Wall clock time and date at job start Wed Apr 1 2020 05:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.29105 * 126.00415 * 2 1 4 4 N 1.29024 * 110.25941 * 180.02562 * 3 2 1 5 5 C 1.32909 * 108.63528 * 0.02562 * 4 3 2 6 6 C 1.34392 * 126.00898 * 180.02562 * 2 1 3 7 7 C 1.50538 * 129.25648 * 359.72803 * 6 2 1 8 8 C 1.53435 * 108.32596 * 196.57454 * 7 6 2 9 9 H 1.09006 * 109.44229 * 70.29300 * 8 7 6 10 10 C 1.50692 * 109.45988 * 190.25515 * 8 7 6 11 11 O 1.21286 * 119.99772 * 34.77941 * 10 8 7 12 12 N 1.34777 * 120.00141 * 214.78302 * 10 8 7 13 13 C 1.46918 * 120.63130 * 354.60748 * 12 10 8 14 14 C 1.53197 * 108.77805 * 233.58726 * 13 12 10 15 15 C 1.53038 * 109.30937 * 305.36537 * 14 13 12 16 16 C 1.53031 * 109.53931 * 61.36436 * 15 14 13 17 17 H 1.09000 * 109.49840 * 58.58536 * 16 15 14 18 18 C 1.53007 * 109.49854 * 178.68112 * 16 15 14 19 19 N 1.46501 * 109.46897 * 294.83594 * 18 16 15 20 20 C 1.36938 * 119.99925 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99493 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99926 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00083 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99715 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47429 * 90.00074 * 24 22 20 26 26 H 1.48504 * 109.47329 * 209.99992 * 24 22 20 27 27 H 1.48501 * 109.47571 * 330.00309 * 24 22 20 28 28 C 1.46925 * 120.62915 * 174.58529 * 12 10 8 29 29 C 1.53111 * 109.55113 * 310.28050 * 8 7 6 30 30 C 1.50594 * 129.16227 * 179.90635 * 5 4 3 31 31 H 1.08998 * 109.47272 * 269.97535 * 1 2 3 32 32 H 1.08999 * 109.47252 * 29.98095 * 1 2 3 33 33 H 1.09001 * 109.46932 * 149.97914 * 1 2 3 34 34 H 1.09003 * 109.69576 * 76.86335 * 7 6 2 35 35 H 1.08999 * 109.68801 * 316.28145 * 7 6 2 36 36 H 1.09000 * 109.58935 * 353.37331 * 13 12 10 37 37 H 1.08999 * 109.59084 * 113.79867 * 13 12 10 38 38 H 1.09000 * 109.49625 * 65.31433 * 14 13 12 39 39 H 1.09003 * 109.49761 * 185.41286 * 14 13 12 40 40 H 1.09005 * 109.45361 * 181.38208 * 15 14 13 41 41 H 1.08998 * 109.45793 * 301.33899 * 15 14 13 42 42 H 1.08994 * 109.46857 * 54.83938 * 18 16 15 43 43 H 1.09001 * 109.47105 * 174.83611 * 18 16 15 44 44 H 0.97004 * 119.99962 * 0.02562 * 19 18 16 45 45 H 0.97003 * 119.99668 * 179.97438 * 23 22 20 46 46 H 1.08997 * 109.58782 * 246.19680 * 28 12 10 47 47 H 1.08993 * 109.59275 * 6.62595 * 28 12 10 48 48 H 1.09003 * 109.45433 * 190.09411 * 29 8 7 49 49 H 1.08997 * 109.45224 * 310.02745 * 29 8 7 50 50 H 1.09001 * 109.68925 * 76.77435 * 30 5 4 51 51 H 1.09001 * 109.69439 * 316.19689 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2239 1.0444 0.0000 4 7 3.4657 0.6943 -0.0005 5 6 3.5328 -0.6331 -0.0015 6 6 2.2551 -1.0871 -0.0005 7 6 1.8722 -2.5430 0.0044 8 6 3.1012 -3.3637 0.4171 9 1 3.3132 -3.1936 1.4727 10 6 2.8266 -4.8278 0.1897 11 8 2.1451 -5.1781 -0.7504 12 7 3.3384 -5.7480 1.0310 13 6 4.2607 -5.3510 2.1035 14 6 5.5351 -6.1942 1.9953 15 6 5.1621 -7.6785 2.0044 16 6 4.2729 -7.9902 0.7986 17 1 4.8017 -7.7337 -0.1194 18 6 3.9276 -9.4807 0.7904 19 7 5.1479 -10.2635 0.5800 20 6 5.0852 -11.6307 0.5357 21 1 4.1360 -12.1319 0.6555 22 6 6.2416 -12.3724 0.3369 23 7 7.3983 -11.7616 0.1914 24 14 6.1559 -14.2375 0.2757 25 1 5.9302 -14.6770 -1.1247 26 1 7.4330 -14.8083 0.7740 27 1 5.0362 -14.7099 1.1291 28 6 2.9841 -7.1673 0.8932 29 6 4.3086 -2.9349 -0.4211 30 6 4.7469 -1.5240 -0.0043 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.5494 -2.8413 -0.9931 35 1 1.0642 -2.7078 0.7172 36 1 4.5110 -4.2954 1.9981 37 1 3.7904 -5.5221 3.0718 38 1 6.0520 -5.9547 1.0660 39 1 6.1875 -5.9778 2.8413 40 1 6.0690 -8.2810 1.9522 41 1 4.6236 -7.9119 2.9228 42 1 3.4800 -9.7552 1.7456 43 1 3.2212 -9.6856 -0.0140 44 1 6.0004 -9.8133 0.4728 45 1 8.2064 -12.2800 0.0528 46 1 2.4098 -7.4866 1.7628 47 1 2.3922 -7.3101 -0.0107 48 1 5.1301 -3.6326 -0.2578 49 1 4.0365 -2.9358 -1.4766 50 1 5.1837 -1.5526 0.9939 51 1 5.4799 -1.1438 -0.7158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265621418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:36 Heat of formation + Delta-G solvation = 39.014272 kcal Electronic energy + Delta-G solvation = -30949.843730 eV Core-core repulsion = 26884.981487 eV Total energy + Delta-G solvation = -4064.862243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.43569 -41.50484 -39.12164 -37.56518 -36.59150 -35.88138 -34.38574 -32.90854 -32.01817 -31.57394 -31.11489 -28.73617 -27.38748 -26.69830 -25.42894 -24.59984 -23.85997 -23.05281 -22.39161 -21.43519 -20.83049 -19.57805 -19.19682 -18.47287 -17.99592 -17.65405 -16.98215 -16.50448 -16.30907 -15.81265 -15.57716 -15.50740 -15.24754 -14.99277 -14.87733 -14.85481 -14.73444 -14.53470 -14.11579 -13.96202 -13.74854 -13.66788 -13.55599 -13.33612 -13.11702 -12.95411 -12.78763 -12.68726 -12.55341 -12.16984 -12.14707 -12.06470 -11.98389 -11.83547 -11.68116 -11.57678 -11.50152 -11.33278 -10.93397 -10.91462 -10.67156 -9.87116 -9.60668 -8.98695 -7.94996 -5.23348 0.53468 1.40947 1.46958 1.47369 1.49102 1.57379 1.59919 1.98101 2.56490 3.11274 3.34355 3.38504 3.62602 3.73613 3.77605 3.78413 3.82544 3.89286 3.98067 4.06591 4.15427 4.19925 4.26914 4.35973 4.41261 4.45259 4.48421 4.51777 4.57719 4.61201 4.65552 4.73812 4.83027 4.87051 4.87663 4.91115 4.92067 4.99962 5.02108 5.07029 5.19560 5.24578 5.29072 5.32456 5.45019 5.49205 5.54107 5.56573 5.62139 6.27436 6.45202 7.15633 7.33937 7.45115 8.10020 8.33575 9.28497 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.001945 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.603496 B =14391.666500 C =14808.997481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.277 5.277 3 N -0.129 5.129 4 N -0.299 5.299 5 C -0.032 4.032 6 C -0.012 4.012 7 C -0.023 4.023 8 C -0.093 4.093 9 H 0.127 0.873 10 C 0.521 3.479 11 O -0.581 6.581 12 N -0.604 5.604 13 C 0.102 3.898 14 C -0.129 4.129 15 C -0.108 4.108 16 C -0.093 4.093 17 H 0.051 0.949 18 C 0.157 3.843 19 N -0.742 5.742 20 C -0.245 4.245 21 H 0.074 0.926 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.973 3.027 25 H -0.289 1.289 26 H -0.294 1.294 27 H -0.269 1.269 28 C 0.127 3.873 29 C -0.104 4.104 30 C -0.025 4.025 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.028 0.972 43 H 0.012 0.988 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.063 0.937 50 H 0.107 0.893 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.066 25.006 5.879 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.069 5.069 3 N -0.106 5.106 4 N -0.163 5.163 5 C -0.173 4.173 6 C -0.147 4.147 7 C -0.062 4.062 8 C -0.114 4.114 9 H 0.145 0.855 10 C 0.311 3.689 11 O -0.461 6.461 12 N -0.336 5.336 13 C -0.019 4.019 14 C -0.167 4.167 15 C -0.146 4.146 16 C -0.113 4.113 17 H 0.069 0.931 18 C 0.030 3.970 19 N -0.385 5.385 20 C -0.377 4.377 21 H 0.092 0.908 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.216 1.216 26 H -0.221 1.221 27 H -0.194 1.194 28 C 0.004 3.996 29 C -0.143 4.143 30 C -0.064 4.064 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.030 0.970 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.112 0.888 49 H 0.082 0.918 50 H 0.125 0.875 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.554 26.284 5.419 30.066 hybrid contribution 0.333 -2.227 -0.545 2.317 sum -13.221 24.057 4.875 27.880 Atomic orbital electron populations 1.22752 0.70110 1.07582 1.06976 1.47202 1.10669 1.03867 1.45175 1.78509 0.96404 1.12470 1.23263 1.74753 1.10344 1.13421 1.17738 1.22198 0.96484 0.90953 1.07703 1.21930 0.91027 0.92606 1.09160 1.19969 0.97940 0.83890 1.04443 1.21354 0.96747 0.89088 1.04245 0.85474 1.20856 0.78550 0.88641 0.80893 1.90694 1.41540 1.82525 1.31347 1.48194 1.46444 1.06804 1.32120 1.22124 0.88888 1.00678 0.90206 1.21912 0.97750 0.93630 1.03404 1.21463 0.98998 0.96997 0.97138 1.21475 0.96903 0.93789 0.99115 0.93076 1.20746 0.88748 0.90064 0.97418 1.42535 1.05718 1.02869 1.87368 1.19637 0.93759 0.84258 1.40062 0.90759 1.25560 0.95245 1.02452 1.03574 1.69811 0.98285 1.35673 1.58154 0.85143 0.76770 0.80294 0.77567 1.21644 1.22057 1.19364 1.21407 0.95566 0.79725 1.02926 1.21571 0.96701 0.96395 0.99589 1.20030 0.91707 0.90127 1.04520 0.86827 0.86959 0.86266 0.89090 0.87747 0.86555 0.89114 0.92195 0.88401 0.93841 0.91202 0.95413 0.96969 0.79308 0.94008 0.89672 0.90889 0.88796 0.91842 0.87451 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 11.27 127.77 1.44 1.79 16 2 N -0.28 -4.42 3.73 -356.41 -1.33 -5.75 16 3 N -0.13 -2.99 13.19 37.02 0.49 -2.50 16 4 N -0.30 -7.48 12.40 -48.99 -0.61 -8.08 16 5 C -0.03 -0.61 7.11 41.75 0.30 -0.31 16 6 C -0.01 -0.19 6.76 41.50 0.28 0.09 16 7 C -0.02 -0.29 5.07 29.94 0.15 -0.14 16 8 C -0.09 -1.18 1.69 -11.36 -0.02 -1.20 16 9 H 0.13 0.96 6.16 -2.38 -0.01 0.94 16 10 C 0.52 10.56 6.67 87.65 0.58 11.15 16 11 O -0.58 -16.83 15.49 -3.05 -0.05 -16.87 16 12 N -0.60 -11.63 2.97 -818.93 -2.43 -14.06 16 13 C 0.10 1.28 6.15 86.37 0.53 1.81 16 14 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 15 C -0.11 -2.88 5.05 30.62 0.15 -2.73 16 16 C -0.09 -2.85 2.37 -10.71 -0.03 -2.87 16 17 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 18 C 0.16 6.18 5.65 86.38 0.49 6.67 16 19 N -0.74 -37.60 5.32 -343.44 -1.83 -39.42 16 20 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 21 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 23 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 24 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 C 0.13 3.15 5.73 86.36 0.49 3.65 16 29 C -0.10 -1.35 5.09 30.80 0.16 -1.19 16 30 C -0.02 -0.32 6.30 29.99 0.19 -0.13 16 31 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.12 0.19 7.96 -2.39 -0.02 0.17 16 34 H 0.09 1.42 7.52 -2.39 -0.02 1.41 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.12 0.77 5.54 -2.39 -0.01 0.75 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.48 7.16 -2.38 -0.02 1.46 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.37 20.12 6.86 -92.71 -0.64 19.49 16 45 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.07 2.12 7.00 -2.39 -0.02 2.10 16 48 H 0.09 1.07 8.11 -2.39 -0.02 1.05 16 49 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 50 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -80.10 399.94 3.07 -77.03 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.30 Total: 22.67 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.22 Total: -2.31 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -5.43 Total: -128.70 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.05 Total: -16.87 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -80.10 3.07 -77.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265621418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.042 kcal (2) G-P(sol) polarization free energy of solvation -80.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds