Wall clock time and date at job start Wed Apr 1 2020 04:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47415 * 2 1 4 4 C 1.36738 * 127.13416 * 90.02335 * 3 2 1 5 5 C 1.50697 * 126.34894 * 0.02562 * 4 3 2 6 6 C 1.52997 * 109.47466 * 269.71347 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 N 1.30297 * 107.30223 * 179.75880 * 4 3 2 16 16 N 1.28519 * 110.05683 * 0.24391 * 15 4 3 17 17 C 1.31224 * 109.86001 * 359.97438 * 16 15 4 18 18 N 1.38579 * 126.47141 * 180.02562 * 17 16 15 19 19 C 1.48535 * 110.99632 * 242.62690 * 18 17 16 20 20 C 1.54936 * 103.23073 * 159.72110 * 19 18 17 21 21 C 1.54597 * 102.91917 * 322.58794 * 20 19 18 22 22 H 1.09001 * 110.30766 * 263.04153 * 21 20 19 23 23 N 1.46494 * 110.31304 * 140.87085 * 21 20 19 24 24 C 1.46762 * 124.35200 * 124.00610 * 23 21 20 25 25 C 1.54663 * 105.38492 * 162.85905 * 24 23 21 26 26 C 1.54632 * 101.68291 * 25.76471 * 25 24 23 27 27 C 1.34423 * 124.35152 * 304.31118 * 23 21 20 28 28 O 1.21281 * 124.93849 * 0.42469 * 27 23 21 29 29 C 1.47899 * 111.00183 * 0.02562 * 18 17 16 30 30 H 1.08992 * 109.47244 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46788 * 300.00116 * 1 2 3 32 32 H 1.08997 * 109.47163 * 59.99422 * 1 2 3 33 33 H 1.09003 * 109.47441 * 240.00198 * 2 1 3 34 34 H 1.09002 * 109.47454 * 120.00183 * 2 1 3 35 35 H 1.09002 * 109.47120 * 149.71100 * 5 4 3 36 36 H 1.08998 * 109.46862 * 29.71902 * 5 4 3 37 37 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 38 38 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 39 39 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 40 40 H 1.09002 * 110.66688 * 278.15804 * 19 18 17 41 41 H 1.09004 * 110.66941 * 41.28300 * 19 18 17 42 42 H 1.08997 * 110.72954 * 204.22936 * 20 19 18 43 43 H 1.09005 * 110.72454 * 80.93890 * 20 19 18 44 44 H 1.09004 * 110.24610 * 281.98711 * 24 23 21 45 45 H 1.08999 * 110.24620 * 43.98244 * 24 23 21 46 46 H 1.08999 * 111.18896 * 267.59336 * 25 24 23 47 47 H 1.08999 * 110.85727 * 143.79474 * 25 24 23 48 48 H 1.08999 * 110.48683 * 216.31100 * 26 25 24 49 49 H 1.09000 * 110.59635 * 93.72387 * 26 25 24 50 50 H 1.08998 * 109.92067 * 333.51190 * 29 18 17 51 51 H 1.09000 * 109.91763 * 94.81132 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2940 2.1593 1.0901 5 6 2.1522 1.7550 2.5349 6 6 0.7465 2.1051 3.0269 7 6 0.6046 1.7002 4.4716 8 1 1.4342 1.2396 4.9873 9 6 -0.5841 1.9186 5.1352 10 7 -0.7077 1.5657 6.3960 11 14 -2.0188 2.7159 4.2433 12 1 -2.8534 1.6640 3.6090 13 1 -2.8412 3.4816 5.2141 14 1 -1.5025 3.6356 3.1980 15 7 2.7074 3.3132 0.6481 16 7 2.7068 3.3187 -0.6371 17 6 2.2901 2.1589 -1.0878 18 7 2.1563 1.7915 -2.4173 19 6 0.7395 1.4904 -2.7462 20 6 0.6968 1.6273 -4.2889 21 6 1.6440 2.8194 -4.5564 22 1 1.0714 3.7406 -4.6650 23 7 2.4451 2.5728 -5.7579 24 6 2.4949 3.4697 -6.9185 25 6 3.7573 3.0501 -7.7075 26 6 3.9118 1.5701 -7.2869 27 6 3.2244 1.4931 -5.9415 28 8 3.3569 0.5885 -5.1446 29 6 2.5524 2.8979 -3.3153 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.8903 2.2870 3.1352 36 1 2.3133 0.6811 2.6291 37 1 0.0084 1.5730 2.4267 38 1 0.5855 3.1790 2.9327 39 1 -1.5441 1.7191 6.8628 40 1 0.4814 0.4758 -2.4427 41 1 0.0733 2.2145 -2.2771 42 1 -0.3139 1.8540 -4.6283 43 1 1.0715 0.7222 -4.7670 44 1 1.6033 3.3420 -7.5325 45 1 2.5830 4.5056 -6.5912 46 1 4.6250 3.6349 -7.4024 47 1 3.5900 3.1351 -8.7812 48 1 4.9657 1.3084 -7.1924 49 1 3.4196 0.9140 -8.0048 50 1 2.4109 3.8540 -2.8115 51 1 3.5952 2.7814 -3.6104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263041956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:58 Heat of formation + Delta-G solvation = 62.906917 kcal Electronic energy + Delta-G solvation = -31630.865602 eV Core-core repulsion = 27567.039421 eV Total energy + Delta-G solvation = -4063.826180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.69533 -40.99020 -38.68638 -36.60647 -35.64445 -34.30217 -33.35825 -31.85316 -30.95019 -30.24933 -28.64495 -28.19477 -27.90814 -25.48580 -23.94540 -23.19203 -22.38677 -22.26372 -21.36126 -20.46810 -19.71348 -19.08769 -17.60876 -17.30320 -16.95767 -16.80585 -16.16673 -15.63889 -15.44710 -15.21155 -14.48940 -14.32293 -14.24064 -14.11746 -13.76348 -13.68826 -13.40529 -13.27476 -13.22635 -12.96447 -12.90213 -12.67089 -12.44563 -12.27418 -12.09938 -11.94818 -11.77863 -11.58142 -11.45929 -11.40447 -11.23833 -11.05276 -11.00167 -10.42911 -10.28905 -10.06299 -9.88924 -9.87640 -9.79893 -9.36654 -9.28206 -9.05108 -8.59174 -7.98080 -6.09999 -4.08915 2.06870 2.31978 2.47880 2.61420 3.20622 3.25140 3.34799 3.40308 3.72841 3.92661 4.01196 4.21276 4.24842 4.36645 4.40326 4.54396 4.67954 4.72282 4.83439 4.92598 4.98330 5.00566 5.02231 5.05204 5.15215 5.23144 5.23768 5.24887 5.31453 5.35711 5.42551 5.48055 5.49930 5.57161 5.61218 5.66318 5.75132 5.81485 6.07164 6.19865 6.25670 6.29856 6.37028 6.51231 6.54759 6.80365 6.87506 7.16120 7.29750 7.41241 7.69842 7.92609 8.44858 8.93798 9.16070 9.51740 11.02988 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.002401 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.134850 B =11656.712448 C =11769.839155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 N -0.475 5.475 4 C 0.206 3.794 5 C -0.021 4.021 6 C -0.003 4.003 7 C -0.521 4.521 8 H 0.076 0.924 9 C 0.071 3.929 10 N -0.899 5.899 11 Si 0.875 3.125 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.265 1.265 15 N -0.294 5.294 16 N -0.327 5.327 17 C 0.330 3.670 18 N -0.418 5.418 19 C 0.037 3.963 20 C -0.132 4.132 21 C 0.148 3.852 22 H 0.103 0.897 23 N -0.617 5.617 24 C 0.101 3.899 25 C -0.132 4.132 26 C -0.157 4.157 27 C 0.512 3.488 28 O -0.507 6.507 29 C 0.046 3.954 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.010 0.990 38 H 0.024 0.976 39 H 0.264 0.736 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.084 0.916 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 -0.182 -32.387 32.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.017 4.017 3 N -0.170 5.170 4 C -0.061 4.061 5 C -0.061 4.061 6 C -0.042 4.042 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.131 4.131 10 N -0.538 5.538 11 Si 0.702 3.298 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.190 1.190 15 N -0.133 5.133 16 N -0.172 5.172 17 C -0.027 4.027 18 N -0.142 5.142 19 C -0.091 4.091 20 C -0.171 4.171 21 C 0.045 3.955 22 H 0.121 0.879 23 N -0.352 5.352 24 C -0.022 4.022 25 C -0.170 4.170 26 C -0.197 4.197 27 C 0.299 3.701 28 O -0.381 6.381 29 C -0.082 4.082 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.029 0.971 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.102 0.898 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.510 0.295 -31.827 32.146 hybrid contribution -1.771 -0.301 -0.300 1.821 sum 2.739 -0.006 -32.126 32.243 Atomic orbital electron populations 1.22435 0.94009 1.03664 1.03906 1.21861 0.95785 0.79066 1.04988 1.46266 1.51298 1.13782 1.05620 1.25532 0.99998 0.88174 0.92431 1.20206 1.02140 1.01169 0.82608 1.19582 0.90241 0.97276 0.97092 1.21020 1.00214 1.40734 0.93939 0.90605 1.24961 0.98491 0.94959 0.94679 1.69899 1.26409 1.47705 1.09741 0.86851 0.82736 0.80165 0.80061 1.20346 1.21174 1.18953 1.73975 1.19509 1.17783 1.01996 1.74414 1.23146 1.15466 1.04161 1.22633 1.03964 0.88498 0.87567 1.61431 1.19519 1.36551 0.96708 1.23535 0.87226 1.02610 0.95692 1.22892 0.99351 0.99677 0.95138 1.21840 0.91103 0.99050 0.83533 0.87916 1.48374 1.46331 1.23324 1.17195 1.22147 0.98596 0.94606 0.86836 1.22619 0.98001 0.95377 1.00961 1.22356 1.03148 0.98228 0.96002 1.20901 0.79165 0.81544 0.88513 1.90810 1.62917 1.35506 1.48872 1.23148 1.00660 0.93245 0.91132 0.90187 0.90388 0.92047 0.88713 0.88124 0.88772 0.90712 0.97138 0.95755 0.92621 0.88572 0.92465 0.90008 0.88885 0.91042 0.90222 0.89845 0.89221 0.88126 0.87993 0.89794 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.89 37.16 0.37 -1.91 16 2 C 0.11 1.41 5.96 -4.04 -0.02 1.39 16 3 N -0.47 -8.11 2.81 -114.08 -0.32 -8.43 16 4 C 0.21 4.09 7.32 -154.02 -1.13 2.96 16 5 C -0.02 -0.43 5.53 -27.89 -0.15 -0.59 16 6 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 7 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 11 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 15 N -0.29 -6.38 12.18 32.99 0.40 -5.98 16 16 N -0.33 -6.53 10.70 30.31 0.32 -6.21 16 17 C 0.33 5.72 7.03 -318.87 -2.24 3.48 16 18 N -0.42 -5.94 5.32 -170.54 -0.91 -6.85 16 19 C 0.04 0.41 4.89 -1.90 -0.01 0.40 16 20 C -0.13 -1.19 6.49 -24.87 -0.16 -1.35 16 21 C 0.15 1.31 3.65 -66.57 -0.24 1.07 16 22 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 23 N -0.62 -4.78 2.85 -163.19 -0.46 -5.25 16 24 C 0.10 0.42 7.33 -3.02 -0.02 0.39 16 25 C -0.13 -0.42 7.19 -25.00 -0.18 -0.60 16 26 C -0.16 -0.86 6.86 -26.74 -0.18 -1.05 16 27 C 0.51 4.95 6.89 -10.86 -0.07 4.88 16 28 O -0.51 -7.16 15.97 5.56 0.09 -7.07 16 29 C 0.05 0.58 5.70 -2.75 -0.02 0.56 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.20 6.27 -51.93 -0.33 0.88 16 32 H 0.06 0.71 5.17 -51.93 -0.27 0.44 16 33 H 0.09 1.13 7.96 -51.93 -0.41 0.72 16 34 H 0.10 1.28 7.25 -51.93 -0.38 0.90 16 35 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 36 H 0.07 1.37 7.26 -51.93 -0.38 0.99 16 37 H 0.01 0.24 5.70 -51.93 -0.30 -0.06 16 38 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.10 1.03 5.71 -51.93 -0.30 0.73 16 41 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.99 6.40 -51.93 -0.33 0.66 16 44 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.08 1.14 6.84 -51.93 -0.36 0.78 16 51 H 0.09 1.24 7.47 -51.93 -0.39 0.85 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -36.29 394.67 -11.46 -47.75 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.02 Total: -1.00 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -4.61 Total: -3.37 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.19 Total: -59.19 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.29 -11.46 -47.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263041956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.657 kcal (2) G-P(sol) polarization free energy of solvation -36.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds