Wall clock time and date at job start Wed Apr 1 2020 04:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47415 * 2 1 4 4 C 1.36738 * 127.13416 * 90.02335 * 3 2 1 5 5 C 1.50697 * 126.34894 * 0.02562 * 4 3 2 6 6 C 1.52997 * 109.47466 * 269.71347 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 N 1.30297 * 107.30223 * 179.75880 * 4 3 2 16 16 N 1.28519 * 110.05683 * 0.24391 * 15 4 3 17 17 C 1.31224 * 109.86001 * 359.97438 * 16 15 4 18 18 N 1.38579 * 126.47141 * 180.02562 * 17 16 15 19 19 C 1.48535 * 110.99632 * 242.62690 * 18 17 16 20 20 C 1.54936 * 103.23073 * 159.72110 * 19 18 17 21 21 C 1.54597 * 102.91917 * 322.58794 * 20 19 18 22 22 H 1.09001 * 110.30766 * 263.04153 * 21 20 19 23 23 N 1.46494 * 110.31304 * 140.87085 * 21 20 19 24 24 C 1.46762 * 124.35200 * 124.00610 * 23 21 20 25 25 C 1.54663 * 105.38492 * 162.85905 * 24 23 21 26 26 C 1.54632 * 101.68291 * 25.76471 * 25 24 23 27 27 C 1.34423 * 124.35152 * 304.31118 * 23 21 20 28 28 O 1.21281 * 124.93849 * 0.42469 * 27 23 21 29 29 C 1.47899 * 111.00183 * 0.02562 * 18 17 16 30 30 H 1.08992 * 109.47244 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46788 * 300.00116 * 1 2 3 32 32 H 1.08997 * 109.47163 * 59.99422 * 1 2 3 33 33 H 1.09003 * 109.47441 * 240.00198 * 2 1 3 34 34 H 1.09002 * 109.47454 * 120.00183 * 2 1 3 35 35 H 1.09002 * 109.47120 * 149.71100 * 5 4 3 36 36 H 1.08998 * 109.46862 * 29.71902 * 5 4 3 37 37 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 38 38 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 39 39 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 40 40 H 1.09002 * 110.66688 * 278.15804 * 19 18 17 41 41 H 1.09004 * 110.66941 * 41.28300 * 19 18 17 42 42 H 1.08997 * 110.72954 * 204.22936 * 20 19 18 43 43 H 1.09005 * 110.72454 * 80.93890 * 20 19 18 44 44 H 1.09004 * 110.24610 * 281.98711 * 24 23 21 45 45 H 1.08999 * 110.24620 * 43.98244 * 24 23 21 46 46 H 1.08999 * 111.18896 * 267.59336 * 25 24 23 47 47 H 1.08999 * 110.85727 * 143.79474 * 25 24 23 48 48 H 1.08999 * 110.48683 * 216.31100 * 26 25 24 49 49 H 1.09000 * 110.59635 * 93.72387 * 26 25 24 50 50 H 1.08998 * 109.92067 * 333.51190 * 29 18 17 51 51 H 1.09000 * 109.91763 * 94.81132 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2940 2.1593 1.0901 5 6 2.1522 1.7550 2.5349 6 6 0.7465 2.1051 3.0269 7 6 0.6046 1.7002 4.4716 8 1 1.4342 1.2396 4.9873 9 6 -0.5841 1.9186 5.1352 10 7 -0.7077 1.5657 6.3960 11 14 -2.0188 2.7159 4.2433 12 1 -2.8534 1.6640 3.6090 13 1 -2.8412 3.4816 5.2141 14 1 -1.5025 3.6356 3.1980 15 7 2.7074 3.3132 0.6481 16 7 2.7068 3.3187 -0.6371 17 6 2.2901 2.1589 -1.0878 18 7 2.1563 1.7915 -2.4173 19 6 0.7395 1.4904 -2.7462 20 6 0.6968 1.6273 -4.2889 21 6 1.6440 2.8194 -4.5564 22 1 1.0714 3.7406 -4.6650 23 7 2.4451 2.5728 -5.7579 24 6 2.4949 3.4697 -6.9185 25 6 3.7573 3.0501 -7.7075 26 6 3.9118 1.5701 -7.2869 27 6 3.2244 1.4931 -5.9415 28 8 3.3569 0.5885 -5.1446 29 6 2.5524 2.8979 -3.3153 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.8903 2.2870 3.1352 36 1 2.3133 0.6811 2.6291 37 1 0.0084 1.5730 2.4267 38 1 0.5855 3.1790 2.9327 39 1 -1.5441 1.7191 6.8628 40 1 0.4814 0.4758 -2.4427 41 1 0.0733 2.2145 -2.2771 42 1 -0.3139 1.8540 -4.6283 43 1 1.0715 0.7222 -4.7670 44 1 1.6033 3.3420 -7.5325 45 1 2.5830 4.5056 -6.5912 46 1 4.6250 3.6349 -7.4024 47 1 3.5900 3.1351 -8.7812 48 1 4.9657 1.3084 -7.1924 49 1 3.4196 0.9140 -8.0048 50 1 2.4109 3.8540 -2.8115 51 1 3.5952 2.7814 -3.6104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263041956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:57 Heat of formation + Delta-G solvation = 40.715977 kcal Electronic energy + Delta-G solvation = -31631.827873 eV Core-core repulsion = 27567.039421 eV Total energy + Delta-G solvation = -4064.788452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.10566 -41.67110 -39.61570 -37.29354 -36.97738 -35.96594 -34.51730 -33.57332 -31.93216 -31.46376 -29.87856 -29.25414 -28.35993 -27.28593 -25.10566 -24.20576 -23.51139 -22.82500 -22.70462 -21.71059 -21.15736 -19.82813 -19.11991 -18.56971 -18.02644 -17.59504 -17.21866 -16.98037 -16.38497 -16.24115 -16.05369 -15.56084 -15.23699 -15.07974 -14.89577 -14.73411 -14.68154 -14.37150 -14.13546 -14.05887 -13.87298 -13.70039 -13.61018 -13.29967 -13.22886 -13.00010 -12.83035 -12.66898 -12.50539 -12.37634 -12.31868 -12.17529 -12.01945 -11.93262 -11.78511 -11.75301 -11.58211 -11.41181 -11.21215 -10.78541 -10.74395 -10.58268 -9.67194 -9.34457 -8.31134 -6.34898 0.70069 1.20393 1.29739 1.35034 1.45765 1.64780 1.72082 2.00525 2.32721 2.60292 3.03757 3.28205 3.34493 3.46411 3.54465 3.61318 3.69560 3.88319 3.96081 3.98074 4.05772 4.08813 4.11603 4.16160 4.24880 4.30219 4.37435 4.47797 4.52288 4.59124 4.63055 4.70184 4.71802 4.73784 4.76091 4.80224 4.89387 4.93499 4.96343 5.02745 5.07163 5.12976 5.26594 5.31673 5.37935 5.45065 5.47506 5.60694 5.68517 6.12056 6.21800 6.23452 6.71656 7.25630 7.29221 7.68930 8.84929 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.002401 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.134850 B =11656.712448 C =11769.839155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 N -0.472 5.472 4 C 0.196 3.804 5 C -0.010 4.010 6 C 0.007 3.993 7 C -0.526 4.526 8 H 0.046 0.954 9 C 0.014 3.986 10 N -0.943 5.943 11 Si 0.939 3.061 12 H -0.258 1.258 13 H -0.283 1.283 14 H -0.262 1.262 15 N -0.328 5.328 16 N -0.358 5.358 17 C 0.345 3.655 18 N -0.426 5.426 19 C 0.035 3.965 20 C -0.120 4.120 21 C 0.152 3.848 22 H 0.132 0.868 23 N -0.615 5.615 24 C 0.096 3.904 25 C -0.122 4.122 26 C -0.153 4.153 27 C 0.498 3.502 28 O -0.563 6.563 29 C 0.048 3.952 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.024 0.976 38 H 0.008 0.992 39 H 0.267 0.733 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.118 0.882 48 H 0.097 0.903 49 H 0.118 0.882 50 H 0.071 0.929 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -0.084 -36.345 36.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.023 4.023 3 N -0.167 5.167 4 C -0.073 4.073 5 C -0.050 4.050 6 C -0.031 4.031 7 C -0.564 4.564 8 H 0.064 0.936 9 C -0.184 4.184 10 N -0.583 5.583 11 Si 0.763 3.237 12 H -0.183 1.183 13 H -0.208 1.208 14 H -0.187 1.187 15 N -0.166 5.166 16 N -0.202 5.202 17 C -0.012 4.012 18 N -0.150 5.150 19 C -0.092 4.092 20 C -0.158 4.158 21 C 0.048 3.952 22 H 0.150 0.850 23 N -0.349 5.349 24 C -0.026 4.026 25 C -0.159 4.159 26 C -0.193 4.193 27 C 0.287 3.713 28 O -0.441 6.441 29 C -0.080 4.080 30 H 0.127 0.873 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.042 0.958 38 H 0.026 0.974 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.136 0.864 48 H 0.116 0.884 49 H 0.136 0.864 50 H 0.089 0.911 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.793 0.406 -35.838 35.949 hybrid contribution -1.136 -0.383 0.872 1.483 sum 1.656 0.024 -34.966 35.005 Atomic orbital electron populations 1.22408 0.92951 1.05227 1.02814 1.22192 0.96632 0.77270 1.06168 1.46423 1.50805 1.14743 1.04703 1.25205 1.01020 0.88482 0.92631 1.19952 0.99834 1.02129 0.83067 1.19399 0.92746 0.96116 0.94859 1.21282 0.99291 1.39959 0.95833 0.93613 1.25816 1.01515 0.95641 0.95385 1.70032 1.27460 1.49387 1.11455 0.85821 0.79365 0.79597 0.78880 1.18307 1.20844 1.18686 1.73876 1.20531 1.19078 1.03113 1.74340 1.25176 1.17162 1.03539 1.22986 1.01760 0.87714 0.88757 1.61533 1.21549 1.36845 0.95109 1.23655 0.85116 1.02862 0.97518 1.22851 1.00977 0.99020 0.92996 1.21853 0.90482 1.00350 0.82509 0.85016 1.48508 1.45347 1.23389 1.17608 1.22457 0.99994 0.94385 0.85747 1.22658 0.97571 0.93229 1.02469 1.22382 1.02580 1.00429 0.93897 1.21678 0.79135 0.81102 0.89421 1.90767 1.64811 1.37648 1.50921 1.23144 1.00483 0.91979 0.92418 0.87319 0.93257 0.91158 0.87027 0.87473 0.89627 0.88950 0.95783 0.97408 0.92369 0.87846 0.92643 0.86817 0.90401 0.88850 0.89094 0.89923 0.86413 0.88412 0.86408 0.91114 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 9.89 71.98 0.71 -3.31 16 2 C 0.10 2.48 5.96 86.38 0.52 3.00 16 3 N -0.47 -15.89 2.81 -514.85 -1.45 -17.34 16 4 C 0.20 7.82 7.32 137.64 1.01 8.83 16 5 C -0.01 -0.41 5.53 29.85 0.16 -0.25 16 6 C 0.01 0.35 4.02 29.85 0.12 0.47 16 7 C -0.53 -29.65 9.66 25.60 0.25 -29.40 16 8 H 0.05 2.78 7.99 -2.91 -0.02 2.76 16 9 C 0.01 0.82 5.47 84.66 0.46 1.29 16 10 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 11 Si 0.94 44.41 27.47 68.60 1.88 46.30 16 12 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16 15 N -0.33 -14.50 12.18 -49.54 -0.60 -15.10 16 16 N -0.36 -14.53 10.70 -58.00 -0.62 -15.15 16 17 C 0.35 11.92 7.03 260.11 1.83 13.75 16 18 N -0.43 -11.85 5.32 -693.47 -3.69 -15.54 16 19 C 0.03 0.72 4.89 86.65 0.42 1.15 16 20 C -0.12 -1.85 6.49 31.80 0.21 -1.65 16 21 C 0.15 2.36 3.65 45.88 0.17 2.53 16 22 H 0.13 1.31 8.10 -2.39 -0.02 1.29 16 23 N -0.61 -8.20 2.85 -788.80 -2.25 -10.45 16 24 C 0.10 0.45 7.33 86.90 0.64 1.08 16 25 C -0.12 -0.37 7.19 31.72 0.23 -0.14 16 26 C -0.15 -1.37 6.86 30.59 0.21 -1.16 16 27 C 0.50 9.13 6.89 87.89 0.61 9.73 16 28 O -0.56 -16.03 15.97 -3.03 -0.05 -16.08 16 29 C 0.05 1.18 5.70 86.45 0.49 1.67 16 30 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.43 6.27 -2.39 -0.01 1.41 16 32 H 0.07 1.46 5.17 -2.39 -0.01 1.45 16 33 H 0.11 2.45 7.96 -2.39 -0.02 2.44 16 34 H 0.11 2.57 7.25 -2.39 -0.02 2.55 16 35 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.09 3.39 7.26 -2.39 -0.02 3.37 16 37 H 0.02 1.08 5.70 -2.39 -0.01 1.07 16 38 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.10 1.98 5.71 -2.39 -0.01 1.96 16 41 H 0.06 1.20 7.91 -2.39 -0.02 1.18 16 42 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.52 6.40 -2.38 -0.02 1.50 16 44 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 48 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 1.93 6.84 -2.39 -0.02 1.91 16 51 H 0.07 1.95 7.47 -2.39 -0.02 1.93 16 Total: -1.00 -82.56 394.67 2.44 -80.12 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.88 Total: 13.55 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 8.03 Total: 7.57 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -8.30 Total: -131.45 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.05 Total: -16.08 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Total: -82.56 2.44 -80.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263041956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.833 kcal (2) G-P(sol) polarization free energy of solvation -82.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds