Wall clock time and date at job start Wed Apr 1 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.29113 * 126.00632 * 2 1 4 4 N 1.29020 * 110.25754 * 179.97438 * 3 2 1 5 5 C 1.32912 * 108.63652 * 359.97438 * 4 3 2 6 6 C 1.34397 * 126.00789 * 179.97438 * 2 1 3 7 7 C 1.50528 * 129.25893 * 0.22769 * 6 2 1 8 8 C 1.53434 * 108.32745 * 163.44164 * 7 6 2 9 9 H 1.09003 * 109.45989 * 289.73280 * 8 7 6 10 10 C 1.50694 * 109.46005 * 169.75812 * 8 7 6 11 11 O 1.21278 * 120.00686 * 274.63140 * 10 8 7 12 12 N 1.34781 * 119.99792 * 94.62405 * 10 8 7 13 13 C 1.46927 * 120.62962 * 354.59510 * 12 10 8 14 14 C 1.53192 * 108.77747 * 233.58181 * 13 12 10 15 15 C 1.53042 * 109.31239 * 305.36903 * 14 13 12 16 16 C 1.53036 * 109.54066 * 61.35697 * 15 14 13 17 17 H 1.09004 * 109.49652 * 58.62331 * 16 15 14 18 18 C 1.53001 * 109.49908 * 178.68539 * 16 15 14 19 19 N 1.46503 * 109.46882 * 295.00237 * 18 16 15 20 20 C 1.36943 * 120.00010 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99733 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00326 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99592 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00270 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47607 * 180.02562 * 24 22 20 26 26 H 1.48504 * 109.47129 * 300.00199 * 24 22 20 27 27 H 1.48504 * 109.47110 * 59.99888 * 24 22 20 28 28 C 1.46920 * 120.63318 * 174.56596 * 12 10 8 29 29 C 1.53116 * 109.53824 * 49.74542 * 8 7 6 30 30 C 1.50588 * 129.16139 * 180.11098 * 5 4 3 31 31 H 1.09001 * 109.46920 * 270.01800 * 1 2 3 32 32 H 1.09000 * 109.47185 * 30.02376 * 1 2 3 33 33 H 1.09002 * 109.47213 * 150.01815 * 1 2 3 34 34 H 1.09008 * 109.67556 * 43.74577 * 7 6 2 35 35 H 1.08998 * 109.70801 * 283.16504 * 7 6 2 36 36 H 1.09009 * 109.58630 * 113.79456 * 13 12 10 37 37 H 1.09004 * 109.58857 * 353.37055 * 13 12 10 38 38 H 1.08997 * 109.49831 * 185.41107 * 14 13 12 39 39 H 1.09001 * 109.52226 * 65.33380 * 14 13 12 40 40 H 1.09008 * 109.45429 * 301.34007 * 15 14 13 41 41 H 1.09001 * 109.44977 * 181.37632 * 15 14 13 42 42 H 1.08995 * 109.47406 * 175.00405 * 18 16 15 43 43 H 1.08998 * 109.47185 * 55.00170 * 18 16 15 44 44 H 0.97002 * 120.00397 * 0.02562 * 19 18 16 45 45 H 0.96996 * 120.00776 * 359.97438 * 23 22 20 46 46 H 1.08999 * 109.58809 * 6.63302 * 28 12 10 47 47 H 1.08999 * 109.58893 * 246.20536 * 28 12 10 48 48 H 1.09000 * 109.44743 * 49.96013 * 29 8 7 49 49 H 1.08996 * 109.45298 * 169.89243 * 29 8 7 50 50 H 1.08995 * 109.69441 * 43.78547 * 30 5 4 51 51 H 1.09005 * 109.69434 * 283.20418 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0445 0.0000 4 7 3.4658 0.6943 0.0005 5 6 3.5328 -0.6332 0.0015 6 6 2.2552 -1.0872 0.0005 7 6 1.8724 -2.5430 -0.0035 8 6 3.1012 -3.3638 -0.4162 9 1 3.3134 -3.1942 -1.4718 10 6 2.8266 -4.8279 -0.1882 11 8 3.0186 -5.3180 0.9044 12 7 2.3674 -5.5927 -1.1986 13 6 2.0178 -4.9920 -2.4930 14 6 0.5870 -5.4015 -2.8563 15 6 0.4726 -6.9273 -2.8200 16 6 0.7748 -7.4297 -1.4064 17 1 0.0766 -6.9769 -0.7024 18 6 0.6282 -8.9521 -1.3633 19 7 -0.7690 -9.3153 -1.6131 20 6 -1.1426 -10.6327 -1.6234 21 1 -0.4073 -11.4039 -1.4470 22 6 -2.4662 -10.9770 -1.8606 23 7 -3.3621 -10.0371 -2.0760 24 14 -2.9759 -12.7739 -1.8739 25 1 -4.4320 -12.8735 -2.1485 26 1 -2.2228 -13.4943 -2.9319 27 1 -2.6781 -13.3828 -0.5526 28 6 2.2077 -7.0431 -1.0267 29 6 4.3086 -2.9349 0.4220 30 6 4.7468 -1.5241 0.0046 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5136 34 1 1.0642 -2.7080 -0.7161 35 1 1.5496 -2.8409 0.9941 36 1 2.7059 -5.3491 -3.2594 37 1 2.0798 -3.9061 -2.4206 38 1 0.3490 -5.0425 -3.8575 39 1 -0.1094 -4.9673 -2.1390 40 1 1.1864 -7.3616 -3.5201 41 1 -0.5381 -7.2223 -3.1020 42 1 0.9289 -9.3184 -0.3818 43 1 1.2624 -9.4000 -2.1283 44 1 -1.4293 -8.6227 -1.7719 45 1 -3.0976 -9.1040 -2.0687 46 1 2.3949 -7.3107 0.0132 47 1 2.9112 -7.5674 -1.6735 48 1 4.0363 -2.9353 1.4774 49 1 5.1299 -3.6327 0.2591 50 1 5.4797 -1.1437 0.7161 51 1 5.1839 -1.5530 -0.9935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265621417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:33 Heat of formation + Delta-G solvation = 63.238991 kcal Electronic energy + Delta-G solvation = -31176.733561 eV Core-core repulsion = 27112.921781 eV Total energy + Delta-G solvation = -4063.811780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.76888 -40.68142 -38.21114 -36.79160 -35.34254 -35.20884 -33.08267 -31.89376 -31.12014 -30.81387 -29.67916 -28.25461 -25.98820 -25.51795 -24.59985 -23.46103 -22.75219 -22.11544 -21.76169 -20.53258 -19.90973 -18.85977 -17.72409 -17.46532 -17.29652 -17.01169 -15.99240 -15.73433 -15.06766 -14.86720 -14.54595 -14.46955 -14.33114 -14.26485 -14.14951 -13.85909 -13.74478 -13.65779 -13.30258 -13.22813 -13.11579 -12.79043 -12.58720 -12.33165 -12.24827 -11.96459 -11.84296 -11.53500 -11.34733 -11.16780 -10.91898 -10.90752 -10.76554 -10.59230 -10.46858 -10.32860 -10.26719 -10.01377 -9.83871 -9.22192 -9.22053 -8.91436 -8.73587 -7.03150 -6.13480 -3.12894 1.18394 1.90258 2.19345 2.39321 2.75099 3.49991 3.53443 3.69966 3.70756 3.96755 4.16476 4.20393 4.32335 4.40516 4.49544 4.54055 4.63427 4.66690 4.77371 4.80839 4.83799 4.89473 4.95943 5.02641 5.04397 5.11849 5.20060 5.29791 5.35838 5.44609 5.46297 5.58187 5.62521 5.63271 5.69314 5.69993 5.80846 5.84854 5.91912 5.92684 5.94370 6.03925 6.17394 6.30166 6.38207 6.47023 6.65925 6.75405 7.21900 7.78356 7.96835 8.16213 8.72822 9.19978 10.06323 10.21252 11.35123 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.002148 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.046809 B =13033.836541 C =13767.050947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.282 5.282 3 N -0.096 5.096 4 N -0.262 5.262 5 C -0.017 4.017 6 C -0.016 4.016 7 C -0.032 4.032 8 C -0.102 4.102 9 H 0.100 0.900 10 C 0.520 3.480 11 O -0.534 6.534 12 N -0.607 5.607 13 C 0.103 3.897 14 C -0.135 4.135 15 C -0.111 4.111 16 C -0.107 4.107 17 H 0.072 0.928 18 C 0.165 3.835 19 N -0.742 5.742 20 C -0.330 4.330 21 H 0.064 0.936 22 C -0.046 4.046 23 N -0.945 5.945 24 Si 1.080 2.920 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.118 3.882 29 C -0.101 4.101 30 C -0.032 4.032 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.366 0.634 45 H 0.253 0.747 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.922 20.178 0.214 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.074 5.074 3 N -0.074 5.074 4 N -0.126 5.126 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.072 4.072 8 C -0.124 4.124 9 H 0.118 0.882 10 C 0.308 3.692 11 O -0.411 6.411 12 N -0.339 5.339 13 C -0.019 4.019 14 C -0.173 4.173 15 C -0.149 4.149 16 C -0.127 4.127 17 H 0.090 0.910 18 C 0.037 3.963 19 N -0.388 5.388 20 C -0.461 4.461 21 H 0.082 0.918 22 C -0.243 4.243 23 N -0.591 5.591 24 Si 0.911 3.089 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.222 1.222 28 C -0.004 4.004 29 C -0.140 4.140 30 C -0.071 4.071 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.200 0.800 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.897 20.281 0.642 23.522 hybrid contribution 0.696 0.179 0.020 0.719 sum 12.594 20.460 0.662 24.034 Atomic orbital electron populations 1.22333 0.72522 1.06140 1.05354 1.46850 1.09271 1.04524 1.46765 1.78605 0.96114 1.11206 1.21463 1.74812 1.09607 1.11900 1.16294 1.21708 0.94972 0.91360 1.07697 1.21642 0.91314 0.91867 1.10211 1.20022 0.97516 0.85709 1.03965 1.21384 0.96558 0.91662 1.02792 0.88209 1.20363 0.76908 0.87998 0.83972 1.90719 1.52173 1.74443 1.23748 1.48160 1.64288 1.08571 1.12919 1.21863 0.97014 0.98139 0.84923 1.21949 0.95655 0.97824 1.01880 1.21527 1.03222 0.93490 0.96652 1.21680 0.95779 0.97918 0.97286 0.90967 1.20524 0.87927 0.90062 0.97791 1.42346 1.03737 1.05240 1.87438 1.20038 0.95903 0.83963 1.46193 0.91764 1.25776 0.91731 1.06673 1.00164 1.70893 1.34994 1.00295 1.52887 0.83238 0.76077 0.73712 0.75892 1.21038 1.22259 1.22246 1.21655 0.96785 0.78624 1.03337 1.21523 0.96436 0.95395 1.00598 1.20000 0.92575 0.91343 1.03186 0.88764 0.87755 0.88146 0.89520 0.88627 0.91021 0.89978 0.90704 0.91647 0.91866 0.90660 0.96072 0.96069 0.80012 0.93543 0.88848 0.91260 0.90086 0.89938 0.89190 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.33 11.27 59.85 0.67 1.00 16 2 N -0.28 -2.51 3.73 -64.00 -0.24 -2.74 16 3 N -0.10 -1.14 13.19 60.35 0.80 -0.35 16 4 N -0.26 -3.32 12.40 33.16 0.41 -2.91 16 5 C -0.02 -0.17 7.11 -83.13 -0.59 -0.76 16 6 C -0.02 -0.14 6.76 -82.50 -0.56 -0.70 16 7 C -0.03 -0.24 5.20 -27.74 -0.14 -0.38 16 8 C -0.10 -0.80 1.69 -91.49 -0.15 -0.95 16 9 H 0.10 0.62 6.17 -51.93 -0.32 0.30 16 10 C 0.52 5.80 6.65 -10.99 -0.07 5.72 16 11 O -0.53 -8.03 15.86 5.56 0.09 -7.94 16 12 N -0.61 -6.50 2.97 -172.77 -0.51 -7.01 16 13 C 0.10 0.83 6.15 -3.71 -0.02 0.81 16 14 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 15 C -0.11 -1.49 5.05 -26.69 -0.13 -1.62 16 16 C -0.11 -1.61 2.38 -90.50 -0.22 -1.83 16 17 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 18 C 0.17 3.23 5.66 -4.04 -0.02 3.21 16 19 N -0.74 -18.30 5.32 -59.91 -0.32 -18.62 16 20 C -0.33 -9.27 9.99 -15.06 -0.15 -9.42 16 21 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 23 N -0.94 -28.90 13.70 55.49 0.76 -28.14 16 24 Si 1.08 25.76 29.92 -169.99 -5.09 20.67 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.12 1.53 5.72 -3.71 -0.02 1.51 16 29 C -0.10 -0.78 4.73 -26.41 -0.12 -0.91 16 30 C -0.03 -0.24 6.30 -27.67 -0.17 -0.41 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.24 7.71 -51.93 -0.40 -0.16 16 34 H 0.09 0.49 7.62 -51.92 -0.40 0.10 16 35 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.08 0.48 5.33 -51.93 -0.28 0.20 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.07 1.21 7.15 -51.93 -0.37 0.84 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.37 9.16 5.68 -40.82 -0.23 8.92 16 45 H 0.25 7.58 6.77 -40.82 -0.28 7.31 16 46 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 49 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -36.64 397.95 -8.25 -44.90 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.18 Total: 3.76 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.97 Total: -7.62 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.90 Total: -59.77 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.09 Total: 20.67 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.64 -8.25 -44.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265621417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.137 kcal (2) G-P(sol) polarization free energy of solvation -36.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds