.7231 1.9297 5.5569 24 6 3.0417 2.4228 6.9020 25 6 3.7295 1.2387 7.6208 26 6 4.3141 0.4458 6.4289 27 6 3.4302 0.8254 5.2614 28 8 3.3682 0.2211 4.2118 29 6 2.4474 2.9357 3.3180 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.8854 2.2910 -3.1364 36 1 2.3154 0.6824 -2.6303 37 1 0.0077 1.5657 -2.4222 38 1 0.5778 3.1742 -2.9282 39 1 -2.4407 2.6190 -4.9634 40 1 0.5616 0.3886 2.4333 41 1 0.0657 2.0978 2.2351 42 1 0.8208 0.6038 4.7495 43 1 -0.3260 1.9607 4.5410 44 1 3.7186 3.2750 6.8407 45 1 2.1286 2.7025 7.4274 46 1 3.0057 0.6380 8.1715 47 1 4.5220 1.5926 8.2802 48 1 4.2561 -0.6260 6.6187 49 1 5.3449 0.7456 6.2403 50 1 2.0188 3.8527 2.9135 51 1 3.5219 3.0484 3.4617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263041955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:53 Heat of formation + Delta-G solvation = 62.282547 kcal Electronic energy + Delta-G solvation = -31809.991396 eV Core-core repulsion = 27746.138141 eV Total energy + Delta-G solvation = -4063.853255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.51125 -40.85206 -38.50178 -36.43238 -35.46838 -34.16143 -33.24039 -31.66546 -30.80836 -30.02469 -28.49449 -27.91586 -27.78620 -25.22089 -23.77041 -23.14707 -22.27731 -22.18012 -21.51295 -20.34973 -19.58354 -18.86609 -17.47378 -17.16363 -16.72819 -16.44891 -16.05834 -15.52733 -15.20081 -15.06351 -14.48839 -14.29669 -14.11746 -14.00767 -13.78867 -13.58341 -13.31459 -13.06633 -12.98256 -12.77111 -12.74970 -12.34732 -12.18445 -12.09868 -11.99864 -11.84480 -11.61511 -11.37708 -11.25586 -11.23889 -11.07566 -10.96346 -10.89814 -10.62654 -10.15035 -9.95647 -9.83195 -9.71539 -9.65782 -9.25148 -9.14032 -8.90383 -8.38846 -7.77616 -6.03948 -4.07249 2.25002 2.52157 2.68347 2.71733 3.29679 3.36751 3.38320 3.42329 3.89367 4.02616 4.09504 4.29535 4.35589 4.42932 4.43629 4.67151 4.81395 4.83124 4.94387 5.06641 5.08264 5.13378 5.16795 5.19919 5.30136 5.32031 5.33239 5.37067 5.40367 5.44270 5.47630 5.56545 5.59654 5.70401 5.75241 5.80117 5.82798 5.93980 6.22734 6.36116 6.41662 6.46752 6.56874 6.69158 6.76430 6.96180 7.05548 7.58391 7.61777 7.73696 7.94742 8.11960 8.32659 8.99082 9.34005 9.57019 11.07183 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.002304 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.020697 B =12150.641316 C =12258.072982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.108 3.892 3 N -0.475 5.475 4 C 0.210 3.790 5 C -0.030 4.030 6 C 0.032 3.968 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 N -0.298 5.298 16 N -0.330 5.330 17 C 0.330 3.670 18 N -0.400 5.400 19 C 0.035 3.965 20 C -0.129 4.129 21 C 0.153 3.847 22 H 0.104 0.896 23 N -0.619 5.619 24 C 0.102 3.898 25 C -0.131 4.131 26 C -0.158 4.158 27 C 0.508 3.492 28 O -0.490 6.490 29 C 0.047 3.953 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.017 0.983 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.077 0.923 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 -4.542 28.506 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.015 4.015 3 N -0.170 5.170 4 C -0.058 4.058 5 C -0.070 4.070 6 C -0.007 4.007 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.210 1.210 15 N -0.136 5.136 16 N -0.174 5.174 17 C -0.027 4.027 18 N -0.123 5.123 19 C -0.092 4.092 20 C -0.167 4.167 21 C 0.050 3.950 22 H 0.122 0.878 23 N -0.356 5.356 24 C -0.021 4.021 25 C -0.169 4.169 26 C -0.198 4.198 27 C 0.294 3.706 28 O -0.362 6.362 29 C -0.082 4.082 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.095 0.905 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.001 -3.830 27.952 29.068 hybrid contribution -1.137 -0.950 -0.984 1.778 sum 5.864 -4.779 26.967 28.008 Atomic orbital electron populations 1.22442 0.93851 1.03395 1.04276 1.21824 0.95874 0.79168 1.04639 1.46239 1.51315 1.13815 1.05630 1.25486 0.99775 0.88126 0.92397 1.20409 1.03316 1.00495 0.82801 1.19115 0.87935 0.97755 0.95848 1.21195 0.98295 1.40379 0.96069 0.92282 1.25008 0.95924 0.95126 0.98246 1.69981 1.03264 1.43269 1.36654 0.86513 0.78082 0.78248 0.85028 1.19627 1.21063 1.20961 1.73946 1.19861 1.17756 1.02025 1.74445 1.23537 1.15287 1.04165 1.22742 1.03924 0.88472 0.87592 1.62191 1.21443 1.31960 0.96680 1.23409 0.87686 1.02389 0.95715 1.22693 0.98279 1.00561 0.95217 1.21714 0.88309 0.95472 0.89550 0.87775 1.48397 1.42448 1.28458 1.16248 1.22101 1.00412 0.97095 0.82463 1.22600 1.00739 0.96502 0.97053 1.22362 1.00547 1.02571 0.94329 1.20849 0.80698 0.80458 0.88599 1.90854 1.65010 1.54289 1.26019 1.23357 1.02536 0.92025 0.90238 0.89897 0.90563 0.92120 0.88521 0.88847 0.89468 0.91385 0.96456 0.95757 0.92988 0.88862 0.92709 0.89952 0.90015 0.91132 0.90535 0.90110 0.89385 0.88390 0.88128 0.90487 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 9.82 37.16 0.37 -2.22 16 2 C 0.11 1.61 5.89 -4.04 -0.02 1.58 16 3 N -0.48 -8.82 2.81 -114.09 -0.32 -9.14 16 4 C 0.21 4.48 7.32 -154.01 -1.13 3.35 16 5 C -0.03 -0.65 5.53 -27.88 -0.15 -0.81 16 6 C 0.03 0.81 4.96 -27.88 -0.14 0.68 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 11 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 N -0.30 -6.89 12.18 32.99 0.40 -6.49 16 16 N -0.33 -7.03 11.03 30.31 0.33 -6.70 16 17 C 0.33 6.15 7.05 -318.88 -2.25 3.90 16 18 N -0.40 -6.05 3.74 -170.10 -0.64 -6.68 16 19 C 0.04 0.44 4.67 -2.18 -0.01 0.43 16 20 C -0.13 -1.19 6.19 -25.35 -0.16 -1.35 16 21 C 0.15 1.37 3.74 -66.54 -0.25 1.12 16 22 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 23 N -0.62 -5.07 2.81 -163.16 -0.46 -5.53 16 24 C 0.10 0.46 7.33 -3.03 -0.02 0.44 16 25 C -0.13 -0.46 7.19 -25.00 -0.18 -0.64 16 26 C -0.16 -0.99 6.86 -26.74 -0.18 -1.17 16 27 C 0.51 5.28 7.10 -10.86 -0.08 5.20 16 28 O -0.49 -7.28 15.18 5.56 0.08 -7.19 16 29 C 0.05 0.60 5.21 -2.18 -0.01 0.59 16 30 H 0.08 1.48 6.24 -51.93 -0.32 1.15 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.81 5.07 -51.93 -0.26 0.55 16 33 H 0.10 1.37 7.25 -51.93 -0.38 1.00 16 34 H 0.09 1.28 7.74 -51.93 -0.40 0.88 16 35 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 36 H 0.07 1.32 7.27 -51.93 -0.38 0.94 16 37 H 0.02 0.46 6.24 -51.93 -0.32 0.14 16 38 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.09 1.15 5.64 -51.93 -0.29 0.85 16 41 H 0.05 0.73 7.65 -51.93 -0.40 0.34 16 42 H 0.08 0.82 7.35 -51.93 -0.38 0.44 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.08 1.05 7.50 -51.93 -0.39 0.66 16 51 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -36.23 396.86 -11.66 -47.89 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.13 Total: -0.61 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -4.63 Total: -2.08 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.06 Total: -60.41 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.08 Total: -7.19 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.23 -11.66 -47.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263041955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.171 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds