Wall clock time and date at job start Wed Apr 1 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.29105 * 126.00415 * 2 1 4 4 N 1.29024 * 110.25941 * 180.02562 * 3 2 1 5 5 C 1.32909 * 108.63528 * 0.02562 * 4 3 2 6 6 C 1.34392 * 126.00898 * 180.02562 * 2 1 3 7 7 C 1.50538 * 129.25648 * 359.72803 * 6 2 1 8 8 C 1.53435 * 108.32596 * 196.57454 * 7 6 2 9 9 H 1.09006 * 109.44229 * 70.29300 * 8 7 6 10 10 C 1.50692 * 109.45988 * 190.25515 * 8 7 6 11 11 O 1.21286 * 119.99772 * 34.77941 * 10 8 7 12 12 N 1.34777 * 120.00141 * 214.78302 * 10 8 7 13 13 C 1.46918 * 120.63130 * 354.60748 * 12 10 8 14 14 C 1.53197 * 108.77805 * 233.58726 * 13 12 10 15 15 C 1.53038 * 109.30937 * 305.36537 * 14 13 12 16 16 C 1.53031 * 109.53931 * 61.36436 * 15 14 13 17 17 H 1.09000 * 109.49840 * 58.58536 * 16 15 14 18 18 C 1.53007 * 109.49854 * 178.68112 * 16 15 14 19 19 N 1.46501 * 109.46897 * 294.83594 * 18 16 15 20 20 C 1.36938 * 119.99925 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99493 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99926 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00083 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99715 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47429 * 90.00074 * 24 22 20 26 26 H 1.48504 * 109.47329 * 209.99992 * 24 22 20 27 27 H 1.48501 * 109.47571 * 330.00309 * 24 22 20 28 28 C 1.46925 * 120.62915 * 174.58529 * 12 10 8 29 29 C 1.53111 * 109.55113 * 310.28050 * 8 7 6 30 30 C 1.50594 * 129.16227 * 179.90635 * 5 4 3 31 31 H 1.08998 * 109.47272 * 269.97535 * 1 2 3 32 32 H 1.08999 * 109.47252 * 29.98095 * 1 2 3 33 33 H 1.09001 * 109.46932 * 149.97914 * 1 2 3 34 34 H 1.09003 * 109.69576 * 76.86335 * 7 6 2 35 35 H 1.08999 * 109.68801 * 316.28145 * 7 6 2 36 36 H 1.09000 * 109.58935 * 353.37331 * 13 12 10 37 37 H 1.08999 * 109.59084 * 113.79867 * 13 12 10 38 38 H 1.09000 * 109.49625 * 65.31433 * 14 13 12 39 39 H 1.09003 * 109.49761 * 185.41286 * 14 13 12 40 40 H 1.09005 * 109.45361 * 181.38208 * 15 14 13 41 41 H 1.08998 * 109.45793 * 301.33899 * 15 14 13 42 42 H 1.08994 * 109.46857 * 54.83938 * 18 16 15 43 43 H 1.09001 * 109.47105 * 174.83611 * 18 16 15 44 44 H 0.97004 * 119.99962 * 0.02562 * 19 18 16 45 45 H 0.97003 * 119.99668 * 179.97438 * 23 22 20 46 46 H 1.08997 * 109.58782 * 246.19680 * 28 12 10 47 47 H 1.08993 * 109.59275 * 6.62595 * 28 12 10 48 48 H 1.09003 * 109.45433 * 190.09411 * 29 8 7 49 49 H 1.08997 * 109.45224 * 310.02745 * 29 8 7 50 50 H 1.09001 * 109.68925 * 76.77435 * 30 5 4 51 51 H 1.09001 * 109.69439 * 316.19689 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2239 1.0444 0.0000 4 7 3.4657 0.6943 -0.0005 5 6 3.5328 -0.6331 -0.0015 6 6 2.2551 -1.0871 -0.0005 7 6 1.8722 -2.5430 0.0044 8 6 3.1012 -3.3637 0.4171 9 1 3.3132 -3.1936 1.4727 10 6 2.8266 -4.8278 0.1897 11 8 2.1451 -5.1781 -0.7504 12 7 3.3384 -5.7480 1.0310 13 6 4.2607 -5.3510 2.1035 14 6 5.5351 -6.1942 1.9953 15 6 5.1621 -7.6785 2.0044 16 6 4.2729 -7.9902 0.7986 17 1 4.8017 -7.7337 -0.1194 18 6 3.9276 -9.4807 0.7904 19 7 5.1479 -10.2635 0.5800 20 6 5.0852 -11.6307 0.5357 21 1 4.1360 -12.1319 0.6555 22 6 6.2416 -12.3724 0.3369 23 7 7.3983 -11.7616 0.1914 24 14 6.1559 -14.2375 0.2757 25 1 5.9302 -14.6770 -1.1247 26 1 7.4330 -14.8083 0.7740 27 1 5.0362 -14.7099 1.1291 28 6 2.9841 -7.1673 0.8932 29 6 4.3086 -2.9349 -0.4211 30 6 4.7469 -1.5240 -0.0043 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.5494 -2.8413 -0.9931 35 1 1.0642 -2.7078 0.7172 36 1 4.5110 -4.2954 1.9981 37 1 3.7904 -5.5221 3.0718 38 1 6.0520 -5.9547 1.0660 39 1 6.1875 -5.9778 2.8413 40 1 6.0690 -8.2810 1.9522 41 1 4.6236 -7.9119 2.9228 42 1 3.4800 -9.7552 1.7456 43 1 3.2212 -9.6856 -0.0140 44 1 6.0004 -9.8133 0.4728 45 1 8.2064 -12.2800 0.0528 46 1 2.4098 -7.4866 1.7628 47 1 2.3922 -7.3101 -0.0107 48 1 5.1301 -3.6326 -0.2578 49 1 4.0365 -2.9358 -1.4766 50 1 5.1837 -1.5526 0.9939 51 1 5.4799 -1.1438 -0.7158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265621418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:37 Heat of formation + Delta-G solvation = 62.818453 kcal Electronic energy + Delta-G solvation = -30948.811504 eV Core-core repulsion = 26884.981487 eV Total energy + Delta-G solvation = -4063.830016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.74320 -40.62446 -38.10078 -36.78599 -35.26081 -35.01217 -32.84861 -31.76742 -31.02329 -30.86603 -29.80224 -28.24611 -26.05435 -25.60636 -24.47065 -23.49175 -22.70600 -21.92429 -21.74480 -20.46016 -19.83452 -18.78368 -17.75932 -17.39733 -17.10834 -16.94605 -15.96783 -15.44405 -15.01364 -14.79788 -14.44254 -14.29738 -14.25833 -14.19704 -14.18561 -13.87513 -13.66668 -13.56383 -13.28521 -13.10573 -12.93412 -12.70893 -12.50377 -12.28722 -12.12135 -11.89395 -11.81073 -11.51071 -11.34908 -11.05417 -10.91382 -10.89408 -10.83795 -10.65859 -10.38524 -10.29832 -10.21135 -10.04488 -9.80152 -9.66952 -9.17285 -8.88422 -8.66338 -6.92414 -5.77406 -3.05695 1.20798 1.93796 2.21867 2.43512 2.81577 3.43223 3.48438 3.49853 3.74798 3.97891 4.18922 4.25646 4.40108 4.43621 4.47510 4.58471 4.62643 4.71723 4.77502 4.83434 4.95966 4.99248 5.02292 5.08453 5.14783 5.17653 5.30601 5.42656 5.44290 5.46068 5.55232 5.58171 5.61696 5.65923 5.79299 5.79536 5.84506 5.92521 5.95440 6.04667 6.16044 6.18845 6.19859 6.43598 6.47855 6.63994 6.77595 6.87469 7.29054 7.69609 8.01780 8.18406 8.41724 9.52958 10.10706 10.45387 11.45540 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.001945 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.603496 B =14391.666500 C =14808.997481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.098 5.098 4 N -0.261 5.261 5 C -0.019 4.019 6 C -0.015 4.015 7 C -0.029 4.029 8 C -0.102 4.102 9 H 0.100 0.900 10 C 0.521 3.479 11 O -0.540 6.540 12 N -0.605 5.605 13 C 0.103 3.897 14 C -0.135 4.135 15 C -0.112 4.112 16 C -0.106 4.106 17 H 0.074 0.926 18 C 0.160 3.840 19 N -0.730 5.730 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.118 3.882 29 C -0.109 4.109 30 C -0.030 4.030 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.086 0.914 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.879 24.311 4.119 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.076 5.076 3 N -0.076 5.076 4 N -0.125 5.125 5 C -0.159 4.159 6 C -0.149 4.149 7 C -0.069 4.069 8 C -0.124 4.124 9 H 0.118 0.882 10 C 0.309 3.691 11 O -0.417 6.417 12 N -0.337 5.337 13 C -0.020 4.020 14 C -0.173 4.173 15 C -0.150 4.150 16 C -0.126 4.126 17 H 0.092 0.908 18 C 0.031 3.969 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.004 4.004 29 C -0.148 4.148 30 C -0.069 4.069 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.103 0.897 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.323 25.546 3.635 28.595 hybrid contribution 0.054 -2.002 0.031 2.003 sum -12.269 23.545 3.666 26.802 Atomic orbital electron populations 1.22304 0.72681 1.06130 1.05146 1.46824 1.09209 1.04568 1.46980 1.78594 0.96136 1.11242 1.21641 1.74808 1.09580 1.11939 1.16207 1.21702 0.94987 0.91357 1.07895 1.21751 0.91282 0.92091 1.09755 1.19991 0.97454 0.85035 1.04417 1.21359 0.96594 0.91804 1.02639 0.88216 1.20314 0.79509 0.87446 0.81859 1.90704 1.39636 1.81712 1.29615 1.48124 1.46145 1.07952 1.31517 1.21882 0.90463 0.99377 0.90273 1.21950 0.96305 0.96359 1.02718 1.21535 1.01029 0.94576 0.97822 1.21664 0.95413 0.96255 0.99238 0.90756 1.20587 0.90807 0.87762 0.97697 1.42339 1.04442 1.03244 1.87455 1.19231 0.93629 0.82718 1.41379 0.91205 1.24734 0.95449 0.97948 1.02927 1.69655 0.97813 1.34236 1.56559 0.86187 0.76712 0.85636 0.77636 1.21745 1.21793 1.20790 1.21675 0.97335 0.78381 1.03039 1.21619 0.96532 0.96077 1.00525 1.19970 0.92579 0.91061 1.03312 0.88908 0.87846 0.88144 0.87961 0.89830 0.89790 0.91216 0.91404 0.90710 0.90190 0.92081 0.96223 0.96225 0.78219 0.93538 0.91373 0.88948 0.89682 0.90214 0.89517 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.27 59.85 0.67 0.97 16 2 N -0.28 -2.48 3.73 -64.01 -0.24 -2.72 16 3 N -0.10 -1.16 13.19 60.35 0.80 -0.37 16 4 N -0.26 -3.32 12.40 33.16 0.41 -2.91 16 5 C -0.02 -0.20 7.11 -83.12 -0.59 -0.79 16 6 C -0.01 -0.13 6.76 -82.49 -0.56 -0.69 16 7 C -0.03 -0.22 5.07 -27.74 -0.14 -0.36 16 8 C -0.10 -0.80 1.69 -91.49 -0.15 -0.96 16 9 H 0.10 0.62 6.16 -51.93 -0.32 0.30 16 10 C 0.52 5.82 6.67 -10.99 -0.07 5.75 16 11 O -0.54 -8.00 15.49 5.55 0.09 -7.92 16 12 N -0.61 -6.58 2.97 -172.78 -0.51 -7.09 16 13 C 0.10 0.85 6.15 -3.71 -0.02 0.83 16 14 C -0.14 -1.36 6.08 -26.61 -0.16 -1.52 16 15 C -0.11 -1.54 5.05 -26.70 -0.13 -1.67 16 16 C -0.11 -1.62 2.37 -90.50 -0.21 -1.84 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 18 C 0.16 3.11 5.65 -4.04 -0.02 3.08 16 19 N -0.73 -18.10 5.32 -59.91 -0.32 -18.42 16 20 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 21 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 24 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 28 C 0.12 1.53 5.73 -3.71 -0.02 1.51 16 29 C -0.11 -0.82 5.09 -26.41 -0.13 -0.96 16 30 C -0.03 -0.22 6.30 -27.67 -0.17 -0.40 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.10 0.21 7.96 -51.93 -0.41 -0.21 16 34 H 0.10 0.87 7.52 -51.93 -0.39 0.48 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.50 5.54 -51.93 -0.29 0.22 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.34 7.16 -51.93 -0.37 0.97 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.38 9.94 6.86 -40.82 -0.28 9.66 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 48 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 49 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -35.62 399.94 -8.34 -43.96 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -8.31 Total: 3.71 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.98 Total: -4.33 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.86 Total: -58.75 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.62 -8.34 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265621418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.780 kcal (2) G-P(sol) polarization free energy of solvation -35.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds